mRNA_H-elongata_contig48702.12032.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48702.12032.1
Unique NamemRNA_H-elongata_contig48702.12032.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48702.12032.1 vs. uniprot
Match: D7G581_ECTSI (Chlorophyll synthase, putative chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G581_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 1.380e-114
Identity = 166/195 (85.13%), Postives = 174/195 (89.23%), Query Frame = 3
Query:  423 EVIEQIWVLLIGGLCVGYGLDVWAGHDFPSIFALSVFGCLISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNLQASRATAITANVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASIDATQLGIAAWLYYIGEPTYAAILTALVLPQILAQFKYFLPDPVENDVK 1007
            +VIEQIW LL+GGL + YGLDVWAGHDFP +FALSV G  ISYIYSAPP+KLKQNGWLGNYALGSSYISLPWWCGQAMFGELN+Q          VVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVE AKW+CV SIDATQLGIAAWLYYIGEPTYAAILTALVLPQ+ AQFKYFLPDPV NDVK
Sbjct:  208 QVIEQIWFLLLGGLAIAYGLDVWAGHDFPMVFALSVGGSFISYIYSAPPIKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNIQ----------VVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVEKAKWLCVGSIDATQLGIAAWLYYIGEPTYAAILTALVLPQVFAQFKYFLPDPVGNDVK 392          
BLAST of mRNA_H-elongata_contig48702.12032.1 vs. uniprot
Match: A0A835YRI7_9STRA (Chlorophyll synthase, putative chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRI7_9STRA)

HSP 1 Score: 331 bits (848), Expect = 2.390e-108
Identity = 161/195 (82.56%), Postives = 170/195 (87.18%), Query Frame = 3
Query:  423 EVIEQIWVLLIGGLCVGYGLDVWAGHDFPSIFALSVFGCLISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNLQASRATAITANVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASIDATQLGIAAWLYYIGEPTYAAILTALVLPQILAQFKYFLPDPVENDVK 1007
            +V  QI  LL GGL + YGLD+WAGHD P+I  LS+FG  ISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELN+Q          VV+LTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASID TQLGIAAWLY +GEPTYAA+LTALVLPQI AQFKYFLPDPVENDVK
Sbjct:  199 QVKAQIAFLLGGGLALAYGLDLWAGHDTPTILLLSIFGSFISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNIQ----------VVVLTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASIDLTQLGIAAWLYSVGEPTYAAVLTALVLPQIYAQFKYFLPDPVENDVK 383          
BLAST of mRNA_H-elongata_contig48702.12032.1 vs. uniprot
Match: D7P7W3_ELYCH (Chlorophyll synthase subunit G (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D7P7W3_ELYCH)

HSP 1 Score: 322 bits (824), Expect = 9.080e-107
Identity = 153/195 (78.46%), Postives = 166/195 (85.13%), Query Frame = 3
Query:  423 EVIEQIWVLLIGGLCVGYGLDVWAGHDFPSIFALSVFGCLISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNLQASRATAITANVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASIDATQLGIAAWLYYIGEPTYAAILTALVLPQILAQFKYFLPDPVENDVK 1007
            +V  QI  LL+GGL + YGLD+WAGH  P++F LS+FG  ISYIYSAPPLKLKQNGW GN+ALGSSYISLPWWCGQAMFGELNLQ          VV+LTLLYSWAGLGIAIVNDFKSVEGDR MGLQSLPVAFG+E AKWICV+SID TQLGIAAWLYYIGEPTYA +L  L+LPQI AQFKYFLPDPVENDVK
