mRNA_H-elongata_contig5002.12224.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A699RE47_TANCI (Putative RNA-directed DNA polymerase (Fragment) n=2 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699RE47_TANCI) HSP 1 Score: 69.7 bits (169), Expect = 1.260e-13 Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 7 IPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 219
+PKG + V RW K N G+V + K +VA+GC+Q+YGV+Y + FA + ++V++V+ VA+ NGW L
Sbjct: 19 LPKGKHAVGSRWVFKTKFNSDGSVDRYKACLVAQGCTQQYGVDYKETFAPVAKMTTVRVVLSVAINNGWPL 89
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A6D2LPC9_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LPC9_9BRAS) HSP 1 Score: 65.1 bits (157), Expect = 3.440e-11 Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 10 PKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 219
P+ NI+S +W KTN +G+ +K K +VARG SQEYGV+YL+ FA S ++++++ +A + W L
Sbjct: 20 PEKKNIISVKWIYRIKTNANGDPIKHKARLVARGFSQEYGVDYLETFAPVSRHDTIRVILALAAQKKWRL 89
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: Q9LH44_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LH44_ARATH) HSP 1 Score: 66.6 bits (161), Expect = 4.130e-11 Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 10 PKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 219
PK N++S +W KT+ G +K K +VARG +QEYGV+YL+ FA S +++ ++ +A + GW+L
Sbjct: 876 PKDKNVISVKWIFRLKTDASGEAIKRKARLVARGFTQEYGVDYLETFAPVSRYDTIRTIMAIAAQQGWKL 945
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A2K3MGT9_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MGT9_TRIPR) HSP 1 Score: 66.2 bits (160), Expect = 5.300e-11 Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 4 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 219
D+P GA + +W K NE+G V K K +VA+G SQ+YGV+Y +VFA + ++++V+ +A + GW +
Sbjct: 293 DLPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQKGWNV 364
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A2K3LTN2_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LTN2_TRIPR) HSP 1 Score: 66.2 bits (160), Expect = 5.500e-11 Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 4 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 219
D+P GA + +W K NE+G V K K +VA+G SQ+YGV+Y +VFA + ++++V+ +A + GW +
Sbjct: 109 DLPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQKGWNV 180
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A5N5FQH8_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FQH8_9ROSA) HSP 1 Score: 66.2 bits (160), Expect = 5.620e-11 Identity = 26/72 (36.11%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 4 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 219
++P G+ ++ +W K NE+G V K K +VA+G SQ+YG++Y +VFA + ++++V+ +A + GWE+
Sbjct: 617 ELPTGSKVIGVKWVYKTKLNENGEVDKYKARLVAKGYSQKYGIDYDEVFAPVARLDTIRVVISMAAQKGWEI 688
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A6L2P044_TANCI (Copia-type polyprotein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P044_TANCI) HSP 1 Score: 65.1 bits (157), Expect = 1.450e-10 Identity = 26/72 (36.11%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 4 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 219
D+PKG + +W K NE G V K K +VARG QE+GV+Y++++A + +++L++ +A + GW +
Sbjct: 1368 DLPKGTKCIGVKWVFKTKLNEKGEVEKHKARLVARGYRQEFGVDYVEIYAPVARMDTIRLMIALAEQKGWNI 1439
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A392QXM0_9FABA (Potassium transporter 12 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QXM0_9FABA) HSP 1 Score: 60.8 bits (146), Expect = 4.390e-10 Identity = 24/72 (33.33%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 4 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 219
D+P+G + +W K NEHG + K K +VA+G +Q++G+++ +VFA S +++ ++ VA GW +
Sbjct: 18 DLPQGMKKIGVKWVYKTKYNEHGKIEKHKVRLVAKGYTQQHGIDFNEVFAPGSRWDTIRTILAVAASQGWNV 89
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A438CQH1_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CQH1_VITVI) HSP 1 Score: 63.2 bits (152), Expect = 6.640e-10 Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 1
Query: 4 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGW 213
D+P G + +W K NE+G V K K +VA+G SQ+YGV+Y++VFA + ++++V+ +A + W
Sbjct: 18 DLPSGGKTIGVKWIFKTKLNENGEVDKYKARLVAKGYSQQYGVDYVEVFAPVARLETIRIVISLAAQKDW 87
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A540MY60_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MY60_MALBA) HSP 1 Score: 63.2 bits (152), Expect = 6.770e-10 Identity = 25/72 (34.72%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 4 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 219
D+P G + +W K NE+G V K K +VA+G SQ+YG+++ +VFA + ++++V+ +A + WE+
Sbjct: 567 DLPPGGKTIGVKWVFKTKLNENGEVDKYKAWLVAKGYSQQYGIDFSEVFAPVARMDTIRMVISLAAQRSWEI 638 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5002.12224.1 >prot_H-elongata_contig5002.12224.1 ID=prot_H-elongata_contig5002.12224.1|Name=mRNA_H-elongata_contig5002.12224.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp KDIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFback to top mRNA from alignment at H-elongata_contig5002:11410..11631+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5002.12224.1 ID=mRNA_H-elongata_contig5002.12224.1|Name=mRNA_H-elongata_contig5002.12224.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig5002:11410..11631+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5002:11410..11631+ >mRNA_H-elongata_contig5002.12224.1 ID=mRNA_H-elongata_contig5002.12224.1|Name=mRNA_H-elongata_contig5002.12224.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig5002:11410..11631+ (Himanthalia elongata Himel1 dioecious)back to top |