mRNA_H-elongata_contig49712.12180.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49712.12180.1
Unique NamemRNA_H-elongata_contig49712.12180.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49712.12180.1 vs. uniprot
Match: D7G0C9_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C9_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 1.480e-53
Identity = 103/174 (59.20%), Postives = 122/174 (70.11%), Query Frame = 3 
Query:  495 RMARLMITKRLSWVPEGAKIRDVDPDLFGNYIFQLLALPASGEKLIFPLLNPGLHAYRPLLENLEGS-----------------NGDS---DGEAARR--------GISCPVSIIYGDPAIDWMPSSHGVALAERLRREGIRAKVYTVPEAGHTLTIDNPLGFTQIFLKAYYDA 932
            R A+ ++ +RLSWVPE AKIR+VD DL G+Y++QLLALPASGEK+IFPLL+P LHAYRP+LE L+G                  +G S    GE  RR        GISCPVSIIYG P  DWMP  HGVALAE L R+G+ AKVY+VPEAGHTL IDNP  FT+IFL+AY+DA
Sbjct:  364 RAAKSVVARRLSWVPEAAKIREVDSDLLGDYVYQLLALPASGEKIIFPLLDPMLHAYRPVLETLKGGGXXXXXXXXXXXXXXXXSGGSRVQQGEGTRRSAAEEEGKGISCPVSIIYGSPDHDWMPHRHGVALAENLTRQGVTAKVYSVPEAGHTLIIDNPEDFTRIFLEAYFDA 537
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BLAST of mRNA_H-elongata_contig49712.12180.1 vs. uniprot
Match: A0A4P7NDE1_MAGOR (AB hydrolase-1 domain-containing protein n=6 Tax=Pyricularia TaxID=48558 RepID=A0A4P7NDE1_MAGOR)

HSP 1 Score: 57.0 bits (136), Expect = 6.430e-5
Identity = 53/198 (26.77%), Postives = 80/198 (40.40%), Query Frame = 3 
Query:  390 PPSQRRNSWSFSNFSYRRPPGSL*CHCDVIVMAP--GRMARLMITKRLSWVPEGAKIRDVDPDLFGNYIFQLLALPASGEKLIFPLLNPGLHAYRPLLENLEGSNGD----SDGEAARRGISCPVSIIYGDPAIDWMPSSHGVALAERL----------------RREGIRAKVYTVPEAGHTLTIDNPLGFTQIFLK 917
            PP +  N W    +     P SL     V +  P   R+     ++R S +PE       +     +Y + L     SGE  +  LL PG  A  P++  ++          DG   R     PV  +YG+   DWM    G A  E+L                R+E  RA+V ++P+AGH L IDN   F ++ ++
Sbjct:  376 PPKRPINKWFVWLWDANVSPFSL-----VRLSGPFGPRLVSGWTSRRFSHLPEA------ESQALHDYSYSLFRQRGSGEYALAYLLAPGAFARSPMINRIQEVGRQVFKKEDGSQTRE-TGIPVVFMYGEQ--DWMDIGGGYAAEEKLKAMSRQALLQGTEEEKRKENGRARVVSIPKAGHHLYIDNADEFNRVVME 559
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49712.12180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0C9_ECTSI1.480e-5359.20AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A4P7NDE1_MAGOR6.430e-526.77AB hydrolase-1 domain-containing protein n=6 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49712contigH-elongata_contig49712:444..3871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue9.1e-49
Seed eggNOG ortholog2880.D7G0C9
Preferred nameABHD5
KEGG rclassRC00037,RC00039,RC00094
KEGG koko:K13535,ko:K13698,ko:K13699
KEGG ReactionR09038,R09381
KEGG Pathwayko00564,ko04923,map00564,map04923
GOsGO:0003674,GO:0003824,GO:0004301,GO:0004620,GO:0004622,GO:0004623,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006066,GO:0006576,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009308,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010883,GO:0010888,GO:0010889,GO:0010891,GO:0010896,GO:0010898,GO:0012505,GO:0016020,GO:0016298,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0016801,GO:0016803,GO:0019216,GO:0019222,GO:0019637,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