mRNA_H-elongata_contig4992.12214.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig4992.12214.1
Unique Name	mRNA_H-elongata_contig4992.12214.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig4992.12214.1 vs. uniprot
Match: A0A6H5L4K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.010e-15
Identity = 115/354 (32.49%), Postives = 147/354 (41.53%), Query Frame = 2

Query:    2 DNRVEIMARAPSLEMKRRAGARQSSWKIEQPGVIISLDDRGQRVRRSREGSRRNVAGEEDDI-GVDFGDFGVDRRI-RAGESRNKGEE----RRPVDGWGPRSVTGPVPGGWDYDGVCTGSESCTGTISSV---------------------------------ERPDGAGSCTLSSCSEEAGA--WNDADG---------------AGSVNESRAESTISASDGADEAEAEWPTELRNSIGIVTDLVVPCQTEIVTVERRAENGRNGSGSAPLRHAGRFGVSAWDSECDEPMENVDEEEREMLDAMQVFYRRGKQQLQEHADRHKRSARQRATDNRHPARTPAQQNTHR-RTQ 892
            DNR+E++  APSLE KRR   R +  +  Q     S D  G                + + + GVD G F   +R  R  E  N+ +E       VDGWGPR  TGPV GGW   G C     C   ++S                                           T SS S   GA  W  A G               +G    S A ST    +   E EA W  EL++S+G+VTDLV+PCQ            GR+G        AG  GV     E  E  E   E+EREM  A++  Y +G++QL+ HA+ H + ARQRATD    +RTP QQN +R RTQ
Sbjct:  331 DNRLEVLKLAPSLEKKRRMEGRFAVPQQHQEAPPPSPDLAGSCXXXXXXXXXXXXKEDVEAVTGVDLGCFRAQKRQQRQDEETNRKQEVVAAGAGVDGWGPRQDTGPVEGGW---GDC-----CIPAVASAVDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEATESSTSLSGGAGDWGIASGRXXXXXXXXVCGVSESGXXXXSMAVSTDEQGEEGQE-EARWAEELKSSVGVVTDLVLPCQ------------GRDG--------AGVDGVGIAIEEVGEEGEGH-EDEREMAAALEAIYEKGREQLERHAEVHGKEARQRATDAWLASRTPQQQNDYRERTQ 654

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BLAST of mRNA_H-elongata_contig4992.12214.1 vs. uniprot
Match: D7FXG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG8_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.860e-10
Identity = 54/125 (43.20%), Postives = 72/125 (57.60%), Query Frame = 2

Query:  521 EAEWPTELRNSIGIVTDLVVPCQTEIVTVERRAENGRNGSGSAPLRHAGRFGVSAWDSECDEPMENVDEEEREMLDAMQVFYRRGKQQLQEHADRHKRSARQRATDNRHPARTPAQQNTHR-RTQ 892
            EA W  EL++S+G+VTDLV+PCQ            GR+G        AG  GV     E  E  E   E+EREM  A++  Y +G++QL+ HA+ H + ARQRATD    +RTP QQ+ +R RTQ
Sbjct:  212 EARWAEELKSSVGVVTDLVLPCQ------------GRDG--------AGVDGVGIAIEEGGEE-EXXXEDEREMAAALEAIYEKGREQLKRHAEVHGKEARQRATDAWLASRTPQQQSDYRERTQ 315

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig4992.12214.1 vs. uniprot

BLAST of mRNA_H-elongata_contig4992.12214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L4K7_9PHAE	1.010e-15	32.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FXG8_ECTSI	1.860e-10	43.20	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig4992	contig	H-elongata_contig4992:6244..7966 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-07_003200.1
Exons	2
Model size	1544
Cds size	879
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig4992.12214.1	prot_H-elongata_contig4992.12214.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig4992 6263..7320 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930822.3826551-UTR-H-elongata_contig4992:6243..6262	1622930822.3826551-UTR-H-elongata_contig4992:6243..6262	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig4992 6244..6262 +
1691679585.3273995-UTR-H-elongata_contig4992:6243..6262	1691679585.3273995-UTR-H-elongata_contig4992:6243..6262	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig4992 6244..6262 +
1622930822.427247-UTR-H-elongata_contig4992:7320..7966	1622930822.427247-UTR-H-elongata_contig4992:7320..7966	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig4992 7321..7966 +
1691679585.3735876-UTR-H-elongata_contig4992:7320..7966	1691679585.3735876-UTR-H-elongata_contig4992:7320..7966	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig4992 7321..7966 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930822.4002368-CDS-H-elongata_contig4992:6262..7000	1622930822.4002368-CDS-H-elongata_contig4992:6262..7000	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig4992 6263..7000 +
1691679585.3454168-CDS-H-elongata_contig4992:6262..7000	1691679585.3454168-CDS-H-elongata_contig4992:6262..7000	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig4992 6263..7000 +
1622930822.413614-CDS-H-elongata_contig4992:7179..7320	1622930822.413614-CDS-H-elongata_contig4992:7179..7320	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig4992 7180..7320 +
1691679585.3591013-CDS-H-elongata_contig4992:7179..7320	1691679585.3591013-CDS-H-elongata_contig4992:7179..7320	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig4992 7180..7320 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig4992:6244..7966+
coding sequence from alignment at H-elongata_contig4992:6244..7966+

