mRNA_H-elongata_contig48740.12040.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48740.12040.1
Unique NamemRNA_H-elongata_contig48740.12040.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48740.12040.1 vs. uniprot
Match: D7FPV2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV2_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 1.500e-119
Identity = 174/222 (78.38%), Postives = 198/222 (89.19%), Query Frame = 1
Query:    1 LQVDHQGRPREGLISVGSTQGQEPDPLDPDIIQRLDNRFRYRDIPEDYYADEGDNGPHFKRILEWYVDYAGKGVGGMSFLFPVGALRALRRLMTFSNNRGVVISGDKGNNNPEQFRGLVDPHIAVHGSFSVMVNYHAIGAYFTSRGGFALHNPQEEASLKVSTFVLTGETGQALQGDFKGDAIDRKDCERSQRFPHLRAAFRTNVQQFGPNDFFVLQRSIRE 666
             QVD QG+ +EGLISVGSTQ  EPDPLDP+IIQRLDNRF Y+DIP+DYY DE  + PHFKRIL+WYVDYA +G GGMS LFPVGALRALRRLMTFS+NR  VISGDKGNNNPEQF+GL+DPHIAVHGSFSVMVNYH+IGAYFTSRGGFALHNPQEEASLKVSTFVLTG++G    G++ G+A+DRKD ERS +FPHL AAFRTNV+QFGPNDFFV+Q+ ++E
Sbjct:  290 FQVD-QGKAKEGLISVGSTQKDEPDPLDPEIIQRLDNRFSYQDIPDDYYTDEDGDEPHFKRILDWYVDYAAQGSGGMSILFPVGALRALRRLMTFSDNRAFVISGDKGNNNPEQFKGLMDPHIAVHGSFSVMVNYHSIGAYFTSRGGFALHNPQEEASLKVSTFVLTGDSGDDEDGEWTGEAMDRKDSERSSQFPHLEAAFRTNVEQFGPNDFFVMQKCMKE 510          
BLAST of mRNA_H-elongata_contig48740.12040.1 vs. uniprot
Match: A0A7S2D5C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D5C4_9STRA)

HSP 1 Score: 293 bits (751), Expect = 6.570e-93
Identity = 149/229 (65.07%), Postives = 172/229 (75.11%), Query Frame = 1
Query:    1 LQVDHQGRPREGLISVGSTQGQEPDPLDPDIIQRLDNRFRYRDIPEDYYADEGDNGPHFKRILEWYVDYAGKGVGGM-SFLFPVGALRALRRLMTFSNNRGVVISGDKGNNNPEQFRGLVDPHIAVHGSFSVMVNYHAIGAYFTSRGGFALHNPQEEASLKVSTFVLTGET------GQALQGDFKGDAIDRKDCERSQRFPHLRAAFRTNVQQFGPNDFFVLQRSIRE 666
            L  D  G  +EGLISVGS +  EPDPL+P+II+R DN FRY DI  DYY +EG + PH +RIL+WY  Y G   GG  S L P+GA+RA+RRL  F+N R VVISGDKGNNNPEQFRGL+DPHIAVHGSFSVMVNYHAIG+YFTSRGGFALHNPQEEASLKVSTFVLTG+       G    G + GDAI  +   R+   PHL  AF T+V QFGPNDFFVLQ+S++E
Sbjct:  165 LTPDGGGLLKEGLISVGSKRSDEPDPLEPEIIKRFDNHFRYDDISADYYKNEGGDEPHLERILKWYEQYFGSSSGGGGSILLPIGAIRAIRRLGAFTNGRAVVISGDKGNNNPEQFRGLLDPHIAVHGSFSVMVNYHAIGSYFTSRGGFALHNPQEEASLKVSTFVLTGDDTPCPTPGLDEDGSWLGDAISDRSDARASTCPHLCQAFSTSVDQFGPNDFFVLQKSLKE 393          
BLAST of mRNA_H-elongata_contig48740.12040.1 vs. uniprot
Match: A0A7R9YDE7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDE7_9STRA)

HSP 1 Score: 277 bits (709), Expect = 2.370e-86
Identity = 139/225 (61.78%), Postives = 167/225 (74.22%), Query Frame = 1