031984,GO:0032879,GO:0034308,GO:0034641,GO:0036152,GO:0042171,GO:0042175,GO:0042439,GO:0042579,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044093,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045834,GO:0046470,GO:0046473,GO:0046474,GO:0046486,GO:0048518,GO:0048519,GO:0048522,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050994,GO:0050996,GO:0051004,GO:0051006,GO:0051336,GO:0051345,GO:0052689,GO:0055081,GO:0055088,GO:0055089,GO:0055090,GO:0055091,GO:0060191,GO:0060193,GO:0061365,GO:0065007,GO:0065008,GO:0065009,GO:0070291,GO:0070328,GO:0071617,GO:0071704,GO:0080090,GO:0090207,GO:0090208,GO:0090407,GO:0097164,GO:0098827,GO:1901564,GO:1901576,GO:1901615,GO:1905952,GO:1905953
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0596@1,KOG4409@2759
EC2.3.1.51
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-02_000920.1
Exons5
Model size1560
Cds size486
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.4840646-UTR-H-elongata_contig49712:443..10351622930818.4840646-UTR-H-elongata_contig49712:443..1035Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49712 444..1035 -
1691679583.401428-UTR-H-elongata_contig49712:443..10351691679583.401428-UTR-H-elongata_contig49712:443..1035Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49712 444..1035 -
1622930818.5594702-UTR-H-elongata_contig49712:3153..35931622930818.5594702-UTR-H-elongata_contig49712:3153..3593Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49712 3154..3593 -
1691679583.513624-UTR-H-elongata_contig49712:3153..35931691679583.513624-UTR-H-elongata_contig49712:3153..3593Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49712 3154..3593 -
1622930818.5765128-UTR-H-elongata_contig49712:3829..38711622930818.5765128-UTR-H-elongata_contig49712:3829..3871Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49712 3830..3871 -
1691679583.525029-UTR-H-elongata_contig49712:3829..38711691679583.525029-UTR-H-elongata_contig49712:3829..3871Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49712 3830..3871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.4983988-CDS-H-elongata_contig49712:1035..11311622930818.4983988-CDS-H-elongata_contig49712:1035..1131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49712 1036..1131 -
1691679583.4158392-CDS-H-elongata_contig49712:1035..11311691679583.4158392-CDS-H-elongata_contig49712:1035..1131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49712 1036..1131 -
1622930818.5126717-CDS-H-elongata_contig49712:1917..19991622930818.5126717-CDS-H-elongata_contig49712:1917..1999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49712 1918..1999 -
1691679583.4280236-CDS-H-elongata_contig49712:1917..19991691679583.4280236-CDS-H-elongata_contig49712:1917..1999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49712 1918..1999 -
1622930818.5264313-CDS-H-elongata_contig49712:2473..26671622930818.5264313-CDS-H-elongata_contig49712:2473..2667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49712 2474..2667 -
1691679583.4787555-CDS-H-elongata_contig49712:2473..26671691679583.4787555-CDS-H-elongata_contig49712:2473..2667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49712 2474..2667 -
