mRNA_H-elongata_contig49483.12136.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49483.12136.1 vs. uniprot
Match: A0A6H5KF67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF67_9PHAE) HSP 1 Score: 315 bits (807), Expect = 1.470e-103 Identity = 169/275 (61.45%), Postives = 198/275 (72.00%), Query Frame = 1
Query: 25 ENTSLNVIKVLLQMCLTTINVVCWLVPMKIRSFVESKRAISMANAFSGGIFLSLAFGHMLPQSVHGFEGSGLPENLPYFLTLSGYMLIFFVEKIAFDAHHIMNDGXXXXXXXXXSVSAKDEMAVVGA----------ERVTSSGRSATILLVALGVHALMETMALGLSSSXXXXXXXXXXXXXXXXXXXXXXLVSFLKSGLKERQIITMLSVFSCIGPVGVGIGIAVSEFFGQLADAIMIALAAGTFIYVGATEVIAEEFETPENKWKKFLALSG 819
E SLNV+K+LLQMCLTT+NVVCWLVPMKIRSFVESKRAISMANAFSGG+FLSLAFGH++P + HGFE +GLP N+PYFLTLSGYMLIFFVEK+AFDAH IM++G A + + V A L+ALGVHALMETMALGLSS+ LVSFLKSGL ERQ+I LS+FSC+GP G+G+GIA+SEF G+LADA+M+A+AAGTFIYVGATEVIAEEFE+P +KWKKF AL+
Sbjct: 87 EKMSLNVMKILLQMCLTTLNVVCWLVPMKIRSFVESKRAISMANAFSGGVFLSLAFGHLMPHATHGFEEAGLPANVPYFLTLSGYMLIFFVEKVAFDAHSIMHEGDGHGQQQHGGGKAMADGSSVTAVXXXXXXXXXXXXXXXXXXXXXXLLALGVHALMETMALGLSSNRVSAGLLAMSIGLHQPAESLALLVSFLKSGLSERQVIKYLSIFSCLGPAGLGLGIAISEFTGKLADAVMVAMAAGTFIYVGATEVIAEEFESPHDKWKKFFALTA 361
BLAST of mRNA_H-elongata_contig49483.12136.1 vs. uniprot
Match: D7G198_ECTSI (ZIP divalent metal transporters n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G198_ECTSI) HSP 1 Score: 274 bits (700), Expect = 8.170e-89 Identity = 157/272 (57.72%), Postives = 182/272 (66.91%), Query Frame = 1
Query: 34 SLNVIKVLLQMCLTTINVVCWLVPMKIRSFVESKRAISMANAFSGGIFLSLAFGHMLPQSVHGFEGSGLPENLPYFLTLSGYMLIFFVEKIAFDAHHIMNDGXXXXXXXXXSVSAKDEMAVVGAERVTSSG----------RSATILLVALGVHALMETMALGLSSSXXXXXXXXXXXXXXXXXXXXXXLVSFLKSGLKERQIITMLSVFSCIGPVGVGIGIAVSEFFGQLADAIMIALAAGTFIYVGATEVIAEEFETPENKWKKFLALSG 819
SLNV+K+LLQ IRSFVESKRAISMANAFSGG+FLSLAFGHM+P + GFE SGLP N+PYFLTLSGYMLIFFVEK+AFDAH+IM++G X RSA ILL+ALGVHALMETMALGLSS+ LVSFLKSGL ERQ+I LS+FSC+GP G+G+GIA+SEF G+LADA+M+A+AAGTFIYVGATEVIAEEFE+P +KWKKF AL+
Sbjct: 2 SLNVMKILLQ----------------IRSFVESKRAISMANAFSGGVFLSLAFGHMMPHATLGFEESGLPANVPYFLTLSGYMLIFFVEKVAFDAHNIMHEGDGHGQQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAIILLLALGVHALMETMALGLSSNRVSAGLLAMSIGLHQPAESLALLVSFLKSGLSERQVIKYLSIFSCLGPAGLGLGIAISEFAGKLADAVMVAMAAGTFIYVGATEVIAEEFESPHDKWKKFSALTA 257
BLAST of mRNA_H-elongata_contig49483.12136.1 vs. uniprot
