mRNA_H-elongata_contig4899.12072.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4899.12072.1
Unique NamemRNA_H-elongata_contig4899.12072.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: D7FKS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS6_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 5.300e-109
Identity = 198/344 (57.56%), Postives = 238/344 (69.19%), Query Frame = 3
Query:  552 YTPPSAGRDIRGAGDSRVHIDFRGKEGSRRGNRIRVNPGVEKSTSDAISAGDVAVIGGFTTGVMAIQRYNRRRFLQESGGGYESGSSTSAAVDGHLGK----ETAVVTSLQLSMFCDRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDS-TYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRD-DHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
            Y  P AGRDI G+  SR HI F G  G RR  R R NP    + S +I+ GDVA+IGG +  V A+QRYNR+RF+ E G    SG   SA +    G+    +TAVVT+LQL ++CDRQ G+  +L  L+ LS+TA+V SPRGLS L++EVCLTLLR+ RDW+G  GS+K Y    R   +GKK   S P SRAKRDFNRA  RERSKWERETV NTPD+GFSSS  AP   G     S TYAVATL+VAW+ L S  P +E R+    W   D+RD D DR V F+VVNR+S +T LEW+ +EAAEGRGEN+LDVEVLWTPADPDDSLDR+DLD KWPELR +
Sbjct:  206 YQRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEG----SGQRPSAPLPPRSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKK---SSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSST-APSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGG--WFTRDSRDRDDDRGVEFSVVNRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 539          
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A835ZEJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.120e-16
Identity = 81/257 (31.52%), Postives = 122/257 (47.47%), Query Frame = 3
Query:  801 SGSSTSAAVDG-HLGKETAVVTSLQLSMFCDRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVI-TFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
            SG  +S  V+G  LG+   VV  LQ+++    ++ + GIL  L+ ++  A   S  GLS  VSEVCL L+R + DWI +A   + + P              R + RA+  FN     ER+K ERETV     +  S S ++ G R   +   T AV T+V+A                    L+G++     R  +   +N  S +   L  +  +A    GEN+L VE+LWTP +P +SLDR  +   +PEL  +
Sbjct:  182 SGGWSSVDVEGGSLGRGVGVV-KLQVALNASDRSSR-GILAQLKSIAERAETSSRGGLSTAVSEVCLALVRRQPDWIASASQYEYFAP--------------RSAERAEAVFNTYAIAERTKVERETVSRFGGEDLSDSRRSDGVRPEDLGKPTQAVVTIVLA--------------------LKGESL---KRFQLERSINSASALRNVLTQVAGDATTDDGENVLGVELLWTPEEPWESLDRQAVLEDFPELMDL 399          
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A7S0QBA5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBA5_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 2.730e-13
Identity = 79/232 (34.05%), Postives = 108/232 (46.55%), Query Frame = 3
Query:  867 LQLSMFC-DRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGE-NLLDVEVLWTPADPDDSLDRDDLDVKWPEL 1556
            LQ++ +C DRQ   +G    L+ L+RTA+  S  GL  LVS+ CL  LR+ +DW+ AA +  E +                 S+  +  +NR V +ERSKWE             S  K+  R   G  ++TY VATLVV    LR+ S   E                       T VN        E I + AA+   E NL+  EVLWTP DP+D +DRDD+ + +PEL
Sbjct:   62 LQVACYCGDRQNSLYG---KLQSLARTADTSSYEGLQQLVSDTCLATLRSSKDWL-AARTTSETKGLF--------------SNDVESQYNRIVVKERSKWE-------------SEQKSLTRTSAG--EATYMVATLVVL---LRNGSELPEV----------------------TGVNE-----LREAISQLAADVSIEDNLIAAEVLWTPEDPNDVMDRDDMFLNFPEL 230          