1622930818.54097-CDS-H-elongata_contig49712:3039..31531622930818.54097-CDS-H-elongata_contig49712:3039..3153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49712 3040..3153 -
1691679583.4983566-CDS-H-elongata_contig49712:3039..31531691679583.4983566-CDS-H-elongata_contig49712:3039..3153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49712 3040..3153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49712.12180.1prot_H-elongata_contig49712.12180.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49712 1036..3153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49712.12180.1

>prot_H-elongata_contig49712.12180.1 ID=prot_H-elongata_contig49712.12180.1|Name=mRNA_H-elongata_contig49712.12180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MAPGRMARLMITKRLSWVPEGAKIRDVDPDLFGNYIFQLLALPASGEKLI
FPLLNPGLHAYRPLLENLEGSNGDSDGEAARRGISCPVSIIYGDPAIDWM
PSSHGVALAERLRREGIRAKVYTVPEAGHTLTIDNPLGFTQIFLKAYYDA
RTSHGLEDNSN*
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mRNA from alignment at H-elongata_contig49712:444..3871-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49712.12180.1 ID=mRNA_H-elongata_contig49712.12180.1|Name=mRNA_H-elongata_contig49712.12180.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3428bp|location=Sequence derived from alignment at H-elongata_contig49712:444..3871- (Himanthalia elongata Himel1 dioecious)
GCCGCTGGGAATCGTGCGCTGGAGCGGCCCGCTTGGACTCTGGTGACGAG
AAATTCCGTAGAAATTTCCTCACGCGGGCTTTCGTTGCTCTCGTCTTTTG
TTTTTGCTCGTGCGACGACGCACTGTTAGTCTAGGCCGTGGCGAATGTCA
GGGAGAAGAAAATATAGCTCTACGTGGTGCTCGTGCGACCGACCGAGCAC
GGTACGGGAAGCTTGCGTCTTTCTTACCACCCCCATCACCCCCTCCTCCT
CCTGCCCTTCTCTGCGACGAACCGAAAGGGACGCAGACAGCATGTGCAGT
GTCCATATCTTGGGGAGAAAGTCTTTGTTTATCGCTCCGGCGGATGTAAC
TGTCTGCGCCGGGAGGCTGTTCCGGAGGAAGGTCGTTGGGAAGGGTAGCA
CCGATAAAAATGCCTCGGGGGGAGCGAGTGTCGCCGCAGATGCCCAATAC
ACCCACCATGGTTGACTGGCCGCAGGAGAATGTCCTTCGTCCTCTTTCAC
GAGGAAAACACAATATAGCCTAGATACGCACCAGCCACGGTCAATCTGTT
GCTCTCCGGGGGGAGGTGCCGTGAACCCTCTTGATGGAAACATCCTGAGA
CTTTTGTCATTAACCCTTCTTCACTCCTCCTTCCCAAAGAAGAAACTCTT
GGTCATTTAGTAACTTCTCCTACCGCCGCCCCCCGGGGTCATTGTGATGT
CATTGTGACGTCATTGTCATGGCTCCCGGAAGGATGGCGCGGCTGATGAT
CACGAAAAGACTATCATGGGTTCCGGAAGGAGCAAAGATTCGAGACGTTG
ATCCCGATCTATTCGGGAACTACATTTTCCAGGTTAGCCCAACCCTACCC
CTCTCATGCCGTGGAGTTCAAGCGTGATGCTTTTTGTCGTCCCCAACATA
TTTAACGCTCGACTCCGTGAGACCAGCAGCTCCTCGCCCGCCACCGGATG
CAGCAACTCTTGCCCATAAGCCCCCCCCCAACCCGAATCACCCCGACGTT
GCCCATGGTAGCCGAATATACCCTGCCCCCATCGCAACTGAACGGAAATA
ATTACGGAGTTCAGGACAGGTACTATTTAGGTTTAGCGTTCAATCCCTTG
GCCGCCCGTTGCTAACAACCCGTATATAATGAATTGAACATTAAATTTTG
TGCCTTGGGCTCTTTTTGTGTCTCGCGTGCGCATTCGTTTATCCATCTGG
ACAGCTGTTGGCTTTGCCTGCGTCCGGGGAGAAACTCATATTTCCCCTGC
TGAACCCTGGTCTGCACGCGTACCGCCCGCTGTTGGAAAACTTGGAGGGG
AGCAACGGCGACAGCGACGGCGAGGCAGCAAGACGAGGCATATCTTGTCC
CGTGTCAATTATTTACGGCGATCCAGCGATCGATTGGATGCCCAGCAGGT
GCGTTAGGGGGATTATTTTTTTTTGTGAGCTCCCTTTTCATTTGGGGCCG
CCCGTGTTGGAGTAAGGTTTTTCCCCCCCCCCCCCCCCCCCGTTGTGCTT
CTGAGCCACTGCCGGAATAGCCTTTGAGAGCCACTGAGTGACTCCGTTAG
CCCTGACTGGGTGACTCGCGATTTAGCTCAGCGGTTGTAAATCTGCGTCT
TAAATTATTCCGATGACAGGAACGGTTCGTGTTTGCGATTAAATGTAGAG
ATGGGGGAGAAGGGGAAGGATGTCTTTTCCTGTGGCTTGCGATCGAACAT