Sbjct:   69 QVKAQIAFLLVGGLALSYGLDLWAGHQMPTVFLLSLFGTFISYIYSAPPLKLKQNGWAGNFALGSSYISLPWWCGQAMFGELNLQ----------VVVLTLLYSWAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGIEKAKWICVSSIDITQLGIAAWLYYIGEPTYAFVLLGLILPQIYAQFKYFLPDPVENDVK 253          
BLAST of mRNA_H-elongata_contig48702.12032.1 vs. uniprot
Match: A0A1Y1IHS9_KLENI (Chlorophyll synthase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHS9_KLENI)

HSP 1 Score: 294 bits (753), Expect = 7.440e-94
Identity = 140/195 (71.79%), Postives = 161/195 (82.56%), Query Frame = 3
Query:  423 EVIEQIWVLLIGGLCVGYGLDVWAGHDFPSIFALSVFGCLISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNLQASRATAITANVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASIDATQLGIAAWLYYIGEPTYAAILTALVLPQILAQFKYFLPDPVENDVK 1007
            +VI QIWVLL+GGL V YGLDVWAGH+FP + ALS  G  +SYIYSAPPLKLKQ+GW+GNYALGSSYISLPWW GQA+FG           IT +VV+LTLLYS AGLGIAIVNDFKS+EGDR MGL SLPVAFGV+TAKWICVASIDATQL +AA+L   G+ TYAA+L  L+LPQI  Q+KYF+PDP++NDVK
Sbjct:  214 DVIAQIWVLLLGGLAVAYGLDVWAGHEFPIVLALSAGGSFLSYIYSAPPLKLKQSGWIGNYALGSSYISLPWWAGQAVFGS----------ITPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRAMGLNSLPVAFGVDTAKWICVASIDATQLSVAAYLAATGQTTYAAVLLGLILPQIFFQYKYFIPDPIKNDVK 398          
BLAST of mRNA_H-elongata_contig48702.12032.1 vs. uniprot
Match: A0A7S1XSB6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSB6_9STRA)

HSP 1 Score: 290 bits (742), Expect = 4.280e-92
Identity = 143/195 (73.33%), Postives = 159/195 (81.54%), Query Frame = 3
Query:  423 EVIEQIWVLLIGGLCVGYGLDVWAGHDFPSIFALSVFGCLISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNLQASRATAITANVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASIDATQLGIAAWLYYIGEPTYAAILTALVLPQILAQFKYFLPDPVENDVK 1007
            EVI QIW LL+GGL +   LD+WAGH+ P++F LS+FG  ISYIYSAPPLKLKQNGW+GNYALGSSYISLPWWCGQAMFGELN Q          V ILTLLYSWAGLGIAIVNDFKSVEGDR MGLQSLPVAFGV+ AKWICVASIDATQ  +AA+L Y G+  YAA LTAL+LPQ+  Q K+FL DPVE DV+
Sbjct:  218 EVIFQIWFLLLGGLGLAGALDLWAGHETPTVFLLSLFGSFISYIYSAPPLKLKQNGWIGNYALGSSYISLPWWCGQAMFGELNWQ----------VCILTLLYSWAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGVDKAKWICVASIDATQAAVAAYLAYNGQYGYAAALTALILPQMYFQQKFFLKDPVEYDVQ 402          
BLAST of mRNA_H-elongata_contig48702.12032.1 vs. uniprot
Match: A0A2P6TI09_CHLSO (Chlorophyll synthetase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TI09_CHLSO)

HSP 1 Score: 287 bits (735), Expect = 1.640e-91
Identity = 141/196 (71.94%), Postives = 161/196 (82.14%), Query Frame = 3
Query:  423 EVIEQIWVLLIGGLCVGYGLDVWAGHDFPSIFALSVFGCLISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNLQASRATAITANVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASIDATQLGIAAWLYY-IGEPTYAAILTALVLPQILAQFKYFLPDPVENDVK 1007
            EVI QIW+LL+GG+ V   LD+WAGHDFP +  L+VFG  ISYIYSAPPLKLKQ+GW GNYALGSSYI+LPWW GQA+FG L L          +V++LT+LYS AGLGIAIVNDFKS+EGDR MGLQSLPVAFGVETAKWICVASIDATQLG+AA+L + + EP YAA+L  L+LPQI AQ KYFLPDPV NDVK