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A6T9D2F6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9D2F6_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 9.030e-12
Identity = 73/238 (30.67%), Postives = 107/238 (44.96%), Query Frame = 3
Query:  867 LQLSMFC-DRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVV---AWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGE-NLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
            LQ++ +C DRQ    G    L+ ++RTA+  S  GL  L S+ CL +LR  +DW+ AA ++                 S+   +  +  +NR V +ER+KW+ E          S    APG+        TY VATLVV   + + L +IS  S+ R++                                 I + AA+   E NLL  EVLWTP D +D +DRDD+ + +PEL  I
Sbjct:   24 LQVACYCEDRQTSLAG---KLQSIARTADAGSYEGLQALCSDTCLAMLRTSKDWL-AARTVSST--------------STMFQNDVESTYNRLVVQERAKWDMEAK--------SLKRSAPGQ-------PTYMVATLVVLLRSGSELPAISGVSDLREA---------------------------------IAQLAADVSVEDNLLAAEVLWTPEDTNDVMDRDDMFLNFPELVSI 195          
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A0M0K0F2_9EUKA (Membrane protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0F2_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 2.390e-11
Identity = 72/234 (30.77%), Postives = 103/234 (44.02%), Query Frame = 3
Query:  867 LQLSMFCD-RQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
            LQ++ +CD RQ   +G    L  ++ +A+  S  GL  LVS+ CL +LR+ +DW+ A          + G  K   + +          +NR V  ERSKWE E              KA  R   G P  TY VATLVV     + + P S+          GD RD         + N  + ++              +NLL  EVLWTP D +D +DRD+L + +PEL  +
Sbjct:   58 LQVACYCDDRQNSLFG---KLNKIASSADTDSELGLQSLVSDTCLAILRSSKDWLAA-----RTESEIAGLLKNDVDAA----------YNRLVVTERSKWEVE-------------QKALKRTAPGQP--TYMVATLVVLLRSAQPLKPISQN---------GDLRD--------ALQNLAAAVSV------------DDNLLAAEVLWTPEDTNDVMDRDELFLNFPELVSV 229          
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A6T0A215_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6T0A215_CHRCT)

HSP 1 Score: 76.3 bits (186), Expect = 3.930e-11
Identity = 74/248 (29.84%), Postives = 107/248 (43.15%), Query Frame = 3
Query:  837 LGKETAVVTSLQLSMFC-DRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVVAW---ARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGE-NLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
            +G +      +QL+ +C DR+   +G    L+ L+RTA   +  GL  LVS+ CL +LR+  DW+ A  S      +++G  K             +  +NR V +ERSKWE E       Q  S +    G+        TY V TLVV     + L +IS T   R +                                 I + AA+   E NL+  EVLWTP + DD +DRDD+ + +PEL  I
Sbjct:  174 MGDDPGAAYCIQLACYCGDREKSLYG---RLQSLARTAETDTYEGLQQLVSDTCLAMLRSSNDWLAARTST-----NLKGFFKND----------VESQYNRIVVQERSKWESE------QQQLSRTTSKAGQ-------PTYMVVTLVVLLREGSELPAISGTPTLRDA---------------------------------IAQLAADVSVEDNLIAAEVLWTPEEDDDVMDRDDMFLNFPELITI 357          
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A7S2X718_9EUKA (Hypothetical protein n=3 Tax=Lotharella TaxID=74819 RepID=A0A7S2X718_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 5.710e-9
