mRNA_H-elongata_contig115392.1222.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115392.1222.1
Unique NamemRNA_H-elongata_contig115392.1222.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115392.1222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115392contigH-elongata_contig115392:2..978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size169
Cds size168
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115392.1222.1prot_H-elongata_contig115392.1222.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115392 3..978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.8966403-CDS-H-elongata_contig115392:2..471622929668.8966403-CDS-H-elongata_contig115392:2..47Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115392 3..47 -
1691679112.7847726-CDS-H-elongata_contig115392:2..471691679112.7847726-CDS-H-elongata_contig115392:2..47Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115392 3..47 -
1622929668.9153697-CDS-H-elongata_contig115392:307..3431622929668.9153697-CDS-H-elongata_contig115392:307..343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115392 308..343 -
1691679112.8018844-CDS-H-elongata_contig115392:307..3431691679112.8018844-CDS-H-elongata_contig115392:307..343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115392 308..343 -
1622929668.9291615-CDS-H-elongata_contig115392:891..9781622929668.9291615-CDS-H-elongata_contig115392:891..978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115392 892..978 -
1691679112.8220253-CDS-H-elongata_contig115392:891..9781691679112.8220253-CDS-H-elongata_contig115392:891..978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115392 892..978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115392.1222.1

>prot_H-elongata_contig115392.1222.1 ID=prot_H-elongata_contig115392.1222.1|Name=mRNA_H-elongata_contig115392.1222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
PASEPRAAPVISKRRAAKRERHPAISTTTILPVGHHRRPPLHRLAATALM
ASSLAT
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mRNA from alignment at H-elongata_contig115392:2..978-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115392.1222.1 ID=mRNA_H-elongata_contig115392.1222.1|Name=mRNA_H-elongata_contig115392.1222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=977bp|location=Sequence derived from alignment at H-elongata_contig115392:2..978- (Himanthalia elongata Himel1 dioecious)
CCAGCTTCGGAACCACGTGCTGCACCAGTGATATCGAAGAGACGTGCAGC
AAAACGGGAGAGGCACCCTGCTATATCGACGACGACGGTGCGTCACGAAC
CAATATCGTGAAAGTCGAAGATAATAATCGGACATGGGATTACATGAGCA
GGCTGCACCCGTTACTCAAGCTACTTTGAGGACTGCTGGCTCAGTGTCGT
CAGACTCTCAGTGTCAAACGCCATCGGTAGGCAATTGTATAGCCTGATGG
AAGTTAGCGGTAGAGATAGACGCCGTCGTGGAAAACGAAAGGATTGAGAG
GATCCCAGTACGGATCAGATTCAGTCTGGGTTGAGAGAATGAGCAGAGGG
ACGCGGGATGGGGCTGCTGAATCCGTCTCGCGAGCCCAAATCCTCAGGCG
CGAATGGGGACAGTGTAAAAATCAGTTTTCTTGCACCGCTGATCACAAGC
AGGAGGCAACCAAATCCGGTTTAACTCACTCTGCTATATGTGACGACCAC
ACATCATCAGTCTATCTCATCTTGAAAGTGCACGGATTTACATCATTGTG
AAATCTCGCCTTATTTGCTCCCTGATTTATCTCCTCCCGTCTCCAACAAC
GAACTATGGGACATTGATGCCCGCATCGAGGGTAGATTCTCCCAGTCGGA
CATCATCGACGACCCCCACTGGTGAGTTGAATTTCAGGTCAATCAATAGT
TCAGTGTTCGACATAATAAACCCTTAAATAACCCGTCGATCATGTTTGTG
TCGACCCCGTGCGATATAACGCCTTTTCTTGCAACACCCGGCTAAAATCT
CTACGGAAATGAATAGCAAATAACAGGACGTTTGGGATCAGAAGAGGACG
ATAAAATATAGCGCCAATATTATTATTTTTTATCAGTCACTTGTATGATG
GTGTTTTCTTTTTCACTCAAAATAATGACAGCATCGACTTGCAGCAACGG
CCTTGATGGCGTCGAGTCTAGCAACGG
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Coding sequence (CDS) from alignment at H-elongata_contig115392:2..978-

>mRNA_H-elongata_contig115392.1222.1 ID=mRNA_H-elongata_contig115392.1222.1|Name=mRNA_H-elongata_contig115392.1222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig115392:2..978- (Himanthalia elongata Himel1 dioecious)
CCAGCTTCGGAACCACGTGCTGCACCAGTGATATCGAAGAGACGTGCAGC
AAAACGGGAGAGGCACCCTGCTATATCGACGACGACGCCAGCTTCGGAAC
CACGTGCTGCACCAGTGATATCGAAGAGACGTGCAGCAAAACGGGAGAGG
CACCCTGCTATATCGACGACGACGATTCTCCCAGTCGGACATCATCGACG
ACCCCCACTGATTCTCCCAGTCGGACATCATCGACGACCCCCACTGCATC
GACTTGCAGCAACGGCCTTGATGGCGTCGAGTCTAGCAACGCATCGACTT
GCAGCAACGGCCTTGATGGCGTCGAGTCTAGCAACG
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