mRNA_H-elongata_contig115118.1204.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115118.1204.1
Unique NamemRNA_H-elongata_contig115118.1204.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig115118.1204.1 vs. uniprot
Match: D8LCL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL5_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 8.290e-15
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 GKRDMPLVFRLVGRGVGKVSGLIQGGRARMTELSQGGELLQVK 129
            GKRDMPLVFRL GRGVGKVSGL+QGGRARM ELSQG +LLQ++
Sbjct:   21 GKRDMPLVFRLAGRGVGKVSGLVQGGRARMNELSQGSDLLQLQ 63
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BLAST of mRNA_H-elongata_contig115118.1204.1 vs. uniprot
Match: A0A6H5K8Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Q4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.360e-14
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 GKRDMPLVFRLVGRGVGKVSGLIQGGRARMTELSQGGELLQVK 129
            GKRDMPLVFRL GRGVGKVSGL+QGGRARM ELSQG +LLQ++
Sbjct:   21 GKRDMPLVFRLAGRGVGKVSGLVQGGRARMNELSQGSDLLQLQ 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115118.1204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCL5_ECTSI8.290e-1583.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8Q4_9PHAE1.360e-1483.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115118contigH-elongata_contig115118:1951..2079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_002430.1
Exons1
Model size129
Cds size117
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.0809798-CDS-H-elongata_contig115118:1950..20671622929667.0809798-CDS-H-elongata_contig115118:1950..2067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115118 1951..2067 -
1691679112.042161-CDS-H-elongata_contig115118:1950..20671691679112.042161-CDS-H-elongata_contig115118:1950..2067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115118 1951..2067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.096546-UTR-H-elongata_contig115118:2067..20791622929667.096546-UTR-H-elongata_contig115118:2067..2079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115118 2068..2079 -
1691679112.0525937-UTR-H-elongata_contig115118:2067..20791691679112.0525937-UTR-H-elongata_contig115118:2067..2079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115118 2068..2079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115118.1204.1prot_H-elongata_contig115118.1204.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115118 1951..2067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115118.1204.1

>prot_H-elongata_contig115118.1204.1 ID=prot_H-elongata_contig115118.1204.1|Name=mRNA_H-elongata_contig115118.1204.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MPLVFRLVGRGVGKVSGLIQGGRARMTELSQGGELLQVK
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mRNA from alignment at H-elongata_contig115118:1951..2079-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115118.1204.1 ID=mRNA_H-elongata_contig115118.1204.1|Name=mRNA_H-elongata_contig115118.1204.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig115118:1951..2079- (Himanthalia elongata Himel1 dioecious)
GGGAAGCGAGACATGCCCCTGGTTTTCCGGCTAGTCGGGCGAGGCGTTGG
GAAGGTCTCCGGCCTTATCCAGGGCGGCCGGGCGAGGATGACCGAGCTAT
CCCAAGGGGGCGAGCTTCTGCAGGTGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig115118:1951..2079-

>mRNA_H-elongata_contig115118.1204.1 ID=mRNA_H-elongata_contig115118.1204.1|Name=mRNA_H-elongata_contig115118.1204.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig115118:1951..2079- (Himanthalia elongata Himel1 dioecious)
ATGCCCCTGGTTTTCCGGCTAGTCGGGCGAGGCGTTGGGAAGGTCTCCGG
CCTTATCCAGGGCGGCCGGGCGAGGATGACCGAGCTATCCCAAGGGGGCG
AGCTTCTGCAGGTGAAGATGCCCCTGGTTTTCCGGCTAGTCGGGCGAGGC
GTTGGGAAGGTCTCCGGCCTTATCCAGGGCGGCCGGGCGAGGATGACCGA
GCTATCCCAAGGGGGCGAGCTTCTGCAGGTGAAG
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