mRNA_H-elongata_contig48753.12042.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48753.12042.1
Unique NamemRNA_H-elongata_contig48753.12042.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48753.12042.1 vs. uniprot
Match: D7G793_ECTSI (Mannitol 1-phosphate dehydrogenase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G793_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.920e-6
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 3 
Query:  435 EKVYRADDVLVRESDIAACKPFDECDTSPEALGTAFG 545
            ++VY+ADD +VRESDI  C+ +DECD SPE LGT FG
Sbjct:   18 KQVYKADDTIVRESDIENCRTYDECDLSPETLGTPFG 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48753.12042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G793_ECTSI1.920e-664.86Mannitol 1-phosphate dehydrogenase, partial n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48753contigH-elongata_contig48753:431..3451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size550
Cds size525
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48753.12042.1prot_H-elongata_contig48753.12042.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48753 431..3428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930802.7653434-CDS-H-elongata_contig48753:430..4851622930802.7653434-CDS-H-elongata_contig48753:430..485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48753 431..485 -
1691679576.6616023-CDS-H-elongata_contig48753:430..4851691679576.6616023-CDS-H-elongata_contig48753:430..485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48753 431..485 -
1622930802.779651-CDS-H-elongata_contig48753:1328..13811622930802.779651-CDS-H-elongata_contig48753:1328..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48753 1329..1381 -
1691679576.673449-CDS-H-elongata_contig48753:1328..13811691679576.673449-CDS-H-elongata_contig48753:1328..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48753 1329..1381 -
1622930802.7931395-CDS-H-elongata_contig48753:3011..34281622930802.7931395-CDS-H-elongata_contig48753:3011..3428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48753 3012..3428 -
1691679576.68291-CDS-H-elongata_contig48753:3011..34281691679576.68291-CDS-H-elongata_contig48753:3011..3428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48753 3012..3428 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930802.8077586-UTR-H-elongata_contig48753:3428..34511622930802.8077586-UTR-H-elongata_contig48753:3428..3451Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48753 3429..3451 -
1691679576.6939917-UTR-H-elongata_contig48753:3428..34511691679576.6939917-UTR-H-elongata_contig48753:3428..3451Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48753 3429..3451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48753.12042.1