Identity = 71/242 (29.34%), Postives = 109/242 (45.04%), Query Frame = 3
Query:  834 HLGKETAVVTSLQLSMFCDRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGR-RGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPEL 1556
            +L   T  V  LQ++++C  + G   +   L +L+  A+  S  GL  LV E  L LLR+E DW+  AG  + ++  + G            S+  +  FN+A+ +ER+K+E E                 GR + +G    +Y + T++VA   LR  +P   T +            D  R  +     R S+                ENLL  EVLWTP DPDDSL R+++ +K+PEL
Sbjct:  180 YLEASTGTVMLLQVAVYCGDR-GPNSLYGRLNNLAAGADTWSEEGLRNLVQETTLALLRSEEDWV--AGRSETFQKGMLGK-----------SNDVESAFNQALLKERAKFEEENT---------------GRLKRVGANKPSYMIVTVMVA---LRD-APNLPTIRGL----------DEMRSALAMTSARASI---------------EENLLAAEVLWTPEDPDDSLTREEVFLKFPEL 363          
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: R1FD01_EMIHU (Uncharacterized protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FD01_EMIHU)

HSP 1 Score: 67.8 bits (164), Expect = 1.720e-8
Identity = 68/234 (29.06%), Postives = 106/234 (45.30%), Query Frame = 3
Query:  867 LQLSMFCD-RQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
            LQ++ +CD R    +G    L+ ++R+A  +S  GL  L S+ CL +LR+ +DW+  AG  +     +              ++  +  +NR V +ERSKWE E       QG + +  APG+        TY VATLVV                          R   +   V T  + +  I+ L    + + E   +NLL  E+LWTP D +D ++RDDL + +PEL  +
Sbjct:  151 LQVACYCDDRNDSLYG---RLQSVARSAETQSYEGLQRLCSDSCLAMLRSSKDWL--AGRTESTTAGLL-------------TNDVETSYNRLVVQERSKWESE-------QG-ALTRSAPGQ-------PTYMVATLVVLL------------------------RQGSELPSVSTAADLREAISALA--ADVSVE---DNLLAAELLWTPEDGNDVMERDDLFLNFPELVNV 322          
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A7S4DSS3_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DSS3_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 3.130e-8
Identity = 70/241 (29.05%), Postives = 108/241 (44.81%), Query Frame = 3
Query:  837 LGKETAVVTSLQLSMFCDRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGR-RGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPEL 1556
            L   T  V  LQ++++C  + G   +   L +L+  A+  S  GL  LV E  L LLR+E DW+  AG  + ++  + G            S+  +  FN+A+ +ER+K+E E                 GR + +G    +Y + T++VA   LR  +P   T +            D  R  +     R S+                ENLL  EVLWTP DP+DSL R+++ +K+PEL
Sbjct:  178 LEASTGTVMLLQVAVYCGDR-GPNSLYGRLNNLAAGADTWSEEGLRNLVQETTLALLRSEEDWV--AGRSETFQKGMLGK-----------SNDVESAFNQALLKERAKFEEENT---------------GRLKRVGANKPSYMIVTVMVA---LRD-APNLPTIRGL----------DEMRSALAMTSARASI---------------EENLLAAEVLWTPEDPEDSLTREEVFLKFPEL 360          
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A7S2IDZ6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IDZ6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.990e-8
Identity = 72/258 (27.91%), Postives = 114/258 (44.19%), Query Frame = 3
Query:  804 GSSTSAAVDGHLGKETAVVTSLQLSMFCDRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETV--YNTPDQG--FSSSNKAPGRRGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
