mRNA_H-elongata_contig50092.12234.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50092.12234.1
Unique NamemRNA_H-elongata_contig50092.12234.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50092.12234.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.500e-15
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:   31 IFQVLRSGTLSDKVAALTLQVQESPIHRLGVLEGLLDLGLKKER 162
            + QVLR GTLSDKVAALTLQVQESP+HRL VL+GLLDLGLKKER
Sbjct:  264 VAQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKER 307
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BLAST of mRNA_H-elongata_contig50092.12234.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 9.770e-15
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:   40 VLRSGTLSDKVAALTLQVQESPIHRLGVLEGLLDLGLKKER 162
            VLR GTLSDKVAALTLQVQESP+HRL VL+GLLDLGLKKER
Sbjct:   56 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKER 96
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BLAST of mRNA_H-elongata_contig50092.12234.1 vs. uniprot
Match: A0A7S2GVG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVG6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.320e-8
Identity = 25/39 (64.10%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   37 QVLRSGTLSDKVAALTLQVQESPIHRLGVLEGLLDLGLK 153
            Q+LRSGTL+D++AA+TL+VQ+SP+H L  L+GLL LG K
Sbjct:   74 QMLRSGTLADRIAAMTLRVQQSPLHELSSLDGLLKLGQK 112
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BLAST of mRNA_H-elongata_contig50092.12234.1 vs. uniprot
Match: A0A7S4ECK5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECK5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.080e-7
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   37 QVLRSGTLSDKVAALTLQVQESPIHRLGVLEGLL 138
            QVLRSGT++DKVAA+TL VQESPIHRL  L+ LL
Sbjct:   78 QVLRSGTMADKVAAMTLMVQESPIHRLETLDSLL 111
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BLAST of mRNA_H-elongata_contig50092.12234.1 vs. uniprot
Match: A0A179I8D9_CORDF (CBF domain-containing protein n=2 Tax=Cordyceps confragosa TaxID=2714763 RepID=A0A179I8D9_CORDF)

HSP 1 Score: 55.1 bits (131), Expect = 2.080e-7
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 TSIFHFARFRIFQ-VLRSGTLSDKVAALTLQVQESPIHRLGVLEGLLDLGLKKER 162
            TS+F  A  +    ++ SGTL+DKV+ALTL +QESP+H L   +GL++L  KK R
Sbjct:  225 TSVFASASHKFLSTIMTSGTLTDKVSALTLAIQESPVHNLRAFDGLMNLASKKSR 279
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BLAST of mRNA_H-elongata_contig50092.12234.1 vs. uniprot
Match: A0A0D1YZ12_9EURO (CBF domain-containing protein n=1 Tax=Exophiala sideris TaxID=1016849 RepID=A0A0D1YZ12_9EURO)

HSP 1 Score: 54.7 bits (130), Expect = 2.850e-7
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   40 VLRSGTLSDKVAALTLQVQESPIHRLGVLEGLLDLGLKKER 162
            V+ SGTLSDKV+ALTL VQESPIH +  LE L+ L  KK R
Sbjct:  299 VITSGTLSDKVSALTLAVQESPIHNMRALESLMALARKKSR 339
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BLAST of mRNA_H-elongata_contig50092.12234.1 vs. uniprot
Match: A0A2T3ACI5_9PEZI (CBF/Mak21 family-domain-containing protein n=1 Tax=Coniella lustricola TaxID=2025994 RepID=A0A2T3ACI5_9PEZI)

HSP 1 Score: 54.7 bits (130), Expect = 2.850e-7
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   40 VLRSGTLSDKVAALTLQVQESPIHRLGVLEGLLDLGLKKER 162
            ++ SGT+SDKV+ALTL VQESP+H +  LE L++L  KK R
Sbjct:  291 IMSSGTMSDKVSALTLAVQESPVHNIKTLESLMNLAAKKSR 331
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BLAST of mRNA_H-elongata_contig50092.12234.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.860e-7
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   37 QVLRSGTLSDKVAALTLQVQESPIHRLGVLEGLLDLGLKKER 162
            QVL+SGTLSDK++ALT++ +ESP+HRL  L+ L++L  K +R
Sbjct:  238 QVLKSGTLSDKISALTMRCKESPVHRLADLDKLVELATKHDR 279
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BLAST of mRNA_H-elongata_contig50092.12234.1 vs. uniprot
Match: A0A0N1H227_9EURO (CBF domain-containing protein n=1 Tax=Phialophora attinorum TaxID=1664694 RepID=A0A0N1H227_9EURO)