Sbjct:  165 EVIAQIWILLLGGIGVAAVLDLWAGHDFPIMTLLAVFGSFISYIYSAPPLKLKQSGWAGNYALGSSYIALPWWAGQALFGTLTL----------DVMVLTVLYSIAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGVETAKWICVASIDATQLGVAAYLAFGLDEPIYAAVLLGLILPQIYAQVKYFLPDPVANDVK 350          
BLAST of mRNA_H-elongata_contig48702.12032.1 vs. uniprot
Match: A0A6V1M160_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M160_HETAK)

HSP 1 Score: 284 bits (726), Expect = 4.060e-90
Identity = 135/195 (69.23%), Postives = 158/195 (81.03%), Query Frame = 3
Query:  423 EVIEQIWVLLIGGLCVGYGLDVWAGHDFPSIFALSVFGCLISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNLQASRATAITANVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASIDATQLGIAAWLYYIGEPTYAAILTALVLPQILAQFKYFLPDPVENDVK 1007
            EVI QIW LL+GGL + YG+DVW GHD P++F LSVFG  ISYIYSAPPLKLKQ+ W+GNYALG+SYI+LPWWCGQA FGEL          T +VV+LT+LYS AGLGIAIVNDFKS+EGDR +GLQSLPVAFGVE AKWICV++ID TQL +AA+LY+ G+PTY  +L  LVLPQI  Q KY +PDP+ NDVK
Sbjct:  190 EVIGQIWFLLLGGLGLAYGIDVWVGHDVPTVFLLSVFGSFISYIYSAPPLKLKQS-WVGNYALGASYIALPWWCGQAAFGEL----------TWDVVVLTVLYSLAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVEKAKWICVSTIDVTQLAVAAYLYWSGQPTYGLVLLGLVLPQIALQAKYLIPDPINNDVK 373          
BLAST of mRNA_H-elongata_contig48702.12032.1 vs. uniprot
Match: A0A2P6VPN9_9CHLO (Chlorophyll synthetase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VPN9_9CHLO)

HSP 1 Score: 283 bits (725), Expect = 5.750e-90
Identity = 138/196 (70.41%), Postives = 158/196 (80.61%), Query Frame = 3
Query:  423 EVIEQIWVLLIGGLCVGYGLDVWAGHDFPSIFALSVFGCLISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNLQASRATAITANVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASIDATQLGIAAWLYY-IGEPTYAAILTALVLPQILAQFKYFLPDPVENDVK 1007
            EV  QIW LL+GG+ V Y LD WAGHDFP + AL+  G  ISYIYSAPPLKLKQ+GW GNYALGSSYI+LPWW GQA+FG L L          +V +LT+LYS AGLGIAIVNDFKS+EGDR MGLQSLPVAFGV+TAKWICVASIDATQLG+AA+L + + EP + A+L AL+LPQI AQ+KYFLPDPV NDVK
Sbjct:  166 EVKAQIWALLLGGIGVAYALDTWAGHDFPIMTALAAGGSFISYIYSAPPLKLKQSGWAGNYALGSSYIALPWWAGQALFGTLTL----------DVCVLTILYSIAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGVDTAKWICVASIDATQLGVAAYLAFGLNEPIFGAVLLALILPQIYAQYKYFLPDPVANDVK 351          
BLAST of mRNA_H-elongata_contig48702.12032.1 vs. uniprot
Match: A0A7S1ZAA9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZAA9_TRICV)

HSP 1 Score: 281 bits (720), Expect = 1.110e-89
Identity = 135/195 (69.23%), Postives = 155/195 (79.49%), Query Frame = 3
Query:  423 EVIEQIWVLLIGGLCVGYGLDVWAGHDFPSIFALSVFGCLISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNLQASRATAITANVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASIDATQLGIAAWLYYIGEPTYAAILTALVLPQILAQFKYFLPDPVENDVK 1007
            EVI QIW+LL+GGL + YGLDVWAGH+FP++ ALSVFG  ISYIYSAPPLKLKQNGW GN+ALG+SYISLPWWCGQA+FGEL+              IL +LYS AGLGIAIVNDFKS+EGDR +GL SLPVAFG++ AK+IC  S+  TQLG+A +LY I EPTYAAIL AL+LPQI  Q    LPDPVENDVK