            G+ T AA D  LG   +VV  L ++M    +     IL+ ++ LSRTA   S  G+S L+S+V L LLR +   + A+ S K+ +   +                A+R+FN    +ERSK+E+ET+  Y   D G   S ++ +P         +T AV TL+++                    ++GD+        V  + +   V + L  I  +   G  E L   E+LWTP +  D L   D+   +P+L  I
Sbjct:  264 GTRTVAATDSALGDGVSVV-KLSVAMNVPNRDDPNSILSVIDRLSRTAKTDSRMGVSNLMSQVSLELLRRKDSIVAASSSYKKVKDPTK----------------AQREFNTLSVKERSKFEKETISRYGGVDYGSKVSGASSSPN----DTHKATMAVVTLLLS--------------------IDGDSTQ------VPKIRSASDVASALSRIASDVKVG--ECLRSAEILWTPEERSDVLSTRDILADYPDLATI 472          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKS6_ECTSI5.300e-10957.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZEJ7_9STRA5.120e-1631.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0QBA5_9EUKA2.730e-1334.05Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A6T9D2F6_9EUKA9.030e-1230.67Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A0M0K0F2_9EUKA2.390e-1130.77Membrane protein n=1 Tax=Chrysochromulina tobinii ... [more]
A0A6T0A215_CHRCT3.930e-1129.84Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2X718_9EUKA5.710e-929.34Hypothetical protein n=3 Tax=Lotharella TaxID=7481... [more]
R1FD01_EMIHU1.720e-829.06Uncharacterized protein (Fragment) n=3 Tax=Emilian... [more]
A0A7S4DSS3_9EUKA3.130e-829.05Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2IDZ6_9STRA4.990e-827.91Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4899contigH-elongata_contig4899:7541..10823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue4.9e-13
Seed eggNOG ortholog2880.D8LDM2
EggNOG free text desc.Protein of unknown function (DUF1517)
EggNOG OGs2QUI9@2759,COG4371@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1517
Ec32 orthologEc-21_001970.1
Exons4
Model size2170
Cds size1464
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4899.12072.1prot_H-elongata_contig4899.12072.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4899 7645..10221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930805.9106338-UTR-H-elongata_contig4899:7540..76441622930805.9106338-UTR-H-elongata_contig4899:7540..7644Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4899 7541..7644 +
1691679578.1015391-UTR-H-elongata_contig4899:7540..76441691679578.1015391-UTR-H-elongata_contig4899:7540..7644Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4899 7541..7644 +
1622930805.996548-UTR-H-elongata_contig4899:10221..108231622930805.996548-UTR-H-elongata_contig4899:10221..10823Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4899 10222..10823 +
1691679578.1644185-UTR-H-elongata_contig4899:10221..108231691679578.1644185-UTR-H-elongata_contig4899:10221..10823Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4899 10222..10823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930805.9296348-CDS-H-elongata_contig4899:7644..85291622930805.9296348-CDS-H-elongata_contig4899:7644..8529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4899 7645..8529 +
1691679578.11313-CDS-H-elongata_contig4899:7644..85291691679578.11313-CDS-H-elongata_contig4899:7644..8529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4899 7645..8529 +