protein sequence of mRNA_H-elongata_contig4992.12214.1

>prot_H-elongata_contig4992.12214.1 ID=prot_H-elongata_contig4992.12214.1|Name=mRNA_H-elongata_contig4992.12214.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MARAPSLEMKRRAGARQSSWKIEQPGVIISLDDRGQRVRRSREGSRRNVA
GEEDDIGVDFGDFGVDRRIRAGESRNKGEERRPVDGWGPRSVTGPVPGGW
DYDGVCTGSESCTGTISSVERPDGAGSCTLSSCSEEAGAWNDADGAGSVN
ESRAESTISASDGADEAEAEWPTELRNSIGIVTDLVVPCQTEIVTVERRA
ENGRNGSGSAPLRHAGRFGVSAWDSECDEPMENVDEEEREMLDAMQVFYR
RGKQQLQEHADRHKRSARQRATDNRHPARTPAQQNTHRRTQR*

mRNA from alignment at H-elongata_contig4992:6244..7966+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig4992.12214.1 ID=mRNA_H-elongata_contig4992.12214.1|Name=mRNA_H-elongata_contig4992.12214.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1723bp|location=Sequence derived from alignment at H-elongata_contig4992:6244..7966+ (Himanthalia elongata Himel1 dioecious)
CGACAATAGGGTTGAGATTATGGCTCGTGCCCCGTCACTAGAGATGAAGC
GTCGGGCGGGAGCCAGGCAGTCTTCGTGGAAGATTGAGCAGCCCGGAGTG
ATTATTTCTCTGGATGACCGGGGCCAGCGGGTTCGGCGCTCGCGTGAGGG
GAGCCGGCGAAATGTGGCAGGGGAAGAAGATGATATCGGGGTGGATTTCG
GGGATTTTGGTGTAGACAGGCGCATTCGGGCAGGGGAGAGCAGGAACAAG
GGGGAGGAAAGAAGGCCAGTTGACGGCTGGGGGCCGCGGAGCGTCACCGG
TCCTGTGCCGGGTGGTTGGGACTATGACGGCGTGTGCACTGGCAGTGAAA
GCTGCACGGGCACCATCTCTAGTGTAGAGCGACCTGACGGTGCAGGATCG
TGCACGCTTTCGTCATGCTCAGAGGAGGCGGGAGCATGGAATGACGCAGA
CGGCGCGGGAAGCGTGAACGAGAGCAGGGCGGAAAGCACGATTAGCGCGA
GCGACGGCGCGGACGAGGCAGAAGCGGAATGGCCGACCGAACTGCGAAAC
AGCATCGGGATCGTGACGGATCTCGTTGTGCCTTGCCAGACGGAGATTGT
CACTGTCGAGAGGCGCGCGGAGAACGGGAGGAATGGCTCTGGCTCTGCAC
CTTTGAGGCACGCGGGAAGGTTCGGAGTATCGGCCTGGGACTCGGAGTGT
GATGAGCCGATGGAGAATGTTGATGAAGAAGAGCGGGAGATGCTCGATGC
AATGCAGGTGAGTTTGTTTTTTGCTGCCAACGTATCAGTATGTATCAAGA
GGGGATTGAATCACGCGCAGGAGATCTTGGAGGGATTGTGTCTGTCGATT
CAAGCCTCTTAAATCTTAAATCCAACTTCTCCGGCCGACATCCTAAACTT
CCGTGCAACGACGTCTCATGTACATCTCCTTGGCAGGTTTTTTACAGGCG
GGGTAAGCAGCAGCTTCAGGAGCACGCGGATCGCCACAAGCGAAGCGCGA
GGCAACGAGCCACGGACAACCGGCACCCGGCACGTACCCCAGCGCAGCAG
AACACCCACCGACGTACGCAGCGATGACCTCAGGTTTGAGCGAATGAAAA
GGAGCTTGATATGCGGGTCGGGGGCGTCCGGGAGCATCTATTTGCTCTGC
TCCCCTTTTTGACCGTCTACTTTAGGACCGTCTGTCGCGTCCATGCCTCC
TGGCGCTAGCGGCGTCCCCGATCCCCTCGAAATGCTTACCGAGGCGCGTC
CTGGGCCTTCCTCACTAAATGATGGAGGGGGAAATGTTGGAGAGCTATTG
AGGATATTGGAACTGAGCTACGAGGGAATGCCGAGGAAAGGGGTGTGGCT
GGTGTGCTGGATCAGGCTGTGGTGCATTCTAGACGCGGAGTATCCCACTG
CCAAGCCTACCAGGAAAACATTTCAAGGAACGGTCCGAGGAACAGTTCAA
AGGTGGGAAGTGGCGAATTTTTTTAGACGTTGTGAACAACCGTTTTGCTT
TTCCCCTCGTTGGTCCATGAAATTTGGGAAGGCTTGTTGCGAAAGCATCG
TTAAACCTCCAGCGTACGCGTTGAAAATGCGGGAAAACGCCTCTCTCTCG
ATCGTGTTGGGTGTCGTCGAAACAAATTTCCGGGAATATTTTCTGTTTTG
TCTCTCATCGTTTACCTTTGATTTCGACGTTCGTAATTTGGGTGAATCGA
TATCACATACAGTAGAAGAGGTG