Sbjct:  149 EVIAQIWILLLGGLGIAYGLDVWAGHEFPTVLALSVFGSFISYIYSAPPLKLKQNGWAGNFALGASYISLPWWCGQAVFGELDKPVYW---------ILPILYSIAGLGIAIVNDFKSIEGDRALGLNSLPVAFGIDGAKYICAGSVTLTQLGVAGYLYSINEPTYAAILLALILPQIYFQATLLLPDPVENDVK 334          
BLAST of mRNA_H-elongata_contig48702.12032.1 vs. uniprot
Match: Q7XYK8_BIGNA (Chlorophyll synthetase n=1 Tax=Bigelowiella natans TaxID=227086 RepID=Q7XYK8_BIGNA)

HSP 1 Score: 285 bits (730), Expect = 1.970e-89
Identity = 136/194 (70.10%), Postives = 157/194 (80.93%), Query Frame = 3
Query:  423 EVIEQIWVLLIGGLCVGYGLDVWAGHDFPSIFALSVFGCLISYIYSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNLQASRATAITANVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICVASIDATQLGIAAWLYYIGEPTYAAILTALVLPQILAQFKYFLPDPVENDV 1004
            EVI QIW LL+GGL + YGLD WAGHDFP + ALS+ G  +SYIYSAPPLKLKQ+GW GNYALGSSYI+LPWWCGQAMFG LN          A V++L+LLYS AGLGIAIVNDFKS+EGDR++GLQSLPVAFGV+TAKW+C  SID TQLG+AA+LY IGE TYA IL AL+LPQ+  Q KY L DP++ DV
Sbjct:  289 EVIAQIWALLLGGLGLAYGLDQWAGHDFPMVTALSIGGSFVSYIYSAPPLKLKQSGWAGNYALGSSYIALPWWCGQAMFGTLN----------APVIVLSLLYSIAGLGIAIVNDFKSIEGDRKLGLQSLPVAFGVDTAKWLCAGSIDVTQLGVAAYLYSIGETTYANILIALILPQMFFQNKYLLKDPIKYDV 472          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48702.12032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G581_ECTSI1.380e-11485.13Chlorophyll synthase, putative chloroplast n=1 Tax... [more]
A0A835YRI7_9STRA2.390e-10882.56Chlorophyll synthase, putative chloroplast n=1 Tax... [more]
D7P7W3_ELYCH9.080e-10778.46Chlorophyll synthase subunit G (Fragment) n=4 Tax=... [more]
A0A1Y1IHS9_KLENI7.440e-9471.79Chlorophyll synthase n=1 Tax=Klebsormidium nitens ... [more]
A0A7S1XSB6_9STRA4.280e-9273.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2P6TI09_CHLSO1.640e-9171.94Chlorophyll synthetase n=1 Tax=Chlorella sorokinia... [more]
A0A6V1M160_HETAK4.060e-9069.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2P6VPN9_9CHLO5.750e-9070.41Chlorophyll synthetase n=1 Tax=Micractinium conduc... [more]
A0A7S1ZAA9_TRICV1.110e-8969.23Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
Q7XYK8_BIGNA1.970e-8970.10Chlorophyll synthetase n=1 Tax=Bigelowiella natans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48702contigH-elongata_contig48702:383..3615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.1
Seed ortholog evalue2.2e-92
Seed eggNOG ortholog2880.D7G581
Preferred nameCHLG
KEGG rclassRC00020
KEGG koko:K04040
KEGG ReactionR06284,R09067,R11514,R11517
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009536,GO:0009579,GO:0031976,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.chlorophyll synthetase activity
EggNOG OGs2QQMP@2759,COG0382@1
EC2.5.1.133,2.5.1.62
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionChlorophyll synthase, putative chloroplast precursor
Ec32 orthologEc-14_006550.1
