mRNA_H-elongata_contig50146.12241.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50146.12241.1
Unique NamemRNA_H-elongata_contig50146.12241.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A0D7B749_9AGAR (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7B749_9AGAR)

HSP 1 Score: 52.4 bits (124), Expect = 4.660e-6
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   58 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 234
            +P++ +     A++N LRC IC+E+   PVSL C   +FCS CIR  L   K  CP CR
Sbjct:   14 FPESSTAPGLRALDNALRCTICKELFSGPVSLRC-GHSFCSQCIRQALS-AKQECPTCR 70
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BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A4S8MZ16_DENBC (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8MZ16_DENBC)

HSP 1 Score: 52.4 bits (124), Expect = 4.830e-6
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:   58 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 234
            +P+  +     +++  LRC IC E  E PV+L  C   FCSLCIR +L  TK  CP CR
Sbjct:   22 FPENTAAPGLRSLDTALRCPICSEFFEGPVTL-ICGHCFCSLCIRTFLG-TKQECPTCR 78
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BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A401GKG0_9APHY (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GKG0_9APHY)

HSP 1 Score: 52.0 bits (123), Expect = 6.620e-6
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:   58 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 234
            +P  D       ++  LRC+ICRE+ + PV++ C    FCSLCIR  L   K  CP+CR
Sbjct:   18 FPPADVAPGVRQLDEALRCSICRELYQAPVTISC-GHCFCSLCIRSVLQE-KGECPLCR 74
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BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A7S3C9W6_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C9W6_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 6.640e-6
Identity = 28/71 (39.44%), Postives = 37/71 (52.11%), Query Frame = 1 
Query:   34 LEEDEVYQYPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTK----PRCPICR 234
            +E DE   +           +E  LRC IC+E  + PVS+  C  +FCSLCIR  L+  +    PRCP CR
Sbjct:   19 MEVDEAADWRGCQGFEGLETLEESLRCDICKEFLDAPVSVAGCGHSFCSLCIRASLEFQQRAGSPRCPTCR 89
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BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: UPI00200876C2 (uncharacterized protein n=1 Tax=Antrodia serialis TaxID=139415 RepID=UPI00200876C2)

HSP 1 Score: 52.0 bits (123), Expect = 6.660e-6
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   58 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 234
            +P +D       ++  LRC++C E+ + PV+L C    FCSLC+R YL + K  CP CR
Sbjct:   23 FPPSDVAPGLRLLDEALRCSVCHELYDAPVTLNC-GHCFCSLCVRNYL-KDKKECPSCR 79
[Close]
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A6G6FQK1_9APHY (RING-type domain-containing protein n=1 Tax=Trametes gibbosa TaxID=160864 RepID=A0A6G6FQK1_9APHY)

HSP 1 Score: 51.2 bits (121), Expect = 1.240e-5
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:   58 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPIC 231
            +P T +     A+++ LRC ICR+  + PVSLPC   +FCSLCIR  L      CP C
Sbjct:   26 FPATATAPGLRALDDALRCDICRDFYDAPVSLPCAH-SFCSLCIRSALP-ISATCPTC 81
[Close]
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A4Y7QJU6_9AGAM (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Rickenella mellea TaxID=50990 RepID=A0A4Y7QJU6_9AGAM)

HSP 1 Score: 51.2 bits (121), Expect = 1.240e-5
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   58 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 234
            +P   S     ++++ LRC IC E  + PV+LPC    FCSLCIR ++ R +  CP+CR
Sbjct:   16 FPDEKSAPGLRSLDHALRCNICGEFFDGPVTLPC-GHGFCSLCIREHM-RQESNCPMCR 72
[Close]
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A1C7ME29_GRIFR (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7ME29_GRIFR)

HSP 1 Score: 50.4 bits (119), Expect = 2.280e-5
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 1 
Query:   58 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 234
            +P          +++ LRC+ICRE  E PV+L C    FCS CIR  L   KP CP CR
Sbjct:   20 FPLPSVAPGLRQLDDALRCSICREFYEAPVTLNC-GHCFCSFCIRSALPE-KPECPTCR 76
[Close]
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A5K1JT41_9APHY (DNA repair protein rad18 (Fragment) n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1JT41_9APHY)