Query:    1 LQVDHQGRPREGLISVGSTQGQEPDPLDPDIIQRLDNRFRYRDIPEDYYADEGDNGPHFKRILEWYVDYAGKG--VGGMSFLFPVGALRALRRLMTFSNNRGVVISGDKGNNNPEQFRGLVDPHIAVHGSFSVMVNYHAIGAYFTSRGGFALHNPQEEASLKVSTFVLTG-ETGQALQGDFKGDAIDRKDCERSQRFPHLRAAFRTNVQQFGPNDFFVLQRSIRE 666
             QVD QG  +EGLISVGS   +E DPLDP+IIQR DN ++Y  +  DYY  EGD+  H +RIL WY DY  +    GG S L P+GALRALR+L + S  R +VISGDKGNNNPE FRGL DPHIAVHGSFSVMVNYHAIG YFTSRGGFALHNPQEEASLKVS FVL G E        + G+ ++ +D +R+ R+P+LRAAF  ++  FGPNDFFV+Q+S++E
Sbjct:  243 FQVDSQGL-KEGLISVGSKAAEEEDPLDPEIIQRFDNLYKYEPVGTDYYKGEGDDDAHLERILAWYTDYFTQNDESGGASLLVPIGALRALRKLTSMSGGRAIVISGDKGNNNPEHFRGLADPHIAVHGSFSVMVNYHAIGGYFTSRGGFALHNPQEEASLKVSCFVLGGGENDDEDSRPWTGEHLEARDRDRALRWPNLRAAFEQSIVSFGPNDFFVMQKSLKE 466          
BLAST of mRNA_H-elongata_contig48740.12040.1 vs. uniprot
Match: A0A6U3RM50_9STRA (Type II protein arginine methyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3RM50_9STRA)

HSP 1 Score: 278 bits (710), Expect = 6.560e-86
Identity = 143/226 (63.27%), Postives = 172/226 (76.11%), Query Frame = 1
Query:   16 QGRPREGLISVGSTQGQEPDPLDPDIIQRLDNRFRYRDIPEDYYAD-EGDNGPHFKRILEWYVDYAGKGV--GGMSFLFPVGALRALRRLMTFSNNRGVVISGDKGNNNPEQFRGLVDPHIAVHGSFSVMVNYHAIGAYFTSRGGFALHNPQEEASLKVSTFVLTGET-----GQALQGDFKGD-AIDRKDCERSQRFPHLRAAFRTNVQQFGPNDFFVLQRSIRE 666
            +GR  EGLISVGST+ +EPDPLDP+IIQRLDNRF YR+I + YY   EGD+G H +RIL WY D+  K     G S L P+GALRA+RRL   S  R +V+SGDKG+NNPE F GL+DPHIAVHGSFSVMVNYHA+G YFTSRGGFALHNPQEEASLKVS FVLTG+T        L  D+  D A++ +D +R+  FP+L  AFR +V +FGPNDFFVLQ+S++E
Sbjct:  261 EGRLTEGLISVGSTRAKEPDPLDPEIIQRLDNRFEYREITDRYYMPTEGDDGEHLQRILGWYRDHFQKNHPNDGASILLPIGALRAIRRLTALSAGRCLVLSGDKGHNNPEHFTGLLDPHIAVHGSFSVMVNYHAVGMYFTSRGGFALHNPQEEASLKVSAFVLTGDTTSNDDNNGLVLDWSTDGAVEERDWDRAAAFPNLSIAFRDSVDRFGPNDFFVLQKSLKE 486          
BLAST of mRNA_H-elongata_contig48740.12040.1 vs. uniprot
Match: A0A835Z6J8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J8_9STRA)

HSP 1 Score: 277 bits (708), Expect = 2.400e-85
Identity = 141/231 (61.04%), Postives = 167/231 (72.29%), Query Frame = 1
Query:   28 REGLISVGSTQGQEPDPLDPDIIQRLDNRFRYRDIPEDYYADEGDNGPH-------------FKRILEWYVDYAGKGVGGMSFLFPVGALRALRRLMTFSNNRGVVISGDKGNNNPEQFRGLVDPHIAVHGSFSVMVNYHAIGAYFTSRGGFALHNPQEEASLKVSTFVLTGETGQAL-----QGDFKGDAIDRKDCERSQRFPHLRAAFRTNVQQFGPNDFFVLQRSIRE 666
            +EGLISVGS +  E DPLDP+II+R DN+F YRDI EDYY  E  +                F+RIL WYVD+      G S LFP+GALRALRRL++FS NR +VISGDKGNNNP+QFRGL DPHIAVHGSFSVMVNYHAIGAYFT+RGGFALHNPQEEASLKVS FV TG+   A       G + G A + KD  RS+ FP+L  AF+ +V+ FGPNDFFV+Q+ ++E