1622930805.9440963-CDS-H-elongata_contig4899:8904..89801622930805.9440963-CDS-H-elongata_contig4899:8904..8980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4899 8905..8980 +
1691679578.131058-CDS-H-elongata_contig4899:8904..89801691679578.131058-CDS-H-elongata_contig4899:8904..8980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4899 8905..8980 +
1622930805.9606602-CDS-H-elongata_contig4899:9284..96241622930805.9606602-CDS-H-elongata_contig4899:9284..9624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4899 9285..9624 +
1691679578.1427982-CDS-H-elongata_contig4899:9284..96241691679578.1427982-CDS-H-elongata_contig4899:9284..9624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4899 9285..9624 +
1622930805.9767377-CDS-H-elongata_contig4899:10058..102211622930805.9767377-CDS-H-elongata_contig4899:10058..10221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4899 10059..10221 +
1691679578.1534815-CDS-H-elongata_contig4899:10058..102211691679578.1534815-CDS-H-elongata_contig4899:10058..10221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4899 10059..10221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4899.12072.1

>prot_H-elongata_contig4899.12072.1 ID=prot_H-elongata_contig4899.12072.1|Name=mRNA_H-elongata_contig4899.12072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=488bp
MTHASFVSPRIAFYAPPAPPPNLNFPTRKGLTPSRWPRCCPGATIVLCAE
AAGNVEWDIWDTVGDDAERGNNTIGEGDNLPRRKESKPSRVAVIAQAVMF
AVGAVGAGFQPLAAAVTGGRISGGYTLPDRAPSPPPTQQQQQYQAPPQQY
TPPSAGRDIRGAGDSRVHIDFRGKEGSRRGNRIRVNPGVEKSTSDAISAG
DVAVIGGFTTGVMAIQRYNRRRFLQESGGGYESGSSTSAAVDGHLGKETA
VVTSLQLSMFCDRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTL
LRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRE
RSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVVAWARLRS
ISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAE
GRGENLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI*
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mRNA from alignment at H-elongata_contig4899:7541..10823+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4899.12072.1 ID=mRNA_H-elongata_contig4899.12072.1|Name=mRNA_H-elongata_contig4899.12072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3283bp|location=Sequence derived from alignment at H-elongata_contig4899:7541..10823+ (Himanthalia elongata Himel1 dioecious)
CATTCGTCGAGAGTGTGTTATTGTTTGTGAATCATATAGGGTGGATTGTT CCCATCAGGAGAGAAACCATTACCACTACCACTATATTCACCGTGGCAGT ACCGATGACTCATGCTTCATTCGTGTCACCAAGGATAGCTTTCTACGCTC CTCCAGCTCCTCCTCCCAACCTCAACTTCCCCACTAGAAAAGGTTTAACA CCATCGCGGTGGCCACGTTGCTGTCCAGGGGCTACCATTGTATTATGTGC CGAGGCCGCTGGAAATGTTGAGTGGGATATATGGGATACGGTTGGCGATG ATGCGGAGAGAGGCAATAATACAATCGGAGAGGGTGACAACTTACCTCGT CGCAAAGAGTCTAAACCAAGTCGAGTCGCCGTCATCGCGCAGGCGGTCAT GTTCGCGGTGGGGGCGGTGGGGGCCGGCTTCCAGCCTTTAGCAGCTGCAG TTACCGGAGGAAGAATAAGTGGAGGATATACATTACCTGACCGCGCGCCT AGCCCTCCTCCAACTCAGCAACAGCAGCAGTATCAGGCTCCTCCGCAGCA GTACACGCCGCCCAGCGCGGGTCGAGATATCCGTGGCGCCGGTGACAGCC GCGTCCACATCGACTTCCGAGGGAAGGAAGGAAGTCGTCGTGGCAACCGC