Match: A0A836CLP2_9STRA (ZIP divalent metal transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLP2_9STRA) HSP 1 Score: 260 bits (664), Expect = 1.090e-83 Identity = 130/235 (55.32%), Postives = 170/235 (72.34%), Query Frame = 1
Query: 115 RSFVESKRAISMANAFSGGIFLSLAFGHMLPQSVHGFEGSGLPENLPYFLTLSGYMLIFFVEKIAFDAHHIMNDGXXXXXXXXXSVSAKDEMAVVGAERVTSSGRSATILLVALGVHALMETMALGLSSSXXXXXXXXXXXXXXXXXXXXXXLVSFLKSGLKERQIITMLSVFSCIGPVGVGIGIAVSEFFGQLADAIMIALAAGTFIYVGATEVIAEEFETPENKWKKFLALSG 819
R F ESK ISMANAFSGG+FLSLAFGHMLP + HGFE SGLPE+ P++LTL+GY+LIFFVEKIAFD H +++D ++ D + +V +SGRSAT+LL+AL VH+L ETMALGLS+S LVSFLK+GL + +I+ ML++FSC+GP+GVG+G+A +++ G L DA++++LAAGTF+YVGATEV+A+EFETP +KWKKF AL G
Sbjct: 2 RRFTESKVGISMANAFSGGVFLSLAFGHMLPHAAHGFENSGLPESTPFYLTLTGYLLIFFVEKIAFDTHEMLHDAHDNGPQSPSTIKPIDSS---NSAQVAASGRSATVLLLALSVHSLFETMALGLSTSRLNALLLAMSIGLHQPAESLALLVSFLKTGLPQGKIVKMLALFSCVGPLGVGLGVAAAQYAGDLVDAVLVSLAAGTFVYVGATEVVADEFETPHHKWKKFAALLG 233
BLAST of mRNA_H-elongata_contig49483.12136.1 vs. uniprot
Match: A0A448Z4G5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4G5_9STRA) HSP 1 Score: 253 bits (645), Expect = 2.300e-78 Identity = 141/262 (53.82%), Postives = 180/262 (68.70%), Query Frame = 1
Query: 49 KVLLQMCLTTINVVCWLVPMKIRSFVESKRAISMANAFSGGIFLSLAFGHMLPQSVHGFEGSGLP---ENLPYFLTLSGYMLIFFVEKIAFDAHHIMNDGXXXXXXXXXSVSAKDEMAVVGAERVTS--SGRSATILLVALGVHALMETMALGLSSSXXXXXXXXXXXXXXXXXXXXXXLVSFLKSGLKERQIITMLSVFSCIGPVGVGIGIAVSEFFGQLADAIMIALAAGTFIYVGATEVIAEEFETPENKWKKFLALSG 819
K+L Q LTTINVVCWLVP++ +SF E+K A+S+ANAFSGGIFLSLAFGHM+P+ VH + S + E PY L LSGY+LIFFVEK+AFDAH IM++ + +K G++ T+ +GRSA ILL ALGVH+++E MALGLS S X LV+FLKSG+ ++ IIT LSVFS +GP+GV +G+AV+EF + DAIM+A+ AGTF+YVGATEVI EE+E E+KWKKF AL G
Sbjct: 165 KILFQAFLTTINVVCWLVPLRSKSFGENKLALSLANAFSGGIFLSLAFGHMIPECVHEYAASAVGDYNEATPYMLVLSGYLLIFFVEKVAFDAHEIMHEMEQGGQSDDGNAVSKSS----GSDATTTKNTGRSAMILLAALGVHSILEMMALGLSDSFSDSAILTXSIALHQPAESIALLVAFLKSGMPKKDIITFLSVFSAMGPIGVXLGMAVNEFAAPIVDAIMLAVVAGTFVYVGATEVIPEEWEDSEHKWKKFFALMG 422
BLAST of mRNA_H-elongata_contig49483.12136.1 vs. uniprot
Match: B5Y3R5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3R5_PHATC) HSP 1 Score: 243 bits (621), Expect = 8.430e-75 Identity = 137/264 (51.89%), Postives = 177/264 (67.05%), Query Frame = 1
Query: 37 LNVIKVLLQMCLTTINVVCWLVPMKIRSFVESKRAISMANAFSGGIFLSLAFGHMLPQSVHGFEGSGLPENLPYFLTLSGYMLIFFVEKIAFDAHHIMN-----DGXXXXXXXXXSVSAKDEMAVVGAERVTSSGRSATILLVALGVHALMETMALGLSSSXXXXXXXXXXXXXXXXXXXXXXLVSFLKSGLKERQIITMLSVFSCIGPVGVGIGIAVSEFFGQLADAIMIALAAGTFIYVGATEVIAEEFETPENKWKKFLAL 813