GGTAACCGCTAAACACGTTTGTTTGCGATTTCACCTTCGCGCCAGAGGCC
TCGGCCATCGGTCCTATATTTTTGTCGTACGCAAGTCAACCGTCAGTTTA
GCAGCAACGAACGTATCGTTGTCCCGAGCCGACCGCACCGCGTCGTTTTC
TCCGACCTCCATGCTGAAGCAGTCATGGGGTGGCGTTGGCCGAACGTTTG
AGGCGTGAGGGCATCCGGGCCAAGGTGTACACCGTGCCCGAAGCAGGTCA
CACGGTGAGTCTGTAGCGGCGTTGCGCTCTCAGCGTGGTCGTGATACCCC
CATCCATACGGCATACGGCATACGATGCTCTGTTTTGGCCAGATTTTGTT
GGCACCTGTCGTTGGCTGGTCTCTAAGGTGTGTGTGGGGTTCTATGAATA
GTGTTTATTTTTTTGTATGTTTGTTTGTTTTTGCCTTGAGGCTGACTCGT
TGGCTGCAGACCGCATACTTCTTAAAAAAACATTTAAAATTCATTTCAAC
CCCTCCGAACATCCACGCCTTCTTAGCACCGTGGGAGGTTCAGTCCAGGG
GACCGACCGTCGTCAGGTTCGAATGTATACATTGCTACCTTTGAACACAC
ACAATTGTCATATGTGATTAATCGTGCTCCCCCAAAGCAGATTAATCAGG
TCAATGGTATAATGTCGGGGATCCCATCATTATCATACCGTACAGTTACA
TTATTATTATTCATCATGTGGGGACTAGGACGACAAAACAGAGCCTAGCG
AGTGAACTGTAATTAGGAATGGCTGTTAGGTCTAGGTAAATGAGATATAA
TGGTAAGACTCGGTAGATATATATCTATACATCGCGTAATTTCAGGTCAG
GTTTACACCTACCGGTATATATTAGAGGTGGAGTTAGGCGGCGCACGATT
GAAGAATGGCCTGATTACCACCCCTCTCTTCCTGAAGCAACGTACGTTGT
TCTCGCCGGTGGTCTACGTCCGTTAAAATACGATACGCGCTTAAAATACC
CCTCCCCCCCCACCTCCCCCTCATCGTATGTTTCTTGCAGTTGACCATCG
ACAACCCCCTCGGCTTCACTCAAATATTCCTTAAAGCCTACTACGACGCA
CGAACTTCGCATGGCCTCGAGGATAACAGTAATTAAGAATAACACACACG
GTTCCTGGGATATCAATTTAAAAGCATTAAAAGTTGGGAGAATACGAGTC
AGTTTCCAGCGCGATGAATGATCACTCACGCGACGAAGTCGGCGCCATGA
GATTATTTGATAGGATCGATCCCTCGAAAGGAAAGAAGGAACGAAGTCGG
TCTCATCCGGAAGGAATGGGTTTCAGAACGCCGACTGCCACAGACGGCTG
AGCTCGAGGAGAAAGCTGTGTGCAACAGTACTGCTGTGAAATGCCAAGCG
ATCGTTTACCGAACCTAGGGGTGAAGCAGGTGTGAATGTTCGGAGGGTTT
GAATGAGTTCAGTTCAGATTAAAAATAAAAATAAAAATGAGGAGCTTTGA
ACAAAATCGCGTGCCACCGAATTCTATAAATAAGTAAATAGCCATATAAT
ACGGAGACAAGAAGCGTTTTACCCAGATGCTATTGATCATAGTAGTATCA
TATTACTAGATATTTTGTTGTTGTGCGTGTTGCTCTTTCTAAGCGTTTTT
TATACCCCGTATTTTGGTCTACTGCTGGGTGTGTAATCAACAGCACTATT
ATTAGTAGGATTCCTACTACCCTCAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig49712:444..3871-

>mRNA_H-elongata_contig49712.12180.1 ID=mRNA_H-elongata_contig49712.12180.1|Name=mRNA_H-elongata_contig49712.12180.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig49712:444..3871- (Himanthalia elongata Himel1 dioecious)
ATGGCTCCCGGAAGGATGGCGCGGCTGATGATCACGAAAAGACTATCATG
GGTTCCGGAAGGAGCAAAGATTCGAGACGTTGATCCCGATCTATTCGGGA
ACTACATTTTCCAGATGGCTCCCGGAAGGATGGCGCGGCTGATGATCACG
AAAAGACTATCATGGGTTCCGGAAGGAGCAAAGATTCGAGACGTTGATCC
CGATCTATTCGGGAACTACATTTTCCAGCTGTTGGCTTTGCCTGCGTCCG
GGGAGAAACTCATATTTCCCCTGCTGAACCCTGGTCTGCACGCGTACCGC
CCGCTGTTGGAAAACTTGGAGGGGAGCAACGGCGACAGCGACGGCGAGGC
AGCAAGACGAGGCATATCTTGTCCCGTGTCAATTATTTACGGCGATCCAG
CGATCGATTGGATGCCCAGCAGCTGTTGGCTTTGCCTGCGTCCGGGGAGA
AACTCATATTTCCCCTGCTGAACCCTGGTCTGCACGCGTACCGCCCGCTG
TTGGAAAACTTGGAGGGGAGCAACGGCGACAGCGACGGCGAGGCAGCAAG
ACGAGGCATATCTTGTCCCGTGTCAATTATTTACGGCGATCCAGCGATCG
ATTGGATGCCCAGCAGTCATGGGGTGGCGTTGGCCGAACGTTTGAGGCGT
GAGGGCATCCGGGCCAAGGTGTACACCGTGCCCGAAGCAGGTCACACGTC
ATGGGGTGGCGTTGGCCGAACGTTTGAGGCGTGAGGGCATCCGGGCCAAG
GTGTACACCGTGCCCGAAGCAGGTCACACGTTGACCATCGACAACCCCCT
CGGCTTCACTCAAATATTCCTTAAAGCCTACTACGACGCACGAACTTCGC
ATGGCCTCGAGGATAACAGTAATTAATTGACCATCGACAACCCCCTCGGC
TTCACTCAAATATTCCTTAAAGCCTACTACGACGCACGAACTTCGCATGG
CCTCGAGGATAACAGTAATTAA
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