ATCCGCGTCAACCCTGGCGTCGAGAAATCAACATCTGATGCTATCTCCGC AGGCGACGTGGCAGTGATTGGAGGCTTCACCACGGGTGTCATGGCCATTC AGCGCTACAATCGGAGGCGTTTTCTTCAAGAGAGCGGAGGCGGTTATGAA AGCGGATCAAGCACATCAGCTGCGGTAGACGGACATCTCGGTAAAGAAAC GGCCGTGGTGACTTCCCTGCAACTGTCGATGTTCTGCGATCGGCAGGCAG GGAAATGGGGTATTTTGACCGCGCTAGAAGATTTGTCACGGACGGCGAAT GTCAAGAGTCCGAGGGGGCTGTCGGTCCTTGTCAGTGAGGTACAGTATAC GCGACCACTTACATGTAGCGCAAGATTCGCAGGCGCCATAGTCGAAGCAC CCATGTGTGCTCGACGCATCACGGTGCTCTTATAATGACACAATATAATG GTCTCCGTGTCGACTTTGGGACGTGGTTGCGAAGGATACGACCGCGTTAT TGTTAACCAGTAATTTCAAAGGCGGATTTCGTTGAGGCGAGCGTTGCAGA ATAGTGGCACTGAGATGCAGCATCAACTTTTCCGAAACGTAGATACTCTC ACGTAGTAAAACTGAATCAGTTGTGTGCGGGTCTCCGCCGCCTATTCTCG GCAGTCGACCAGTACTGAGCGAGATAGCTCCAATCGCAGCTATCGCGCTG TATCGCATTCTCAGGTATGTCTGACCCTGCTGCGAGCTGAAAGGGACTGG ATCGGAGCGGCCGGAAGCATCAAGGAATATCGCCCCCATGGTCTGTTTTT GTTGACGACTCACGACGTCAGCACTAAAGGCGTGATGTCTTTATAATCAT CTCTTCGCGCGAATTAATGCTGAGCCTCTCGACGAAACATGTCATTCCCT CCACGAGTTTTCAGCTTTGAATTTTCGGCGTCTCCGGTGAACTCTCTGGC CATTTTTGCTGATTTTTCGCCAATCGCCCATTTCATGTAAATGGCAGCGA TCGGCTTATCATGTTCACATGATCAATAGAGGCTCCTTGTTCGGTATTCC TCCTGTTCCTTATATACCTCCTATTACTTGTATTCTCCACATAGTGCGTG GCGCTAGAAAGGGAAAGAAGAATGAGAGCAGCAGGCCTAGCTCGAGGGCA AAGCGAGACTTCAATCGAGCAGTCACGCGAGAGCGATCGAAGTGGGAACG AGAAACCGTTTATAACACCCCTGACCAGGGCTTCAGCAGCAGCAACAAGG CTCCAGGACGGAGAGGTCTTGGTGTGCCAGACAGCACGTATGCGGTGGCG ACGTTAGTGGTCGCCTGGGCAAGATTGAGGAGCATTTCCCCAACGTCCGA AACCCGCAAGAGTACTCGGCGATGGCTGGAGGGCGACAACCGCGACGACC ATGACCGGGATGTTGTATTCACCGTGGTGAACAGGTAAACATATTACATA TTACTATCACTTTGTTCGGAGAACATCGCAAACGCTCTAGGCGGTTGAAG TCATCGTTCAAATGCATGTGGTCATACAACGAGGGATACCGCGCGAAAGG GATTGCTCTGTCGTAACGCGTTGGACGTCAAGCACAACGCTCACAACGTC ATTGCTCTCAACTCGATCATTGCTCTTTCAAAATAATTTGTCTGCTTGGT AGATACTCCGTCGTAGCCTTTCACCCCCGACTTGGAGATATGAATAGAGT TTAGACCACTAGACGATTGCGAATCGTTCTGTAAAAATATTTGCTCTTCT AGCCGATGGAAGCCCCACCTTTGTAAGTAAATTATGTTGGGCCTCAAAGC GAGCGGGAGAGCCGCCGATGTATTTTCTACGTATTACACGCCCCTCCTTC ACGAACGCCTGTGAGCAGAAAGTCGGTGATTACGTTCCTGGAGTGGATCG TCGAAGAAGCTGCAGAGGGACGGGGGGAGAATTTGCTGGATGTAGAGGTA TTGTGGACCCCGGCAGATCCGGATGACTCGCTCGACAGAGACGACCTGGA CGTCAAATGGCCAGAGCTTAGAGGAATCTGATGTTTAGGGTCTTGTAGTT TAGACGTCCTCAACTGGTGTACAACTAAATTCTCAAAAGCACCACACGCA GGTGACCGTTGGGCGTCGAGCCAAATATTTCAGTACAGGGGAGAGAAGCA TCCTGTTTAGGGATATTTCGTTTTCTTCATTTGTAGACAGGGGGATGGCG TACTCGAGTTTTGCACGCCTTAGCTGTTAGAGCATTATCTGAGCGACAAA CGGGCTCCACAATACAAGACACATGTAGATATTATGTGTGTTGTGGGGAA TGAAGATCGTACTCTCTATATACAGAGTTCGATTTTGGACACGCCCATTT TAGAAGGGGAATATCATCACCGCTGTTGTCCGTACCACGGTATGTCACGG ACGCGGCAAAACTAATTCCTCTCTATCGACGGCAAGAAGACTCAAGGAAG GAGTACATCTGTTGAGCGCCTCGTTTTACACTATTAATGCACGCCGCTGG CATGAACGGGGATTAAATCGGATCATCCGTGGTAGCCGAGGCACATCCGT AAGCTTTCTTTGTTTTCAACGATTTGAAATATTTGACCCTCCATTTCTCT GCCTTGTAGAGAACGTATTCGCCGAAAAAGACC
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Coding sequence (CDS) from alignment at H-elongata_contig4899:7541..10823+

>mRNA_H-elongata_contig4899.12072.1 ID=mRNA_H-elongata_contig4899.12072.1|Name=mRNA_H-elongata_contig4899.12072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2928bp|location=Sequence derived from alignment at H-elongata_contig4899:7541..10823+ (Himanthalia elongata Himel1 dioecious)