Exons6
Model size1010
Cds size606
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.8871121-CDS-H-elongata_contig48702:382..6851622930801.8871121-CDS-H-elongata_contig48702:382..685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48702 383..685 -
1691679576.2702672-CDS-H-elongata_contig48702:382..6851691679576.2702672-CDS-H-elongata_contig48702:382..685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48702 383..685 -
1622930801.9022894-CDS-H-elongata_contig48702:1082..13661622930801.9022894-CDS-H-elongata_contig48702:1082..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48702 1083..1366 -
1691679576.286618-CDS-H-elongata_contig48702:1082..13661691679576.286618-CDS-H-elongata_contig48702:1082..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48702 1083..1366 -
1622930801.915988-CDS-H-elongata_contig48702:1702..17211622930801.915988-CDS-H-elongata_contig48702:1702..1721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48702 1703..1721 -
1691679576.2959719-CDS-H-elongata_contig48702:1702..17211691679576.2959719-CDS-H-elongata_contig48702:1702..1721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48702 1703..1721 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.9300292-UTR-H-elongata_contig48702:1721..18131622930801.9300292-UTR-H-elongata_contig48702:1721..1813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48702 1722..1813 -
1691679576.3049622-UTR-H-elongata_contig48702:1721..18131691679576.3049622-UTR-H-elongata_contig48702:1721..1813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48702 1722..1813 -
1622930801.9459488-UTR-H-elongata_contig48702:2097..22191622930801.9459488-UTR-H-elongata_contig48702:2097..2219Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48702 2098..2219 -
1691679576.321457-UTR-H-elongata_contig48702:2097..22191691679576.321457-UTR-H-elongata_contig48702:2097..2219Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48702 2098..2219 -
1622930801.9669938-UTR-H-elongata_contig48702:3082..31871622930801.9669938-UTR-H-elongata_contig48702:3082..3187Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48702 3083..3187 -
1691679576.3339527-UTR-H-elongata_contig48702:3082..31871691679576.3339527-UTR-H-elongata_contig48702:3082..3187Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48702 3083..3187 -
1622930801.9868953-UTR-H-elongata_contig48702:3530..36151622930801.9868953-UTR-H-elongata_contig48702:3530..3615Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48702 3531..3615 -
1691679576.3456511-UTR-H-elongata_contig48702:3530..36151691679576.3456511-UTR-H-elongata_contig48702:3530..3615Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48702 3531..3615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48702.12032.1prot_H-elongata_contig48702.12032.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48702 383..1721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48702.12032.1