HSP 1 Score: 50.4 bits (119), Expect = 2.280e-5
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 1 
Query:   58 YPKTDSGTVFAAIENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 234
            +P   +     A ++ LRC ICR+  + PVSLPC    FCS CIR  L   K +CP CR
Sbjct:   16 FPDDATTPGLRAFDDALRCGICRDFYDAPVSLPC-GHCFCSACIRSALPE-KAQCPACR 72
[Close]
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Match: A0A820I8F4_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820I8F4_9BILA)

HSP 1 Score: 50.1 bits (118), Expect = 2.800e-5
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   94 IENILRCAICREVSEPPVSLPCCQQAFCSLCIRLYLDRTKPRCPICR 234
            I++ L+C IC++  E PVSL  C   FC +CI+++L R +  CPICR
Sbjct:   17 IDDELKCVICKQPLEYPVSLSICNHTFCKVCIQIWLYRNQT-CPICR 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50146.12241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A0D7B749_9AGAR4.660e-644.07Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A4S8MZ16_DENBC4.830e-644.07Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A401GKG0_9APHY6.620e-642.37Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A7S3C9W6_9CHLO6.640e-639.44Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
UPI00200876C26.660e-640.68uncharacterized protein n=1 Tax=Antrodia serialis ... [more]
A0A6G6FQK1_9APHY1.240e-544.83RING-type domain-containing protein n=1 Tax=Tramet... [more]
A0A4Y7QJU6_9AGAM1.240e-542.37Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A1C7ME29_GRIFR2.280e-544.07Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A5K1JT41_9APHY2.280e-544.07DNA repair protein rad18 (Fragment) n=1 Tax=Ganode... [more]
A0A820I8F4_9BILA2.800e-546.81Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50146contigH-elongata_contig50146:1829..3723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.0654433-CDS-H-elongata_contig50146:1828..19411622930825.0654433-CDS-H-elongata_contig50146:1828..1941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50146 1829..1941 +
1691679586.5333133-CDS-H-elongata_contig50146:1828..19411691679586.5333133-CDS-H-elongata_contig50146:1828..1941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50146 1829..1941 +
1622930825.0877962-CDS-H-elongata_contig50146:3602..37231622930825.0877962-CDS-H-elongata_contig50146:3602..3723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50146 3603..3723 +
1691679586.5436509-CDS-H-elongata_contig50146:3602..37231691679586.5436509-CDS-H-elongata_contig50146:3602..3723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50146 3603..3723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50146.12241.1prot_H-elongata_contig50146.12241.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50146 1829..3723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50146.12241.1