Coding sequence (CDS) from alignment at H-elongata_contig4992:6244..7966+

>mRNA_H-elongata_contig4992.12214.1 ID=mRNA_H-elongata_contig4992.12214.1|Name=mRNA_H-elongata_contig4992.12214.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig4992:6244..7966+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGTGCCCCGTCACTAGAGATGAAGCGTCGGGCGGGAGCCAGGCA
GTCTTCGTGGAAGATTGAGCAGCCCGGAGTGATTATTTCTCTGGATGACC
GGGGCCAGCGGGTTCGGCGCTCGCGTGAGGGGAGCCGGCGAAATGTGGCA
GGGGAAGAAGATGATATCGGGGTGGATTTCGGGGATTTTGGTGTAGACAG
GCGCATTCGGGCAGGGGAGAGCAGGAACAAGGGGGAGGAAAGAAGGCCAG
TTGACGGCTGGGGGCCGCGGAGCGTCACCGGTCCTGTGCCGGGTGGTTGG
GACTATGACGGCGTGTGCACTGGCAGTGAAAGCTGCACGGGCACCATCTC
TAGTGTAGAGCGACCTGACGGTGCAGGATCGTGCACGCTTTCGTCATGCT
CAGAGGAGGCGGGAGCATGGAATGACGCAGACGGCGCGGGAAGCGTGAAC
GAGAGCAGGGCGGAAAGCACGATTAGCGCGAGCGACGGCGCGGACGAGGC
AGAAGCGGAATGGCCGACCGAACTGCGAAACAGCATCGGGATCGTGACGG
ATCTCGTTGTGCCTTGCCAGACGGAGATTGTCACTGTCGAGAGGCGCGCG
GAGAACGGGAGGAATGGCTCTGGCTCTGCACCTTTGAGGCACGCGGGAAG
GTTCGGAGTATCGGCCTGGGACTCGGAGTGTGATGAGCCGATGGAGAATG
TTGATGAAGAAGAGCGGGAGATGCTCGATGCAATGCAGATGGCTCGTGCC
CCGTCACTAGAGATGAAGCGTCGGGCGGGAGCCAGGCAGTCTTCGTGGAA
GATTGAGCAGCCCGGAGTGATTATTTCTCTGGATGACCGGGGCCAGCGGG
TTCGGCGCTCGCGTGAGGGGAGCCGGCGAAATGTGGCAGGGGAAGAAGAT
GATATCGGGGTGGATTTCGGGGATTTTGGTGTAGACAGGCGCATTCGGGC
AGGGGAGAGCAGGAACAAGGGGGAGGAAAGAAGGCCAGTTGACGGCTGGG
GGCCGCGGAGCGTCACCGGTCCTGTGCCGGGTGGTTGGGACTATGACGGC
GTGTGCACTGGCAGTGAAAGCTGCACGGGCACCATCTCTAGTGTAGAGCG
ACCTGACGGTGCAGGATCGTGCACGCTTTCGTCATGCTCAGAGGAGGCGG
GAGCATGGAATGACGCAGACGGCGCGGGAAGCGTGAACGAGAGCAGGGCG
GAAAGCACGATTAGCGCGAGCGACGGCGCGGACGAGGCAGAAGCGGAATG
GCCGACCGAACTGCGAAACAGCATCGGGATCGTGACGGATCTCGTTGTGC
CTTGCCAGACGGAGATTGTCACTGTCGAGAGGCGCGCGGAGAACGGGAGG
AATGGCTCTGGCTCTGCACCTTTGAGGCACGCGGGAAGGTTCGGAGTATC
GGCCTGGGACTCGGAGTGTGATGAGCCGATGGAGAATGTTGATGAAGAAG
AGCGGGAGATGCTCGATGCAATGCAGGTTTTTTACAGGCGGGGTAAGCAG
CAGCTTCAGGAGCACGCGGATCGCCACAAGCGAAGCGCGAGGCAACGAGC
CACGGACAACCGGCACCCGGCACGTACCCCAGCGCAGCAGAACACCCACC
GACGTACGCAGCGATGAGTTTTTTACAGGCGGGGTAAGCAGCAGCTTCAG
GAGCACGCGGATCGCCACAAGCGAAGCGCGAGGCAACGAGCCACGGACAA
CCGGCACCCGGCACGTACCCCAGCGCAGCAGAACACCCACCGACGTACGC
AGCGATGA