>prot_H-elongata_contig48702.12032.1 ID=prot_H-elongata_contig48702.12032.1|Name=mRNA_H-elongata_contig48702.12032.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
MSPFRFEVIEQIWVLLIGGLCVGYGLDVWAGHDFPSIFALSVFGCLISYI
YSAPPLKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNLQASRATAITA
NVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVETAKWICV
ASIDATQLGIAAWLYYIGEPTYAAILTALVLPQILAQFKYFLPDPVENDV
K*
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mRNA from alignment at H-elongata_contig48702:383..3615-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48702.12032.1 ID=mRNA_H-elongata_contig48702.12032.1|Name=mRNA_H-elongata_contig48702.12032.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3233bp|location=Sequence derived from alignment at H-elongata_contig48702:383..3615- (Himanthalia elongata Himel1 dioecious)
CTGACAGCGTCGAAGAAATCACAAAGAGGCACTGCGGAGGGCGAGGGCGC GGGAGGAGCTTTCCGCCAGCTCGTTGGGCTCAAGGGTGCGTGGGATATAA GGGCGTCGGTTGCTCGCATAGGGTTTCTGGGAACACAGGAGAACGCTAGC TCCCTCCTACTAAAGGTTTGTCTTGAGGTTGCACGACAAGGACCCCACGA CGGTGTTGTAGAGGGCATGCTACTGCGCACTACCCGATTTCGGTCAGATT CGTCTCGTTGTCGCATTCGGCGTTATGTGCTCGGCTTTGTTTCATGTTAA ACTACTACTTGTTTCACGTTAAACTACGAATAATGGGCCCGGGCGCAATC ATCACAACTAGACATGTTGCGGCCATGCCCCATTTGTTTTTTTTCCCTCT CTTACTTCGAATGAACGACACGATCCAGGAGCCTCCACGACCGATGACAT ATTGAAGATCCGCATTCAGCTGACCAAGCCCGTGACATGGATCCCTCTCA TCTGGGGCGTTGCCTGTGGTGCAGCTGCATCAGGTGCATATCAATTATAT TTGGAGCTGTCCCCTCTGACTGCACCGCCAGCAATTATGTGGACACAGCG ATCATATCGTCCCCGGGCTCGTGTTCGCGTCTGGCATGGTAAATTAATAT ATAACATGTACTGTGGAGAAGCCGGGAGATTTAAAAAATGAACACCCCGA TACCATAAATGACTAAACACAGAACACTACGAACCTGGCAAGAAGTCCTC GCCTACACCTGTTAAGAGGTTGTACATTTGAACATAACGTAAGGCCACCG CAAAGTTATCTCGGAGGCGACCCATCCACAATAATTGGTAAAGAATAATT GTCCCCCGAGTAGCCTAATGGGTAACCACATAAACTTACTTTAATAGTTC GGAAATAGTGAGTTCGAATTCCGCCAGGATCATTTCTTTTATATTTCTGT AGCGATCATAGTCTAAAACGTGAGAACGGGAGAAAGCAAAGTTCGACCAT TGGTTGATCACACACACACATGAGCGCTGAACTTGCATCGCGATAAAAAA TCGTAGGGAGGCGTGAACCAGCCGGGGAAAGGGGAGCGATCGGTTGATCC TCTAGGACCACAGGTAATGATGAGATGGAAGCGTCGCGACAAGCGGAATT AGAAGCATTGAATTTTATAACCCATCCGCCAAAAGTGATATTATATGTAT ATATATATATATATATATATATATGCATCTACCGGTATAGGGCAAGGCGT ATGGGAGCGAACAGTGGGTGGCATCAGGCGGCATAATCACTTCCTATGCT AACATGCTAAATCAATCCCGATGCCTACTCGAAGTGGCACCGACCCGTCA TCACCGATCTTGACACGTTAACGATCGAGCATTCCTCCGTTTGCAGGTAA TTACCACTGGTGGAACCCTTTCGGAGGGGACGTGAGCCTCGAACTTGGTT CGCAGGACCTGCTCAAGGCGCTCGGCTGCATGGTGCTGGCGGGACCGTTC CTCACTGGATTCACGCAGGTTATCTTCCTTCCCTTCCTCGTACCGCCTCA TTAGATGCGCGACAGAAACCTCTTGGGGGCCCTTTTTTGCCCACTGTTAT CTGTACGTTGGCTGTTTTTTTCTCTACCAGCCGTGACGAGGAGTGACTTA TCAGCGGCCGTGTCCTTCTCCAAAATCGGTGTGCGTGCTTTTCAAGACGT CTGTATCGACTGCCGACTTGAAATCGATTCAGCTCTGGAGCATGGTCTTA GCCGGTAACGAAAAAAATGCCCGCCCTCTTCTCTTTTTTCTGTATAATAT AGACAATAAACGACTGGTACGACAGGGAGATCGATGCCATCAACGAGCCC TACAGACCTATTCCTTCGGGCGCCATCTCTGAGGCGAGCAAACGATGAGC CCCTTCCGCTTCGGTCTACGATAACAGGCGTTTTCGCGTTATGTATGCGA