>prot_H-elongata_contig48753.12042.1 ID=prot_H-elongata_contig48753.12042.1|Name=mRNA_H-elongata_contig48753.12042.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
MFISAHPPPPGDTLRLPMQVPARVAMERVTARPLRRSPCRAMLLALGALS
WAPRSSLAFWFNLPFAPHRHAILVTAGFYSPAANNPRSDSDHGPARLTGW
PECSSGRQRCSRLTRMCSGLRLMMAAAPGESGSSAQTEKVYRADDVLVRE
SDIAACKPFDECDTSPEALGTAFGG
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mRNA from alignment at H-elongata_contig48753:431..3451-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48753.12042.1 ID=mRNA_H-elongata_contig48753.12042.1|Name=mRNA_H-elongata_contig48753.12042.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3021bp|location=Sequence derived from alignment at H-elongata_contig48753:431..3451- (Himanthalia elongata Himel1 dioecious)
GAGCAGTTAGTTGCACGAAAAAAATGTTTATAAGTGCGCATCCGCCACCA
CCTGGCGACACCTTGCGGCTACCCATGCAAGTTCCAGCAAGGGTGGCTAT
GGAGAGGGTAACGGCAAGACCTCTGCGTCGCTCGCCTTGCCGGGCGATGC
TGCTCGCTCTGGGCGCATTGTCTTGGGCGCCTCGATCGTCCCTTGCGTTT
TGGTTCAACCTGCCGTTCGCTCCACATCGACACGCGATCCTCGTTACAGC
TGGTTTCTACTCGCCTGCCGCCAACAATCCGAGAAGTGACAGCGATCATG
GCCCAGCGAGACTCACTGGATGGCCGGAATGCAGCTCAGGAAGGCAGAGA
TGTTCCCGACTGACGCGGATGTGCAGTGGGCTACGCTTGATGATGGCGGC
AGCGCCGGGAGAGTCGGGATCCTCCGCTCAGACGGAGAAGGTATGTATGT
ATGCTGTGTGCGTACTTGGGCCCGACATGATCGGCGTGTGATGTGGATTC
ATGTCCGATTCATGTTTATGTTTGATTGCGCCTCCTACCCCTGCGTCCCG
ACCATTCCCCTCCCCTCCTCTCCTGAATGCTAAGCCGTGGCTTGTACCGC
GTTGTTGCCGTTGTTTAGGGTGGGTCTATTCCAGAGGCCGACGAGGCACT
CTGCCGCTCAAAGCTCTCATTCGGTCACGAAAGCGAGGATGCCTCAATCA
TTCGATTTTGAACTCCCCTCGATTTTTTGTCTGCCAAGGGATAGCGTCCC
TCTCGTTTTGGAGTCGTTTTATTGTTATTATTATAAAATGTATATATTAT
TATTTTTTATTTATTTTTTATTTAAAAGACTTTTTTTTTCTTTTTTTTCA
GAAAGCGCATGCAACTGTCTATGTTTGTGATCTGGAGAAACATAAGCTCG
TAGACCTCAATGTTGTTGTAAAAAAGCGACAACATCCAGTCATTCAGTGT
CGTCATGAACATGCTTCGCATGACGTGAGTTACGAGGTTCGATCTCCCTC
ACCCCACCCAACAACGACAGCTCATCCCCCGTCCCTCACCCCCTCTTTTT
TTGCTATCGACTGACTGACTGACTGCTGTTGATGAGTCCCACTATACTGT
ATGTGGTATGTTTTTTCCTACTGTAATATATATGATCCACACACGTAGGC
TCTTGGCATTTGGCATATTCATTTTGAGATCACCCACGAGAAGATCCAGT
ACTGTACTGTACTGTACTGTACTGTACTACATCCAGCATCACTCTACATT
ACATGGTAGTTTCTTTCTTTTTTCTTGGGATAAACTAATGAATATACCAG
GTACAGTATGATGATAGTCACCTTCCACCCTCGGGGTCAACGTAAGGTGT
AAGGTGTAACGTAAGGTGTAAGGTAAGGGATGGATGATGGATGATGGATG
ATGGACGATGGACCCCATTCAAGTGTTTTCTCTTGAAGGTGAGCAATGTC
AATGCGCCATTCCTCCGTCCTCCTTAAGAGGGTGATGATGTCGTGACAGT
CCGTCGTCGGGTAAGGTAAAAGCACCTTACACCCCCAACACCCCCAACAG
TGTCATTAGTACGTTGCCTTCTAGCTCGACTCAGTACGCGACTCACCGTG
CCCACTCGGGCTTCGGTCCTTGGGCTGTCCATGATGTTGTACTGATACTA
GCACTGATACTGATACTGGTACTGGTACACCGATGGCAACGACAGCTCAG
CAGTCGCGGCACCCAAAAGCTCCCCCCCCCCCACACCTCCTTTATGTTTT
GCTTTTCACGTGAGATAGATCGATCGATCGATCCTGTCTGAATGTGTTTC