HSP 1 Score: 54.3 bits (129), Expect = 3.900e-7
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   40 VLRSGTLSDKVAALTLQVQESPIHRLGVLEGLLDLGLKKER 162
            V++SGTLSDK++ALTL VQESPIH +  LE LL L  K+ R
Sbjct:  261 VIQSGTLSDKISALTLAVQESPIHNMKALETLLGLASKRSR 301
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BLAST of mRNA_H-elongata_contig50092.12234.1 vs. uniprot
Match: A0A1S7UI36_ROSNE (Putative ribosome biogenesis protein MAK21 n=1 Tax=Rosellinia necatrix TaxID=77044 RepID=A0A1S7UI36_ROSNE)

HSP 1 Score: 54.3 bits (129), Expect = 3.900e-7
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   40 VLRSGTLSDKVAALTLQVQESPIHRLGVLEGLLDLGLKKER 162
            ++ SGT+SDKV+ALTL VQESP+H +   E LL LG K+ R
Sbjct:  328 IMSSGTMSDKVSALTLAVQESPVHNIKAFENLLGLGAKRSR 368
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50092.12234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI1.500e-1586.36CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L5C9_9PHAE9.770e-1590.24Reverse transcriptase domain-containing protein n=... [more]
A0A7S2GVG6_9STRA5.320e-864.10Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4ECK5_9STRA2.080e-776.47Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A179I8D9_CORDF2.080e-749.09CBF domain-containing protein n=2 Tax=Cordyceps co... [more]
A0A0D1YZ12_9EURO2.850e-765.85CBF domain-containing protein n=1 Tax=Exophiala si... [more]
A0A2T3ACI5_9PEZI2.850e-758.54CBF/Mak21 family-domain-containing protein n=1 Tax... [more]
A0A835ZC94_9STRA2.860e-757.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0N1H227_9EURO3.900e-763.41CBF domain-containing protein n=1 Tax=Phialophora ... [more]
A0A1S7UI36_ROSNE3.900e-758.54Putative ribosome biogenesis protein MAK21 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50092contigH-elongata_contig50092:3324..3485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue5e-12
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930824.5886815-CDS-H-elongata_contig50092:3323..34851622930824.5886815-CDS-H-elongata_contig50092:3323..3485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50092 3324..3485 -
1691679586.3642402-CDS-H-elongata_contig50092:3323..34851691679586.3642402-CDS-H-elongata_contig50092:3323..3485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50092 3324..3485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50092.12234.1prot_H-elongata_contig50092.12234.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50092 3324..3485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50092.12234.1

>prot_H-elongata_contig50092.12234.1 ID=prot_H-elongata_contig50092.12234.1|Name=mRNA_H-elongata_contig50092.12234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
TSIFHFARFRIFQVLRSGTLSDKVAALTLQVQESPIHRLGVLEGLLDLGL
KKER
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mRNA from alignment at H-elongata_contig50092:3324..3485-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50092.12234.1 ID=mRNA_H-elongata_contig50092.12234.1|Name=mRNA_H-elongata_contig50092.12234.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig50092:3324..3485- (Himanthalia elongata Himel1 dioecious)
ACTTCCATTTTTCATTTTGCTCGTTTTCGTATTTTTCAGGTGCTGCGAAG
CGGAACGTTGTCGGACAAAGTAGCGGCGCTGACGCTACAGGTGCAGGAGA
GCCCCATCCACCGCCTCGGGGTGCTTGAGGGGCTGCTGGACCTAGGGCTG
AAGAAGGAGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig50092:3324..3485-

>mRNA_H-elongata_contig50092.12234.1 ID=mRNA_H-elongata_contig50092.12234.1|Name=mRNA_H-elongata_contig50092.12234.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig50092:3324..3485- (Himanthalia elongata Himel1 dioecious)
ACTTCCATTTTTCATTTTGCTCGTTTTCGTATTTTTCAGGTGCTGCGAAG
CGGAACGTTGTCGGACAAAGTAGCGGCGCTGACGCTACAGGTGCAGGAGA
GCCCCATCCACCGCCTCGGGGTGCTTGAGGGGCTGCTGGACCTAGGGCTG
AAGAAGGAGAGGACTTCCATTTTTCATTTTGCTCGTTTTCGTATTTTTCA
GGTGCTGCGAAGCGGAACGTTGTCGGACAAAGTAGCGGCGCTGACGCTAC
AGGTGCAGGAGAGCCCCATCCACCGCCTCGGGGTGCTTGAGGGGCTGCTG
GACCTAGGGCTGAAGAAGGAGAGG
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