Sbjct:  276 KEGLISVGSKRPAEADPLDPEIIKRFDNKFCYRDISEDYYKGEEIDAIXXXXXXXXXXXXVTFRRILHWYVDHFSPSPAGASILFPIGALRALRRLLSFSGNRAIVISGDKGNNNPDQFRGLADPHIAVHGSFSVMVNYHAIGAYFTARGGFALHNPQEEASLKVSAFVATGDVHAAGGVTADDGQWTGGAFEAKDEARSRLFPNLAGAFKYHVEHFGPNDFFVMQKGLKE 506          
BLAST of mRNA_H-elongata_contig48740.12040.1 vs. uniprot
Match: A0A4D9D744_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D744_9STRA)

HSP 1 Score: 256 bits (653), Expect = 6.200e-79
Identity = 141/268 (52.61%), Postives = 164/268 (61.19%), Query Frame = 1
Query:   28 REGLISVGSTQGQEPDPLDPDIIQRLDNRFRYRDIPEDYYA------------------------DEGDNGP-------HFKRILEWYVDYAGKGVGGMSFLFPVGALRALRRLMTFSNNRGVVISGDKGNNNPEQFRGLVDPHIAVHGSFSVMVNYHAIGAYFTSRGGFALHNPQEEASLKVSTFVLTGETG------------------------QALQGDFKGDAIDRKDCERSQRFPHLRAAFRTNVQQFGPNDFFVLQRSIRE 666
            +EGLISVGS Q QEPDPLDP+II+R  N F+Y+ +  DYYA                          G NG        H  RIL WY DY G+   G SFLFP+GALRALRRL+ FSN+RG+VISGDKG+N  EQFRGLVDPHIAVHGSFSVMVNYHAIG YF SRGGFALHNPQE+ASLKVS FVL+G  G                              + G   + +  +R + FP LRAAF + V  FGPNDFFVLQ+S++E
Sbjct:  104 KEGLISVGSKQAQEPDPLDPEIIKRFHNLFKYQPVTPDYYAHTHQPAXXXXXXXXGSPPSSSEPLSAGTNGSSDREDSLHLGRILHWYRDYFGRSSTGGSFLFPIGALRALRRLLAFSNDRGLVISGDKGSNQAEQFRGLVDPHIAVHGSFSVMVNYHAIGLYFISRGGFALHNPQEDASLKVSAFVLSGRAGPPEIPSEDPPPKAHSPMTATTSCLDTSPSSWAGCGAESEGEKRMRAFPCLRAAFSSAVDHFGPNDFFVLQKSMKE 371          
BLAST of mRNA_H-elongata_contig48740.12040.1 vs. uniprot
Match: W7TM08_9STRA (Tetratricopeptide repeat family protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM08_9STRA)

HSP 1 Score: 259 bits (661), Expect = 1.290e-78
Identity = 147/277 (53.07%), Postives = 169/277 (61.01%), Query Frame = 1
Query:    1 LQVDHQGRPREGLISVGSTQGQEPDPLDPDIIQRLDNRFRYRDIPEDYYA------------------------DEGDNGP-------HFKRILEWYVDYAGKGVGGMSFLFPVGALRALRRLMTFSNNRGVVISGDKGNNNPEQFRGLVDPHIAVHGSFSVMVNYHAIGAYFTSRGGFALHNPQEEASLKVSTFVLTGETG------------------------QALQGDFKGDAIDRKDCERSQRFPHLRAAFRTNVQQFGPNDFFVLQRSIRE 666
             QVD  G  +EGLISVGS Q QEPDPLDP+II+R  N F+Y+ +  DYYA                          G NG        H  RIL WY DY G+   G SFLFP+GALRALRRL+ FSN+RG+VISGDKG+N  EQFRGLVDPHIAVHGSFSVMVNYHAIG YF SRGGFALHNPQE+ASLKVS FVL+G  G                              + G   + +  +R + FP LRAAF T V QFGPNDFFVLQ+S++E
Sbjct:  258 FQVDG-GVLKEGLISVGSKQAQEPDPLDPEIIKRFHNLFQYQPVTPDYYAHTHQPAXXXXXXXXGSPPSSSEPLSAGTNGSSDREDSLHLGRILHWYRDYFGRSSTGGSFLFPIGALRALRRLLAFSNDRGLVISGDKGSNQAEQFRGLVDPHIAVHGSFSVMVNYHAIGLYFISRGGFALHNPQEDASLKVSAFVLSGRAGPPESPSEDSPPEAHSPVTTTTSCLDTSPSSWAGPNAESEGEKRVRAFPCLRAAFSTAVDQFGPNDFFVLQKSMKE 533          