GAAATACTTTGTATGTCAGGTAAAATAACACGAAGACTGAATGAATGAAT
GAATGTCACAAGCACTTGGCTGTGTCGTGACTGCTGAGCTGTCCTCACGT
TGTGATATCAACCACGACAATACCTCGGGTTCGTCTTGAACGATGGAACA
ATTCTTCGCGGTTTTGCCCTGCTTTGCTTTGCTTTGCCCTTTTCGTCCCT
CCCAAGCGACCGACACGCATATATCCGCCCGTTTCTGGCGTTCGTAATGT
TCGAATCCAAAACGCCACAGGTGTACCGGGCTGACGACGTTCTTGTTCGG
GAGTCCGACATCGCGGCTTGCAAGTGAGACATACACCCCCACCCATACAT
AAACGCATATACACAAACGCCGTCTCCGATACTATACTGTCTGTGACTGT
ATCGCACAGGCGTGCAATAATTTGTTCATGGAGTTTACTCAAGCTACCTT
GAGAACTACTGGCTGGATTGTGCGGTTATGTGCAATTTAATGGATACACA
TACACACAAACAAACATGCACAACCATGGCAAGACTCCTTGTACGATTTA
ACGATTTCAATGAAATGATTCGTGAAAGTGTTGAAAGCCTTGAAAGGGGA
AGAAGGCGGTACCATTTGGGGAGGGGAAGGGAGGCGAGTGTGAAAGTAAG
CATTCGTTTATCAGCAGAGACGTCGCGATCGGTTTTGTGTCGACCCGTTT
TGAAGACGAATGGCTACCCACAACGAGCAACTCATTTGACCCAACACAGG
GCTATATATGTACTCTAGACTAGGTATGTATTTATGTTTTTGCTCTTGAT
GCCTTATGTTACCCTGGAGAGGAAACCATACGCGACGCGCGATTTCGATT
CATAATTGCGGGCGATTTTGTTTACCAGCAACGGTGTGATCATCACTTTG
ATCGCCAGGGCCATATTCATGGTCCAAGACAAGGTGTCCTCAAGAATGAC
GAACAAAGAAAGTATTCGCCCTTCTCTAAAGCGTCGACGCAAACCGTGAT
CGAAGATGACGTCATCTCTCTATTGCCCCCCACGTGCGAGGCGCTCTCGT
TAGACTGAACGGTCTGTAGTAGCGTAGACACTCACATGGCGCATTCATAC
CACTCATACCACTAATAGCGTGCCTCGTATCTCTGTGCACGCCCGTGACG
GAAATCTCTCGCGCAGGCCGTTTGACGAATGCGACACTTCGCCCGAAGCG
CTCGGGACGGCTTTCGGGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig48753:431..3451-

>mRNA_H-elongata_contig48753.12042.1 ID=mRNA_H-elongata_contig48753.12042.1|Name=mRNA_H-elongata_contig48753.12042.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig48753:431..3451- (Himanthalia elongata Himel1 dioecious)
ATGTTTATAAGTGCGCATCCGCCACCACCTGGCGACACCTTGCGGCTACC
CATGCAAGTTCCAGCAAGGGTGGCTATGGAGAGGGTAACGGCAAGACCTC
TGCGTCGCTCGCCTTGCCGGGCGATGCTGCTCGCTCTGGGCGCATTGTCT
TGGGCGCCTCGATCGTCCCTTGCGTTTTGGTTCAACCTGCCGTTCGCTCC
ACATCGACACGCGATCCTCGTTACAGCTGGTTTCTACTCGCCTGCCGCCA
ACAATCCGAGAAGTGACAGCGATCATGGCCCAGCGAGACTCACTGGATGG
CCGGAATGCAGCTCAGGAAGGCAGAGATGTTCCCGACTGACGCGGATGTG
CAGTGGGCTACGCTTGATGATGGCGGCAGCGCCGGGAGAGTCGGGATCCT
CCGCTCAGACGGAGAAGATGTTTATAAGTGCGCATCCGCCACCACCTGGC
GACACCTTGCGGCTACCCATGCAAGTTCCAGCAAGGGTGGCTATGGAGAG
GGTAACGGCAAGACCTCTGCGTCGCTCGCCTTGCCGGGCGATGCTGCTCG
CTCTGGGCGCATTGTCTTGGGCGCCTCGATCGTCCCTTGCGTTTTGGTTC
AACCTGCCGTTCGCTCCACATCGACACGCGATCCTCGTTACAGCTGGTTT
CTACTCGCCTGCCGCCAACAATCCGAGAAGTGACAGCGATCATGGCCCAG
CGAGACTCACTGGATGGCCGGAATGCAGCTCAGGAAGGCAGAGATGTTCC
CGACTGACGCGGATGTGCAGTGGGCTACGCTTGATGATGGCGGCAGCGCC
GGGAGAGTCGGGATCCTCCGCTCAGACGGAGAAGGTGTACCGGGCTGACG
ACGTTCTTGTTCGGGAGTCCGACATCGCGGCTTGCAAGTGTACCGGGCTG
ACGACGTTCTTGTTCGGGAGTCCGACATCGCGGCTTGCAAGCCGTTTGAC
GAATGCGACACTTCGCCCGAAGCGCTCGGGACGGCTTTCGGGGGTGCCGT
TTGACGAATGCGACACTTCGCCCGAAGCGCTCGGGACGGCTTTCGGGGGT
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