LN KV+ Q LT INV+CWLVP++ + E+K A+S+ANAFSGG+FLSLAFGH++P+ +HGFE S E P+ L L+GY+LIFFVEK+AFDAH I++ D XXXX XX K A SSGRSA ILL AL VH+++E MALGL+ + LV+FLKSG+ E QII LS+FSC+GP+GV +G+AV+EF + D++M+A+ AGTF+YVGATEVI EE+E +KWKKF AL
Sbjct: 151 LNAWKVIFQAILTAINVICWLVPLRSKKMSENKLALSLANAFSGGVFLSLAFGHLIPECIHGFEASTYAETTPFMLVLAGYLLIFFVEKVAFDAHDILHEMQGDDHHXXXXPDXXXXXXKKSSGGTEAASSLSSGRSAVILLGALAVHSILEMMALGLADTFGDCALLTMSISLHQPAESIALLVAFLKSGVPEAQIIQYLSIFSCMGPIGVALGMAVNEFAAPIVDSMMLAVVAGTFVYVGATEVIPEEWEDSTHKWKKFAAL 414
BLAST of mRNA_H-elongata_contig49483.12136.1 vs. uniprot
Match: A0A1E7FJQ0_9STRA (Zinc/iron permease n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJQ0_9STRA) HSP 1 Score: 238 bits (607), Expect = 1.820e-74 Identity = 135/274 (49.27%), Postives = 173/274 (63.14%), Query Frame = 1
Query: 28 NTSLNVIKVLLQMCLTTINVVCWLVPMKIRSFVESKRAISMANAFSGGIFLSLAFGHMLPQSVHGFEGS------GLPEN--LPYFLTLSGYMLIFFVEKIAFDAHHIMNDGXXXXXXXXXSVSAKDEMAVVGAE----RVTSSGRSATILLVALGVHALMETMALGLSSSXXXXXXXXXXXXXXXXXXXXXXLVSFLKSGLKERQIITMLSVFSCIGPVGVGIGIAVSEFFGQLADAIMIALAAGTFIYVGATEVIAEEFETPENKWKKFLAL 813
N LN K++ Q LT +NVVCWLVP+K +SF E+K A+S+ANAFSGG+FLSLAFGH++P+ VHGF + GL N PY L LSGYMLIFFVEK+AFDAH +++ + V + +SGRSA ILL AL VH+++E ALGLS + LV+FLKSG+ + QII LS+FS +GP+G G+GI V+EF + D+IM+A+ AGTF+YVGATEVI EEFE +NKWKKF AL
Sbjct: 4 NIPLNGWKIIFQTFLTILNVVCWLVPLKSKSFGENKLALSLANAFSGGVFLSLAFGHLIPECVHGFSSNTGGLVGGLMSNEATPYMLVLSGYMLIFFVEKVAFDAHGALHEMEHAQDNTNKVKGNNKKNGVAHTHSKDAQQQNSGRSAVILLAALAVHSILEMAALGLSDTFSDSALLTVSIALHQPAESIALLVAFLKSGMPKNQIIVFLSIFSLMGPIGCGLGIVVNEFADPIVDSIMLAVVAGTFVYVGATEVIPEEFEDSDNKWKKFTAL 277
BLAST of mRNA_H-elongata_contig49483.12136.1 vs. uniprot
Match: A0A1Z5JFF0_FISSO (Solute carrier family 39 (Zinc transporter), member 1/2/3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFF0_FISSO) HSP 1 Score: 240 bits (612), Expect = 1.090e-73 Identity = 134/263 (50.95%), Postives = 179/263 (68.06%), Query Frame = 1
Query: 37 LNVIKVLLQMCLTTINVVCWLVPMKIRSFVESKRAISMANAFSGGIFLSLAFGHMLPQSVHGFEGSGLPENLPYFLTLSGYMLIFFVEKIAFDAHHIMNDGXXXXXXXXXSVSAKDEMAVVGAERVT--SSGRSATILLVALGVHALMETMALGLSSSXXXXXXXXXXXXXXXXXXXXXXLVSFLKSGLKERQIITMLSVFSCIGPVGVGIGIAVSEFFGQLADAIMIALAAGTFIYVGATEVIAEEFETPENKWKKFLALSG 819