BLAST of mRNA_H-elongata_contig48740.12040.1 vs. uniprot
Match: F0YMM3_AURAN (Type II protein arginine methyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMM3_AURAN)

HSP 1 Score: 251 bits (642), Expect = 4.510e-77
Identity = 133/250 (53.20%), Postives = 165/250 (66.00%), Query Frame = 1
Query:    1 LQVDHQGRPREGLISVGSTQGQEPDPLDPDIIQRLDNRFRYRDIPEDYYAD-EGDNGPHFKRILEWYVDYAGKGVGGMSFLFPVGALRALRRLMTFSNNRGVVISGDKGNNNPEQFRGLVDPHIAVHGSFSVMVNYHAIGAYFTSRGGFALHNPQEEASLKVSTFVLTGETG-------------------QALQGDFK--------GDAIDRKDCERSQRFPHLRAAFRTNVQQFGPNDFFVLQRSIRE 666
             QV++ G  +EGLISVGS +  E DPLDP+II+R DN+F+YR + EDYY   E ++  HFKRIL WY D+ G    G S L P+GALRALRRL +F+  R +V+SGDKGNNN EQFRGL+DPH+AVHGSFSVMVNYHAIG Y TSR GF LH+PQEEASLKVS  V TGE+                    +A    F         G+ ++R    RS  FP+L   FR ++  FGPNDFFV+Q+S++E
Sbjct:  183 FQVEN-GELKEGLISVGSRKDLEDDPLDPEIIKRFDNQFQYRVVDEDYYTKLEVEDARHFKRILRWYRDFFGNSQSGASILLPIGALRALRRLTSFAGGRALVLSGDKGNNNHEQFRGLMDPHVAVHGSFSVMVNYHAIGLYCTSRSGFVLHDPQEEASLKVSALVFTGESSTCSPLSDSADRTYAKCVETRASSSSFDLCETQAWTGNEVERLSAARSIAFPYLCRTFRDSIISFGPNDFFVMQKSMKE 431          
BLAST of mRNA_H-elongata_contig48740.12040.1 vs. uniprot
Match: G4Z4F3_PHYSP (Type II protein arginine methyltransferase n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z4F3_PHYSP)

HSP 1 Score: 252 bits (644), Expect = 2.820e-76
Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1
Query:    1 LQVDHQGRPREGLISVGSTQGQEPDPLDPDIIQRLDNRFRYRDIPEDYYADEGDNGPHFKRILEWYVDYAGKGVGGMSFLFPVGALRALRRLMTFSNNRGVVISGDKGNNNPEQFRGLVDPHIAVHGSFSVMVNYHAIGAYFTSRGGFALHNPQEEASLKVSTFVLTG------ETGQALQGDFKGDAIDRKDCERSQRFPHLRAAFRTNVQQFGPNDFFVLQRSIRE 666
             QVD  G  +EGL+SVGS + +EPDPLDP+II+RL+N F+Y  I E YY   G+  PH   IL+WY +Y      G + L P+GAL A+ RL   S N  V +SGDKGNNNP+ FRG+ DPHIAVHGSFSVMVNYHAIG YF SRGGFALH+PQEEASLKVS FVL        ET  +   +  GD +DR   +RS +FPHL  AF  ++  FGPNDFFV+Q+S +E
Sbjct:  274 FQVDG-GVLKEGLVSVGSKRAEEPDPLDPEIIKRLNNIFKYEQIDETYY---GETRPHCNNILKWYHEYFDPASSGATILVPIGALSAIERLAALSKNGLVALSGDKGNNNPDHFRGVSDPHIAVHGSFSVMVNYHAIGVYFASRGGFALHSPQEEASLKVSAFVLPANAVGEHETVSSAMTELYGDGLDRTCAKRSLQFPHLTTAFEDDIVCFGPNDFFVMQKSTKE 497          
BLAST of mRNA_H-elongata_contig48740.12040.1 vs. uniprot
Match: A0A3R7J6B8_9STRA (Type II protein arginine methyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J6B8_9STRA)