>prot_H-elongata_contig50146.12241.1 ID=prot_H-elongata_contig50146.12241.1|Name=mRNA_H-elongata_contig50146.12241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MSRGKRQQEEELEEDEVYQYPKTDSGTVFAAIENILRCAICREVSEPPVS
LPCCQQAFCSLCIRLYLDRTKPRCPICR
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mRNA from alignment at H-elongata_contig50146:1829..3723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50146.12241.1 ID=mRNA_H-elongata_contig50146.12241.1|Name=mRNA_H-elongata_contig50146.12241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1895bp|location=Sequence derived from alignment at H-elongata_contig50146:1829..3723+ (Himanthalia elongata Himel1 dioecious)
ATGAGTAGAGGCAAGAGGCAACAGGAGGAAGAGCTAGAGGAGGACGAGGT
ATATCAGTATCCTAAGACGGATTCTGGGACAGTCTTTGCGGCGATCGAGA
ACATTCTCCGCTGGTAAGTCGCTTTTTGTTCGTGGTCGGCAAGCAGGTCT
GCTCAGAAATCCGCAACAGCCGTACATATCGTTGAACACATTTACGAACA
ATGTCATCTTCAGGCAACAGGTGTGATCGACTTGCGCGCGCAGTCCTTGT
AAATATGTGTCTCGTACAACTTGTCGAGGAAGTGGGGAATAACCGATGAG
AATGCGAACTCAGGAAGGATAATGCTTGTAGGGGACGTCCCTCCGGCGCC
TGGTGCTCAGCCGCCTCGTGATCGGGGAGGACATGCAGTATAAGACAGGG
ACAATGGCCGGTTGAAGGGTAATGCAGTAAGCAATCAAATCCGGTTGATC
TTTACATACTGTCTGTGACTGTATCGCAGATGTCCACTCTACCCATAGTG
GGTATGGGAAAAGAGATGCGCACAATGTATGTATGTATGGTCATCACATT
CAGCAGATGATCAACCGGATTTGGCTGCCTTCTGCTCGTGGTCAGCTGAG
CAGGGAAAATGATTTTTCCCCTGTCCCCGTTCGCGCCTGAGAATATGGGC
CCAAGACGGATTCAGCAGTCCCGTCCCGCGTCCGTCTGCTCATTCTCTCA
ACCCAGGCTGAATCTATCTGGTACGTACTCGCGGGATCCTGTCGATCCTC
TCGTTTTCCACGACGGCGTCTATCTCTACCGTCAACCGCCATCGGACCAA
TCCCGATTTCATCAGGTCACGCAATTGCGTACCAATGGCGTTTACTACCG
AGAACAACTACCGAGAGTCCGCCGGCACTGAGCCAATAGTCCTCAAGGTA
GCTTGAGCCAATCATCGTGCGCCTCTCTTTTTCCCACACCCACTTTGGGT
AGAGTGGGAATGTATACTACTATATCATAGGTGATTCTTCTCCTTATCAG
ATTCTTACAGACGATTGATACTATACTGTACTGTATCGCACATGTCCACT
GTACCAATAGTGGATGTTGGAAAAGAGAGGCGCACAATAAAAATGGTCCA
TGGTGTTTTACCTCAATAAGCCACTATTCATATTTAGTACCCGTTCCTCA
AGCTACCTTGAGAGCTATTGGCCCAGTGTCGGCGGACTCTCTCGGTGGTG
TGAACACCATAGGTATGCAATTGCGCGACCTGATAAACTCGGGATTCACT
GATGACGGTTAACGGTAGAGATAGGCACCTTCGCGGAAAGCGGGTAAGAA
CAAGAGGATCCTGGGAGTAAGCACCAGATTTAGCCTTGGTGAGGAGGATG
AGCAAGCCGACGCGGGACGATACAGCCTAACCCATCTTGCGAGGCAAAAT
TATCAGGCGTGAACGAGGACAGGGAAACTATTTGTTCCCTGTTTTTTAGC
TGAACACGACCAGAATTGGCCACGATATCCGGTTGATCCATTCTATACTG
CTATATATTATGACGTCATGACCACACACTAAGTACAACCTGAGATATGG
TAGAGTCTACTGTACGCTGTCCCGCCTTGATTACGCAAACTTAAAGCACT
CTACAGGAAGGTAATGTTGTCTTCGGGAGTTCCTAAAATATTGCTGCATG
CATACGTATCATAATGGACTGCAACTGGGTGATACGTCCCCGTGGCTTTC
GCGACTGGATCGTGTTCCCTCGTCCCCCTGCTCTGTATTCGGTGGCTGCC
GCGACATGACCCCATCGACGGCAGCGCCATTTGCCGCGAGGTTTCGGAGC
CCCCCGTGTCTCTCCCTTGCTGCCAGCAAGCTTTCTGTTCCCTCTGCATC
CGGCTATACTTGGATCGAACCAAGCCCCGGTGCCCAATCTGTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig50146:1829..3723+

>mRNA_H-elongata_contig50146.12241.1 ID=mRNA_H-elongata_contig50146.12241.1|Name=mRNA_H-elongata_contig50146.12241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig50146:1829..3723+ (Himanthalia elongata Himel1 dioecious)
ATGAGTAGAGGCAAGAGGCAACAGGAGGAAGAGCTAGAGGAGGACGAGGT
ATATCAGTATCCTAAGACGGATTCTGGGACAGTCTTTGCGGCGATCGAGA
ACATTCTCCGCTGATGAGTAGAGGCAAGAGGCAACAGGAGGAAGAGCTAG
AGGAGGACGAGGTATATCAGTATCCTAAGACGGATTCTGGGACAGTCTTT
GCGGCGATCGAGAACATTCTCCGCTGCGCCATTTGCCGCGAGGTTTCGGA
GCCCCCCGTGTCTCTCCCTTGCTGCCAGCAAGCTTTCTGTTCCCTCTGCA
TCCGGCTATACTTGGATCGAACCAAGCCCCGGTGCCCAATCTGTCGGCGC
CATTTGCCGCGAGGTTTCGGAGCCCCCCGTGTCTCTCCCTTGCTGCCAGC
AAGCTTTCTGTTCCCTCTGCATCCGGCTATACTTGGATCGAACCAAGCCC
CGGTGCCCAATCTGTCGG
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