LN KV+ Q LTT+NV+CWL+P+K + ++K A+SMANAFSGG+FLSLAFGH++P+ VHGF + LPE PY L L+GY+LIFFVEK+AFDAH I+++ XXXXX + + VT SGR A ILL AL VH+++E MALGL+++ LV+FLKSG+ E Q++ LS+FSC+GP+GV +G+AVSE+ + D+IM+A+ AGTF+YVGATEVI EE+E +KW KF AL G
Sbjct: 136 LNSWKVIFQALLTTMNVLCWLIPLKSKKISQNKFALSMANAFSGGVFLSLAFGHLIPECVHGF--ANLPEETPYLLVLAGYLLIFFVEKVAFDAHEILHEMQGEGXXXXXXXXXQVVNTKESKQEVTPAGSGRGAVILLGALAVHSVLEMMALGLANNFGDCALLTLSISLHQPAESIALLVAFLKSGMPEDQVLKYLSIFSCMGPIGVALGMAVSEYAAPIVDSIMLAVVAGTFVYVGATEVIPEEWEDGHHKWAKFAALMG 396
BLAST of mRNA_H-elongata_contig49483.12136.1 vs. uniprot
Match: A0A7S0UKI6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UKI6_9STRA) HSP 1 Score: 237 bits (605), Expect = 1.870e-73 Identity = 134/267 (50.19%), Postives = 173/267 (64.79%), Query Frame = 1
Query: 28 NTSLNVIKVLLQMCLTTINVVCWLVPMKIRSFVESKRAISMANAFSGGIFLSLAFGHMLPQSVHGFEGSGLP---ENLPYFLTLSGYMLIFFVEKIAFDAHHIMNDGXXXXXXXXXSVSAKDEMAVVGAERVTSSGRSATILLVALGVHALMETMALGLSSSXXXXXXXXXXXXXXXXXXXXXXLVSFLKSGLKERQIITMLSVFSCIGPVGVGIGIAVSEFFGQLADAIMIALAAGTFIYVGATEVIAEEFETPENKWKKFLALSG 819
N LN K++ Q+ LTTINVVCWLVP++ +SF E+K A+S+ANAFSGG+FLSLAFGH++P+ V GF S + E PY L LSGY+LIFFVEK+AFDA I + ++S K E ++ RSA ILL AL VH+++E MALGLS S LV+FLKSG+ + +II LSVFS +GP+GV +G+AV+EF + DA+ +A+ AGTF+YVGATEVI EEFE E+KW KF AL G
Sbjct: 74 NIPLNGWKIIFQVILTTINVVCWLVPLQSKSFGENKLALSLANAFSGGVFLSLAFGHLIPECVEGFASSLVGHYNEATPYMLVLSGYLLIFFVEKVAFDADAIKEELEHAQEDSNGAISKKSEDG-------KNTSRSAVILLAALAVHSILEMMALGLSDSFSDSAILTVSIALHQPAESIALLVAFLKSGMPKGEIIKFLSVFSMMGPIGVALGMAVNEFAAPIVDAVTLAIVAGTFVYVGATEVIPEEFEDSEHKWMKFAALMG 333
BLAST of mRNA_H-elongata_contig49483.12136.1 vs. uniprot
Match: A0A7S1YY76_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YY76_TRICV) HSP 1 Score: 238 bits (607), Expect = 4.780e-73 Identity = 133/269 (49.44%), Postives = 175/269 (65.06%), Query Frame = 1
Query: 37 LNVIKVLLQMCLTTINVVCWLVPMKIRSFVESKRAISMANAFSGGIFLSLAFGHMLPQSVHGFEGSGLPENLPYFLTLSGYMLIFFVEKIAFDAHHIMNDGXXXXXXXXXSVSAKDEM----------AVVGAERVTSSGRSATILLVALGVHALMETMALGLSSSXXXXXXXXXXXXXXXXXXXXXXLVSFLKSGLKERQIITMLSVFSCIGPVGVGIGIAVSEFFGQLADAIMIALAAGTFIYVGATEVIAEEFETPENKWKKFLAL 813
LN+ KV+ Q LTT+NV+CWL+P++ +K A+S+ANAFSGG+FLSLAFGH++P+ VHGF G E LPY L L GY+LIFFVEK+AFDAH +M+ G K++ A G E + SGRSA ILL AL VH+++E ALGL+++ LV+FLKSG+ + QI+ LS+FS +GPVGV IG+AV+EF + DAIM+A+ AGTF+YVGATEVI EE+E P++KWKKF AL