HSP 1 Score: 250 bits (639), Expect = 6.960e-76
Identity = 128/228 (56.14%), Postives = 156/228 (68.42%), Query Frame = 1
Query:    1 LQVDHQGRPREGLISVGSTQGQEPDPLDPDIIQRLDNRFRYRDIPEDYYADEGDNGPHFKRILEWYVDYAGKGVGGMSFLFPVGALRALRRLMTFSNNRGVVISGDKGNNNPEQFRGLVDPHIAVHGSFSVMVNYHAIGAYFTSRGGFALHNPQEEASLKVSTFVLTGETGQ------ALQGDFKGDAIDRKDCERSQRFPHLRAAFRTNVQQFGPNDFFVLQRSIRE 666
             QVD  G  +EGL+SVGS + +EPDPLDP+II+RL+N F+Y  I E YY   G++ PH   IL+WY +Y      G + L P+GAL AL RL   SN   VV+SGDKGNNNP+ FRG+ DPHIAVHGSFSVMVNYHAIG YF SRGGFALH+PQEEASLKVS FVL            +   +  GD +DR   +RS ++PHL  AF   +  FGPNDFFV+Q+S +E
Sbjct:  209 FQVDD-GVLKEGLVSVGSKRVEEPDPLDPEIIKRLNNIFKYEQIDETYY---GESRPHCNNILKWYHEYFDPASSGATILVPIGALTALERLSALSNRGLVVLSGDKGNNNPDHFRGVTDPHIAVHGSFSVMVNYHAIGVYFASRGGFALHSPQEEASLKVSAFVLPANVASESLAASSTMLELYGDGLDRVCEKRSHQYPHLSTAFEDEIASFGPNDFFVMQKSTKE 432          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48740.12040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPV2_ECTSI1.500e-11978.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2D5C4_9STRA6.570e-9365.07Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9YDE7_9STRA2.370e-8661.78Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U3RM50_9STRA6.560e-8663.27Type II protein arginine methyltransferase n=1 Tax... [more]
A0A835Z6J8_9STRA2.400e-8561.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D744_9STRA6.200e-7952.61Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TM08_9STRA1.290e-7853.07Tetratricopeptide repeat family protein n=5 Tax=Na... [more]
F0YMM3_AURAN4.510e-7753.20Type II protein arginine methyltransferase n=1 Tax... [more]
G4Z4F3_PHYSP2.820e-7656.58Type II protein arginine methyltransferase n=4 Tax... [more]
A0A3R7J6B8_9STRA6.960e-7656.14Type II protein arginine methyltransferase n=3 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48740contigH-elongata_contig48740:280..3345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.1
Seed ortholog evalue6.1e-99
Seed eggNOG ortholog2880.D7FPV2
EggNOG OGs28JR9@1,2QS4P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size690
Cds size690
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48740.12040.1prot_H-elongata_contig48740.12040.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48740 280..3345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930802.6066198-CDS-H-elongata_contig48740:279..4421622930802.6066198-CDS-H-elongata_contig48740:279..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48740 280..442 -