ATGACTCATGCTTCATTCGTGTCACCAAGGATAGCTTTCTACGCTCCTCC
AGCTCCTCCTCCCAACCTCAACTTCCCCACTAGAAAAGGTTTAACACCAT
CGCGGTGGCCACGTTGCTGTCCAGGGGCTACCATTGTATTATGTGCCGAG
GCCGCTGGAAATGTTGAGTGGGATATATGGGATACGGTTGGCGATGATGC
GGAGAGAGGCAATAATACAATCGGAGAGGGTGACAACTTACCTCGTCGCA
AAGAGTCTAAACCAAGTCGAGTCGCCGTCATCGCGCAGGCGGTCATGTTC
GCGGTGGGGGCGGTGGGGGCCGGCTTCCAGCCTTTAGCAGCTGCAGTTAC
CGGAGGAAGAATAAGTGGAGGATATACATTACCTGACCGCGCGCCTAGCC
CTCCTCCAACTCAGCAACAGCAGCAGTATCAGGCTCCTCCGCAGCAGTAC
ACGCCGCCCAGCGCGGGTCGAGATATCCGTGGCGCCGGTGACAGCCGCGT
CCACATCGACTTCCGAGGGAAGGAAGGAAGTCGTCGTGGCAACCGCATCC
GCGTCAACCCTGGCGTCGAGAAATCAACATCTGATGCTATCTCCGCAGGC
GACGTGGCAGTGATTGGAGGCTTCACCACGGGTGTCATGGCCATTCAGCG
CTACAATCGGAGGCGTTTTCTTCAAGAGAGCGGAGGCGGTTATGAAAGCG
GATCAAGCACATCAGCTGCGGTAGACGGACATCTCGGTAAAGAAACGGCC
GTGGTGACTTCCCTGCAACTGTCGATGTTCTGCGATCGGCAGGCAGGGAA
ATGGGGTATTTTGACCGCGCTAGAAGATTTGTCACGGACGGCGAATGTCA
AGAGTCCGAGGGGGCTGTCGGTCCTTGTCAGTGAGATGACTCATGCTTCA
TTCGTGTCACCAAGGATAGCTTTCTACGCTCCTCCAGCTCCTCCTCCCAA
CCTCAACTTCCCCACTAGAAAAGGTTTAACACCATCGCGGTGGCCACGTT
GCTGTCCAGGGGCTACCATTGTATTATGTGCCGAGGCCGCTGGAAATGTT
GAGTGGGATATATGGGATACGGTTGGCGATGATGCGGAGAGAGGCAATAA
TACAATCGGAGAGGGTGACAACTTACCTCGTCGCAAAGAGTCTAAACCAA
GTCGAGTCGCCGTCATCGCGCAGGCGGTCATGTTCGCGGTGGGGGCGGTG
GGGGCCGGCTTCCAGCCTTTAGCAGCTGCAGTTACCGGAGGAAGAATAAG
TGGAGGATATACATTACCTGACCGCGCGCCTAGCCCTCCTCCAACTCAGC
AACAGCAGCAGTATCAGGCTCCTCCGCAGCAGTACACGCCGCCCAGCGCG
GGTCGAGATATCCGTGGCGCCGGTGACAGCCGCGTCCACATCGACTTCCG
AGGGAAGGAAGGAAGTCGTCGTGGCAACCGCATCCGCGTCAACCCTGGCG
TCGAGAAATCAACATCTGATGCTATCTCCGCAGGCGACGTGGCAGTGATT
GGAGGCTTCACCACGGGTGTCATGGCCATTCAGCGCTACAATCGGAGGCG
TTTTCTTCAAGAGAGCGGAGGCGGTTATGAAAGCGGATCAAGCACATCAG
CTGCGGTAGACGGACATCTCGGTAAAGAAACGGCCGTGGTGACTTCCCTG
CAACTGTCGATGTTCTGCGATCGGCAGGCAGGGAAATGGGGTATTTTGAC
CGCGCTAGAAGATTTGTCACGGACGGCGAATGTCAAGAGTCCGAGGGGGC
TGTCGGTCCTTGTCAGTGAGGTATGTCTGACCCTGCTGCGAGCTGAAAGG
GACTGGATCGGAGCGGCCGGAAGCATCAAGGAATATCGCCCCCATGGTAT
GTCTGACCCTGCTGCGAGCTGAAAGGGACTGGATCGGAGCGGCCGGAAGC
ATCAAGGAATATCGCCCCCATGTGCGTGGCGCTAGAAAGGGAAAGAAGAA
TGAGAGCAGCAGGCCTAGCTCGAGGGCAAAGCGAGACTTCAATCGAGCAG
TCACGCGAGAGCGATCGAAGTGGGAACGAGAAACCGTTTATAACACCCCT
GACCAGGGCTTCAGCAGCAGCAACAAGGCTCCAGGACGGAGAGGTCTTGG
TGTGCCAGACAGCACGTATGCGGTGGCGACGTTAGTGGTCGCCTGGGCAA
GATTGAGGAGCATTTCCCCAACGTCCGAAACCCGCAAGAGTACTCGGCGA
TGGCTGGAGGGCGACAACCGCGACGACCATGACCGGGATGTTGTATTCAC
CGTGGTGAACAGTGCGTGGCGCTAGAAAGGGAAAGAAGAATGAGAGCAGC
AGGCCTAGCTCGAGGGCAAAGCGAGACTTCAATCGAGCAGTCACGCGAGA
GCGATCGAAGTGGGAACGAGAAACCGTTTATAACACCCCTGACCAGGGCT
TCAGCAGCAGCAACAAGGCTCCAGGACGGAGAGGTCTTGGTGTGCCAGAC
AGCACGTATGCGGTGGCGACGTTAGTGGTCGCCTGGGCAAGATTGAGGAG
CATTTCCCCAACGTCCGAAACCCGCAAGAGTACTCGGCGATGGCTGGAGG
GCGACAACCGCGACGACCATGACCGGGATGTTGTATTCACCGTGGTGAAC
AGAAAGTCGGTGATTACGTTCCTGGAGTGGATCGTCGAAGAAGCTGCAGA
GGGACGGGGGGAGAATTTGCTGGATGTAGAGGTATTGTGGACCCCGGCAG
ATCCGGATGACTCGCTCGACAGAGACGACCTGGACGTCAAATGGCCAGAG
CTTAGAGGAATCTGAAAAGTCGGTGATTACGTTCCTGGAGTGGATCGTCG
AAGAAGCTGCAGAGGGACGGGGGGAGAATTTGCTGGATGTAGAGGTATTG
TGGACCCCGGCAGATCCGGATGACTCGCTCGACAGAGACGACCTGGACGT
CAAATGGCCAGAGCTTAGAGGAATCTGA
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