Sbjct: 119 LNLWKVIFQAMLTTMNVLCWLIPLRSEKISSNKLALSLANAFSGGVFLSLAFGHLIPECVHGF-GPEYNEALPYMLVLGGYLLIFFVEKVAFDAHGLMHAGEEGHDERGHHTHGKEKAVSNGTSNKDDAAEGGEGL-GSGRSAVILLGALAVHSVLEMTALGLANTFGESALLSLSIALHQPAESIALLVAFLKSGMPKPQIVQYLSIFSAMGPVGVAIGMAVNEFAAPIVDAIMLAIVAGTFVYVGATEVIPEEWEEPDHKWKKFAAL 385
BLAST of mRNA_H-elongata_contig49483.12136.1 vs. uniprot
Match: A0A6S8XAZ7_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XAZ7_9STRA) HSP 1 Score: 237 bits (604), Expect = 2.090e-71 Identity = 131/275 (47.64%), Postives = 172/275 (62.55%), Query Frame = 1
Query: 28 NTSLNVIKVLLQMCLTTINVVCWLVPMKIRSFVESKRAISMANAFSGGIFLSLAFGHMLPQSVHGFEGSGLPENLPYFLTLSGYMLIFFVEKIAFDAHHIMND---GXXXXXXXXXSVSAKDEMA----------VVGAERVTSSGRSATILLVALGVHALMETMALGLSSSXXXXXXXXXXXXXXXXXXXXXXLVSFLKSGLKERQIITMLSVFSCIGPVGVGIGIAVSEFFGQLADAIMIALAAGTFIYVGATEVIAEEFETPENKWKKFLAL 813
N LN+ KV+ Q+ LT +NV CWL+P++ + E+K A+ +ANAFSGG+FLSLAFGH++P+ +HGFEG+GL E LPY + L GY+LIFFVEK+AFDAH +M+ G V K + A ++GRSA ILL AL VH+++E ALGL+ + LV+FLKSG+ + II LSVFS +GPVGV IG+AV+ F + D+IM+A AGTFIYVGATEVI EE+E E+KW KF AL
Sbjct: 219 NIPLNMWKVIFQIFLTAMNVACWLIPLRAKKITENKYALGIANAFSGGVFLSLAFGHLIPECIHGFEGTGLNEALPYMIVLGGYLLIFFVEKVAFDAHGLMHGCGPGDGSGDEHGKEVVVKKDXXXXXXXXXXGDTATATATANNGRSAVILLGALAVHSILEMTALGLARTFGDSALLSLSIALHQPAESIALLVAFLKSGMPKSDIIKYLSVFSAMGPVGVAIGMAVTSFAAPIVDSIMLATVAGTFIYVGATEVIPEEWEDQEHKWPKFFAL 493 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49483.12136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49483.12136.1 >prot_H-elongata_contig49483.12136.1 ID=prot_H-elongata_contig49483.12136.1|Name=mRNA_H-elongata_contig49483.12136.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=273bp ASAIAGAVENTSLNVIKVLLQMCLTTINVVCWLVPMKIRSFVESKRAISMback to top mRNA from alignment at H-elongata_contig49483:1886..3794- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49483.12136.1 ID=mRNA_H-elongata_contig49483.12136.1|Name=mRNA_H-elongata_contig49483.12136.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1909bp|location=Sequence derived from alignment at H-elongata_contig49483:1886..3794- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49483:1886..3794- >mRNA_H-elongata_contig49483.12136.1 ID=mRNA_H-elongata_contig49483.12136.1|Name=mRNA_H-elongata_contig49483.12136.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1638bp|location=Sequence derived from alignment at H-elongata_contig49483:1886..3794- (Himanthalia elongata Himel1 dioecious)back to top |