1691679576.5997236-CDS-H-elongata_contig48740:279..4421691679576.5997236-CDS-H-elongata_contig48740:279..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48740 280..442 -
1622930802.6196997-CDS-H-elongata_contig48740:1122..11811622930802.6196997-CDS-H-elongata_contig48740:1122..1181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48740 1123..1181 -
1691679576.609883-CDS-H-elongata_contig48740:1122..11811691679576.609883-CDS-H-elongata_contig48740:1122..1181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48740 1123..1181 -
1622930802.633263-CDS-H-elongata_contig48740:1771..19431622930802.633263-CDS-H-elongata_contig48740:1771..1943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48740 1772..1943 -
1691679576.619531-CDS-H-elongata_contig48740:1771..19431691679576.619531-CDS-H-elongata_contig48740:1771..1943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48740 1772..1943 -
1622930802.6495075-CDS-H-elongata_contig48740:2484..26121622930802.6495075-CDS-H-elongata_contig48740:2484..2612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48740 2485..2612 -
1691679576.6295047-CDS-H-elongata_contig48740:2484..26121691679576.6295047-CDS-H-elongata_contig48740:2484..2612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48740 2485..2612 -
1622930802.667341-CDS-H-elongata_contig48740:3177..33451622930802.667341-CDS-H-elongata_contig48740:3177..3345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48740 3178..3345 -
1691679576.6395197-CDS-H-elongata_contig48740:3177..33451691679576.6395197-CDS-H-elongata_contig48740:3177..3345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48740 3178..3345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48740.12040.1

>prot_H-elongata_contig48740.12040.1 ID=prot_H-elongata_contig48740.12040.1|Name=mRNA_H-elongata_contig48740.12040.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
LQVDHQGRPREGLISVGSTQGQEPDPLDPDIIQRLDNRFRYRDIPEDYYA
DEGDNGPHFKRILEWYVDYAGKGVGGMSFLFPVGALRALRRLMTFSNNRG
VVISGDKGNNNPEQFRGLVDPHIAVHGSFSVMVNYHAIGAYFTSRGGFAL
HNPQEEASLKVSTFVLTGETGQALQGDFKGDAIDRKDCERSQRFPHLRAA
FRTNVQQFGPNDFFVLQRSIREVRDCQTV*
back to top

mRNA from alignment at H-elongata_contig48740:280..3345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48740.12040.1 ID=mRNA_H-elongata_contig48740.12040.1|Name=mRNA_H-elongata_contig48740.12040.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3066bp|location=Sequence derived from alignment at H-elongata_contig48740:280..3345- (Himanthalia elongata Himel1 dioecious)