TTGGCGGGATGTCGAAGGTTGTGATCCGCATTGTTGAACCTCGACCCGGA ACTCCGGTCGGTCAAATGTTTCGGTCCTGCCGGCGGAGTCATCAACTCAA TCGCAGGGACACGACAACCATTGATTGATCCCCGCCTCGAACGAAGGAAA TTCGCCGCGGCTAAAGGCAGGGGTAGTTAGTTATAGGACGCAAGATACCG GACGCAAAATATATGAATGTCCCTCTACACCTCCGTTCTTGCCATATAAA TTACACTATACATTCCATATGTATTCACTTATTTCCGAAACACAGAAAGA GGTGATCGAGCAGATCTGGGTTTTGCTCATTGGAGGCCTCTGCGTGGGAT ATGGGCTGGACGTATGGGCCGGGCACGACTTCCCGTCGATATTTGCGCTC TCCGTATTTGGGTGCCTGATCTCGTACATCTACTCGGCGCCTCCGCTGAA GCTTAAGCAGAACGGTTGGCTAGGGAACTACGCATTAGGGTCTTCCTACA TTTCTCTCCCGTGGTGGTGCGGACAGGCCATGTTCGGGGAGCTCAACCTT CAGGCGAGCCGCGCAACAGCGATAACAGCGAATGTCTTGTGGTGGATGTT TGCGCGAGGTGTCGTATGCCCTCGGGTACCATGGGAGGTGTGGGTGTTGC AGAGCTGTTGGCGTATCCTCCCGGGGGAGATGCAAGCCGCGCCGACACCC CTGTTCCAAGAATTGCAAGCGGTTCGTATTCGCAAAACATATGCGTCCGC GCTCGCCGTTTCACGGAAATTCCCCTTTCGTCTTCTGTAGCCTTCTTTAA GCCGTCTTCTCTAGCCTTCTTTCGCCGGAAATATTTCTCTTGCAGCTTTC TCTTGCGTGTTGCCGGACTGCCCCGAACTGCTCTCCAAAACGAAGTCGGT TCACAAGCAGCGACCCCGCACCCAATCTCCTTACCGATCGCTCTCATCAC GATGGGCGCGTCTTGGCCCCTCGCCTCCAGGTGGTGATCCTCACCCTACT ATACTCGTGGGCGGGGCTAGGCATTGCGATCGTCAACGACTTCAAGAGCG TGGAGGGCGACAGGGAAATGGGTCTGCAGTCCTTGCCGGTAGCGTTCGGG GTGGAGACGGCGAAGTGGATATGCGTTGCCTCGATCGATGCTACGCAGCT GGGCATCGCTGCGTGGCTATATTACATCGGGGAGCCCACATACGCGGCTA TTCTGACCGCGCTGGTCCTGCCACAGATTTTGGCGCAGTTCAAGTACTTT CTTCCAGATCCCGTCGAGAATGACGTCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig48702:383..3615-

>mRNA_H-elongata_contig48702.12032.1 ID=mRNA_H-elongata_contig48702.12032.1|Name=mRNA_H-elongata_contig48702.12032.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig48702:383..3615- (Himanthalia elongata Himel1 dioecious)
ATGAGCCCCTTCCGCTTCGATGAGCCCCTTCCGCTTCGAGGTGATCGAGC
AGATCTGGGTTTTGCTCATTGGAGGCCTCTGCGTGGGATATGGGCTGGAC
GTATGGGCCGGGCACGACTTCCCGTCGATATTTGCGCTCTCCGTATTTGG
GTGCCTGATCTCGTACATCTACTCGGCGCCTCCGCTGAAGCTTAAGCAGA
ACGGTTGGCTAGGGAACTACGCATTAGGGTCTTCCTACATTTCTCTCCCG
TGGTGGTGCGGACAGGCCATGTTCGGGGAGCTCAACCTTCAGGCGAGCCG
CGCAACAGCGATAACAGCGAATAGGTGATCGAGCAGATCTGGGTTTTGCT
CATTGGAGGCCTCTGCGTGGGATATGGGCTGGACGTATGGGCCGGGCACG
ACTTCCCGTCGATATTTGCGCTCTCCGTATTTGGGTGCCTGATCTCGTAC
ATCTACTCGGCGCCTCCGCTGAAGCTTAAGCAGAACGGTTGGCTAGGGAA
CTACGCATTAGGGTCTTCCTACATTTCTCTCCCGTGGTGGTGCGGACAGG
CCATGTTCGGGGAGCTCAACCTTCAGGCGAGCCGCGCAACAGCGATAACA
GCGAATGTGGTGATCCTCACCCTACTATACTCGTGGGCGGGGCTAGGCAT
TGCGATCGTCAACGACTTCAAGAGCGTGGAGGGCGACAGGGAAATGGGTC
TGCAGTCCTTGCCGGTAGCGTTCGGGGTGGAGACGGCGAAGTGGATATGC
GTTGCCTCGATCGATGCTACGCAGCTGGGCATCGCTGCGTGGCTATATTA
CATCGGGGAGCCCACATACGCGGCTATTCTGACCGCGCTGGTCCTGCCAC
AGATTTTGGCGCAGTTCAAGTACTTTCTTCCAGATCCCGTCGAGAATGAC
GTCAAGTGAGTGGTGATCCTCACCCTACTATACTCGTGGGCGGGGCTAGG
CATTGCGATCGTCAACGACTTCAAGAGCGTGGAGGGCGACAGGGAAATGG
GTCTGCAGTCCTTGCCGGTAGCGTTCGGGGTGGAGACGGCGAAGTGGATA
TGCGTTGCCTCGATCGATGCTACGCAGCTGGGCATCGCTGCGTGGCTATA
TTACATCGGGGAGCCCACATACGCGGCTATTCTGACCGCGCTGGTCCTGC
CACAGATTTTGGCGCAGTTCAAGTACTTTCTTCCAGATCCCGTCGAGAAT
GACGTCAAGTGA
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