mRNA_H-elongata_contig490.12075.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig490.12075.1
Unique NamemRNA_H-elongata_contig490.12075.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig490.12075.1 vs. uniprot
Match: A0A6H5K499_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K499_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.020e-9
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 LKTNFKRDFAQTEGFRRIADAAEREQNELRILRARGMLPPTFP 129
            ++TNF+R+F +TEGFRRI DAAE+EQ E R+L+A G LPP  P
Sbjct:   53 METNFQREFVETEGFRRIVDAAEQEQRENRLLQAGGFLPPDSP 95
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BLAST of mRNA_H-elongata_contig490.12075.1 vs. uniprot
Match: D7FU02_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU02_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.080e-9
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 LKTNFKRDFAQTEGFRRIADAAEREQNELRILRARGMLPPTFP 129
            ++TNF+R+F +TEGFRRI DAAE EQ E R+LRA G LPP  P
Sbjct:  127 METNFQREFVETEGFRRIVDAAELEQRENRLLRAGGFLPPDAP 169
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BLAST of mRNA_H-elongata_contig490.12075.1 vs. uniprot
Match: A0A6H5K0N5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0N5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.760e-8
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 LKTNFKRDFAQTEGFRRIADAAEREQNELRILRARGMLPPT 123
            ++TNF+RDF +TEGFRRI DA+E EQ E+R+LRA G+L P+
Sbjct:  291 METNFQRDFVETEGFRRIVDASELEQREMRLLRAEGVLVPS 331
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BLAST of mRNA_H-elongata_contig490.12075.1 vs. uniprot
Match: D7FTZ7_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 9.700e-8
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 LKTNFKRDFAQTEGFRRIADAAEREQNELRILRARGMLPPT 123
            ++TNF+RDF +TEGFRRI DA+E EQ ++R+LRA G+L P+
Sbjct:  342 METNFQRDFIETEGFRRIVDASELEQRQMRLLRAEGVLVPS 382
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BLAST of mRNA_H-elongata_contig490.12075.1 vs. uniprot
Match: D7FTZ9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 8.670e-7
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 LKTNFKRDFAQTEGFRRIADAAEREQNELRILRARGMLPPTFP 129
            ++  FK +F +TEGFRRIA+A+E EQ E R+LRA G LPP+ P
Sbjct:  383 MEAEFKAEFVETEGFRRIANASELEQREKRLLRAGGFLPPSTP 425
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BLAST of mRNA_H-elongata_contig490.12075.1 vs. uniprot
Match: D7FIR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR9_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.040e-6
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 LKTNFKRDFAQTEGFRRIADAAEREQNELRILRARGML 114
            ++TNF+ DF  TEGFRRI DA+E+EQ EL +LR+ GML
Sbjct:  220 METNFQSDFVTTEGFRRIMDASEKEQQELSLLRSGGML 257
[Close]
BLAST of mRNA_H-elongata_contig490.12075.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 7.790e-6
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 LKTNFKRDFAQTEGFRRIADAAEREQNELRILRARGMLPP 120
            ++TNF+ DF +TEGFRRI +AAE EQ ++R+L+A G L P
Sbjct:  345 METNFQTDFVETEGFRRIVNAAELEQRQIRLLQAEGFLLP 384
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig490.12075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K499_9PHAE1.020e-962.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU02_ECTSI3.080e-965.12Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5K0N5_9PHAE2.760e-863.41RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ7_ECTSI9.700e-860.98Similar to regulator of G-protein signaling 16 n=1... [more]
D7FTZ9_ECTSI8.670e-758.14RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FIR9_ECTSI3.040e-663.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTZ5_ECTSI7.790e-657.50Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig490contigH-elongata_contig490:17011..17163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue7.1e-08
Seed eggNOG ortholog2880.D7FU04
Preferred nameRGS1
KEGG koko:K16449
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003150.1
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930806.3270726-CDS-H-elongata_contig490:17010..171631622930806.3270726-CDS-H-elongata_contig490:17010..17163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig490 17011..17163 +
1691679578.3006995-CDS-H-elongata_contig490:17010..171631691679578.3006995-CDS-H-elongata_contig490:17010..17163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig490 17011..17163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig490.12075.1prot_H-elongata_contig490.12075.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig490 17011..17163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig490.12075.1

>prot_H-elongata_contig490.12075.1 ID=prot_H-elongata_contig490.12075.1|Name=mRNA_H-elongata_contig490.12075.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
LKTNFKRDFAQTEGFRRIADAAEREQNELRILRARGMLPPTFPAVTPPSP
A
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mRNA from alignment at H-elongata_contig490:17011..17163+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig490.12075.1 ID=mRNA_H-elongata_contig490.12075.1|Name=mRNA_H-elongata_contig490.12075.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig490:17011..17163+ (Himanthalia elongata Himel1 dioecious)
CTTAAGACGAATTTCAAGAGGGATTTCGCACAAACGGAAGGCTTTCGCCG
AATCGCGGACGCAGCTGAACGAGAACAAAATGAGCTGAGAATCCTGCGTG
CGAGGGGCATGTTGCCTCCAACTTTCCCGGCCGTAACACCGCCTTCCCCT
GCT
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Coding sequence (CDS) from alignment at H-elongata_contig490:17011..17163+

>mRNA_H-elongata_contig490.12075.1 ID=mRNA_H-elongata_contig490.12075.1|Name=mRNA_H-elongata_contig490.12075.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig490:17011..17163+ (Himanthalia elongata Himel1 dioecious)
CTTAAGACGAATTTCAAGAGGGATTTCGCACAAACGGAAGGCTTTCGCCG
AATCGCGGACGCAGCTGAACGAGAACAAAATGAGCTGAGAATCCTGCGTG
CGAGGGGCATGTTGCCTCCAACTTTCCCGGCCGTAACACCGCCTTCCCCT
GCTCTTAAGACGAATTTCAAGAGGGATTTCGCACAAACGGAAGGCTTTCG
CCGAATCGCGGACGCAGCTGAACGAGAACAAAATGAGCTGAGAATCCTGC
GTGCGAGGGGCATGTTGCCTCCAACTTTCCCGGCCGTAACACCGCCTTCC
CCTGCT
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