CTGCAGGTGGATCATCAGGGCAGGCCGAGGGAGGGCCTTATCAGCGTAGG GTCAACACAAGGCCAGGAACCCGACCCCTTGGACCCGGACATAATACAGC GACTGGACAACAGGTTTCGCTACAGGGACATCCCCGAGGACTATTATGCA GATGAAGGCGACAACGGGGTGGGTGGGTGGGCGGGCGTTGTCGTCTCCCT GCTGCAGTGGTGACGTCACTTGGCCGCTTTTGAATGGATGGGTCTGTTTA GTGTAGCCTCTAATCATTGGAAGTGGTTGTTTACTTGCCTCCATTGAAAT ACCATTACGGCACTTACTTGTGTCCCCCCACGGTCCTCTCCGTCCTCTCC CCTGTCTTCGCTGTATTCACAGTTTTTTTCACAGTATTATTAACTGTATC CGTGTAACCGGTTGTTGTAATTGGGTTTGCTATTGATATTGCTGGCCGTA TGTTTCCCACTTCAGTCCACTCGAGGATCGTTTTCCTCGTTTCATACTGC AAAGAAGTGTTTTATGGATTTGTTTCTCGGGGTTTTTTTTGTGTGTGTGC TTTTCGACCAATCTTACCTTACCTTACCTTACCTTATCTTACCTTACCTT ATCTTATCTTACCTTACCTTATCTTATCTTACCTTACCTTACCTTATCTT ATCTTATCTTACCTTATCTTACCTTACCTTACCTTACCTTATCTTATCTT TTACCCTACCCCGACCGAGACTGTCGACTTCAGCCCCATTTCAAGAGAAT ATTGGAGTGGTATGTGGACTACGCAGGGAAAGGTGTGGGAGGTATGTCCT TCCTGTTTCCTGTCGGGGCGTTGAGGGCGTTGAGGCGATTGATGACCTTC AGCAACAACAGGTGCACCGCGTGTTTTTTTTGTGACTATAATATACCATT GTATTATTAATAATAGTAACTAATATACCCTTGTATTATTCATAATAGTA ACTAATTTACCATTGTATTATTAATAATAGTAACTAATATACCCTTTCAC GTTGTGTACCTTGTGTATACAATATTTGTTGCGGTTACTTTTTGCGTTGA TATTTTTTGCTCTCTCAAAGTCTTGTGTGCCAACTGTAACTGTACGGTTG TTGGATGGAGGGCAAGACGCCGCAAGCTAACATACAAACCCCTCAAAAGC CTGGCTGGGTATATTGATGTCCTATCAATAGTGGCACGTTGTTTAGGTAC ATTATTATATAGGGTTTATTGTGATAGATTGTATTAATTGATATTTGCGC CGCGGCATAGAGAAAGAGAGAGAGAAATAAAAAGAGAAAAAACACGTTCT TAAACGTGTTGATATTTCCTTACGACCGACGCCCGTAATGTACCTTGGAT TACATACCTTTTGTATATTTATATACCTTTTGTATACATGTATTCCCCTC AGAGGTGTGGTGATCTCGGGAGACAAGGGGAACAACAACCCGGAGCAGTT CCGAGGGCTGGTGGACCCCCACATCGCGGTACACGGTTCCTTCTCCGTAA TGGTGAACTACCATGCCATCGGCGCCTACTTCACCAGTCGAGGCGGTTTC GCGTTACACAATCCGCAGGAAGAGGTAGGTGCCTAGACATATTGTAGGTA TAGACATATTGTAGGTATACATTATAGACCTACATTGTGGACATTGTTAG ACAACCTGGGTCCATGGTATTGTAGATAGGCGTCCGTTCAGTTTTCACTA TCGCCGCCCCAAACGATTACTACTATTAATAGTACTAATACTAATACTAG TATAGTAGTTATAGTACCAGATAGAGAGTCCTAGAGCATTATGTTCCTGT CCTTTATTTTCAAATAAAATAATTTGGATATTGGCCATACTGACGCGGAT CGGATAGGATCGGATCTTTTTCCGCGAACCACTCGAAACTGTCTTAAACG ATCTTCCTACGATGCTGCGGTGTACGTAATCGTACTTGTGCGTGTCCTTC CGACAAAGCTATAATAGCTTCATGCCTTGACCGATTCGATTGATTTTCGC CCTTCATTTCTTGTACGATATGTCTTTATATATATATATATATATATATA TCCCTTTATCCTATATCTTTATATATTTTCTCTCTTTCTGGCCTGTGTGT TCACTTCACCTCACGTGTCGTGTCGCGTCGCGTTATGGTCTACCCCTCTC TCTTTGCCGTGCAGGCGAGCTTGAAGGTGTCAACTTTCGTCTTAACGGGG GAGACAGGTCAGGCCTTACAGGGGTATCACTCATGATGAGTTATTGACTG GTTGGCTTCTTATATCTTGAAGTGACTGATCGATCAATCGACTGACCTGA GTGGCTGATATATCGATACATCGAATGACGGATCTAATGGATTCAACGAT GGAGTATAGTATAGTATATTATAGTATAGCACTGATCTGTTTGGTTGGCC AACTAAAGCCATGTAATATGATTGGCAGGTCTCGAGCAGTGCGTTGTTAT AGGGCATTGGTGGAAGCTCTTGTGTGCGCTCTAAAAATGGGGGACCGACC AGCTCGATTTGGCCTAAAACACGACCGTTGTTTTGGTGAAGGGGGGCGGA TGAGAGAACACTTGTACCAGCGACGCCTCGGGGGCTTGTTGAGCAACGAT ATGACGGGGCTCGGGAGATTGTTGAAAGAGGTTTCAGGTCGTCTCATTGT CGCATCTTTTGTTTATTTAAATATGTTACTGCACTATACTGTACTGTCGA TGGTCCGTTCTACTTACATCGAGGAACCTTTTCTGTGTTGCGCGGGCGTG TTTTCGAGCTCTTTATGCTCGTGTGAAAGTGCCATATGTCTGTCTCTGTT TGGTTGTGTTTCCGATCAAAAATGCCCCCACCTCTCTCCCCCCGCGCCCC CACCCCTCTTCCTCCGTCGAACACGCCTCCGTACGCCACACAGGCCAAGA CAGAGATTTCAAGGGAGACGCGATCGATCGAAAGGACTGCGAACGTTCTC AGCGGTTTCCGCACCTGAGGGCCGCGTTTAGGACAAACGTCCAACAATTT GGGCCGAACGACTTCTTTGTGCTGCAGAGATCCATCAGGGAGGTGAGGGA CTGTCAAACTGTGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig48740:280..3345-

>mRNA_H-elongata_contig48740.12040.1 ID=mRNA_H-elongata_contig48740.12040.1|Name=mRNA_H-elongata_contig48740.12040.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig48740:280..3345- (Himanthalia elongata Himel1 dioecious)
CTGCAGGTGGATCATCAGGGCAGGCCGAGGGAGGGCCTTATCAGCGTAGG
GTCAACACAAGGCCAGGAACCCGACCCCTTGGACCCGGACATAATACAGC
GACTGGACAACAGGTTTCGCTACAGGGACATCCCCGAGGACTATTATGCA
GATGAAGGCGACAACGGGCTGCAGGTGGATCATCAGGGCAGGCCGAGGGA
GGGCCTTATCAGCGTAGGGTCAACACAAGGCCAGGAACCCGACCCCTTGG
ACCCGGACATAATACAGCGACTGGACAACAGGTTTCGCTACAGGGACATC
CCCGAGGACTATTATGCAGATGAAGGCGACAACGGGCCCCATTTCAAGAG
AATATTGGAGTGGTATGTGGACTACGCAGGGAAAGGTGTGGGAGGTATGT
CCTTCCTGTTTCCTGTCGGGGCGTTGAGGGCGTTGAGGCGATTGATGACC
TTCAGCAACAACAGCCCCATTTCAAGAGAATATTGGAGTGGTATGTGGAC
TACGCAGGGAAAGGTGTGGGAGGTATGTCCTTCCTGTTTCCTGTCGGGGC
GTTGAGGGCGTTGAGGCGATTGATGACCTTCAGCAACAACAGAGGTGTGG
TGATCTCGGGAGACAAGGGGAACAACAACCCGGAGCAGTTCCGAGGGCTG
GTGGACCCCCACATCGCGGTACACGGTTCCTTCTCCGTAATGGTGAACTA
CCATGCCATCGGCGCCTACTTCACCAGTCGAGGCGGTTTCGCGTTACACA
ATCCGCAGGAAGAGAGGTGTGGTGATCTCGGGAGACAAGGGGAACAACAA
CCCGGAGCAGTTCCGAGGGCTGGTGGACCCCCACATCGCGGTACACGGTT
CCTTCTCCGTAATGGTGAACTACCATGCCATCGGCGCCTACTTCACCAGT
CGAGGCGGTTTCGCGTTACACAATCCGCAGGAAGAGGCGAGCTTGAAGGT
GTCAACTTTCGTCTTAACGGGGGAGACAGGTCAGGCCTTACAGGGGCGAG
CTTGAAGGTGTCAACTTTCGTCTTAACGGGGGAGACAGGTCAGGCCTTAC
AGGGAGATTTCAAGGGAGACGCGATCGATCGAAAGGACTGCGAACGTTCT
CAGCGGTTTCCGCACCTGAGGGCCGCGTTTAGGACAAACGTCCAACAATT
TGGGCCGAACGACTTCTTTGTGCTGCAGAGATCCATCAGGGAGGTGAGGG
ACTGTCAAACTGTGTGAAGATTTCAAGGGAGACGCGATCGATCGAAAGGA
CTGCGAACGTTCTCAGCGGTTTCCGCACCTGAGGGCCGCGTTTAGGACAA
ACGTCCAACAATTTGGGCCGAACGACTTCTTTGTGCTGCAGAGATCCATC
AGGGAGGTGAGGGACTGTCAAACTGTGTGA
back to top