prot_H-elongata_contig48628.12021.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig48628.12021.1
Unique Name	prot_H-elongata_contig48628.12021.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	159

Homology

[Close]

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot
Match: D7G8R8_ECTSI (CNH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R8_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 3.910e-57
Identity = 114/191 (59.69%), Postives = 135/191 (70.68%), Query Frame = 0

Query:    1 VKTSEKFNPARLLSVIPSHFLEEHALLLSRLGRHEEVLHIYVRQLKNISMAEAYCDRIWDKCRSS----------------NAPLSPDEEVYLSLLRVYL---NK-----PSEGELGTPYE--------ASSGE--AGLDNAVSLLERHFDRVDPVQVMSLMPPDVPMKKLMSFLGPSIRHADARRRKSQV 157
            ++TSEK+NPARLLSVIPSHFLEEHALLLSRLGRHEEVLHIYVRQLKN  MAEAYC RIW++C S+                 A  SPDEEVYL LL+VYL   NK     P++ + G+P          A+ GE   GLD AVSLLERHF RVDPV+VM+L+PP VP+ KL+ FL  ++RHA+ARRR +QV
Sbjct:  847 LQTSEKYNPARLLSVIPSHFLEEHALLLSRLGRHEEVLHIYVRQLKNREMAEAYCGRIWERCESAAKAKSTAKRGAPADAATATPSPDEEVYLFLLKVYLQGQNKAGGHHPAQSKAGSPSSLKVSDDGVAAVGEEVGGLDEAVSLLERHFSRVDPVKVMALLPPSVPVSKLVPFLSSAVRHAEARRRSNQV 1037

[Close]

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot
Match: A0A6H5L3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y1_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 4.900e-57
Identity = 111/194 (57.22%), Postives = 133/194 (68.56%), Query Frame = 0

Query:    1 VKTSEKFNPARLLSVIPSHFLEEHALLLSRLGRHEEVLHIYVRQLKNISMAEAYCDRIWDKCRSS-------------------NAPLSPDEEVYLSLLRVYL---NK-----PSEGELGTPYEASSGE----------AGLDNAVSLLERHFDRVDPVQVMSLMPPDVPMKKLMSFLGPSIRHADARRRKSQV 157
            ++TSEK+NPARLLSVIPSHFLEEHALLLSRLGRHEEVLHIYVRQLKN  MAEAYC RIW++C S+                    A  SPDEEVYL LL+VYL   NK     P++ + G+P    + +           GLD AVSLLERHF RVDPV+VM+L+PP VP+ KL+ FL  ++RHA+ARRR +QV
Sbjct:  367 LQTSEKYNPARLLSVIPSHFLEEHALLLSRLGRHEEVLHIYVRQLKNREMAEAYCGRIWERCESAAKAKSAAKQGASAGERHAATATPSPDEEVYLCLLKVYLQGQNKAGGHHPAQIKAGSPSSRKASDDGVAAVGDEVGGLDEAVSLLERHFSRVDPVKVMALLPPSVPVAKLLPFLSSAVRHAEARRRSNQV 560

[Close]

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot
Match: A0A835YS55_9STRA (CNH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS55_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.270e-30
Identity = 72/186 (38.71%), Postives = 105/186 (56.45%), Query Frame = 0

Query:    1 VKTSEKFNPARLLSVIPSHFLEEHALLLSRLGRHEEVLHIYVRQLKNISMAEAYCDRIWDKCRSSNAPLSPDEEVYL-----------------------------SLLRVYLNKPSEGELGTPYEASSGEAGLDNAVSLLERHFDRVDPVQVMSLMPPDVPMKKLMSFLGPSIRHADARRRKSQV 157
            ++ S  ++ ARLL+V+PSHFL EHALLLSRLGRH+ VLHIYV QL++ ++AE YCDRIW++  +                                          S + + L K    + G   E   G+AGL+ AV+LLER + RVDP++ +  +P DVP+ +L  F GP++RH ++R R++QV
Sbjct:  796 LRASRSYSAARLLAVVPSHFLHEHALLLSRLGRHDAVLHIYVAQLRDAALAEEYCDRIWEQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSDVYLCLLKAYLAQRGQGGEG--GDAGLERAVALLERRYARVDPLKALDALPGDVPLARLSGFFGPAVRHHESRLRQAQV 979

[Close]

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot
Match: A0A3P8VQ28_CYNSE (VPS39 subunit of HOPS complex n=3 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VQ28_CYNSE)

HSP 1 Score: 103 bits (257), Expect = 1.060e-22
Identity = 61/159 (38.36%), Postives = 95/159 (59.75%), Query Frame = 0

Query:    1 VKTSEKFNPARLLSVIP-SHFLEEHALLLSRLGRHEEVLHIYVRQLKNISMAEAYCDRIWDKCRSSNAPLSPDEEVYLSLLRVYLNKPSEGELGT-PYEASSGEAGLDNAVSLLERHFDRVDPVQVMSLMPPDVPMKKLMSFLGPSIRHADARRRKSQV 157
            ++TS  + P+RL+S  P    LEE ALLL R+G HE+ L IYV  LK+ SMAE YC R +      N+ +  +++VYLSLLR+YL+ P    LG    E S  +A L  A+ +LE H  +++  + ++L+P + P++++  FL   +     R+R +QV
Sbjct:  656 LETSSSYEPSRLISNFPFDGLLEERALLLGRMGNHEQALFIYVHILKDTSMAEEYCHRHY------NSSVEGNKDVYLSLLRMYLSPPDVRCLGPIKMEVSGPQANLQAALQVLELHHSKLNTTKAINLLPANTPIREIRVFLESVLEEKAQRKRCNQV 808

[Close]

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot
Match: A0A8J9WNC7_9CHLO (Vam6/Vps39-like protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNC7_9CHLO)

HSP 1 Score: 102 bits (253), Expect = 3.650e-22
Identity = 63/174 (36.21%), Postives = 94/174 (54.02%), Query Frame = 0

Query:    4 SEKFNPARLLSVIP---SHFLEEHALLLSRLGRHEEVLHIYVRQLKNISMAEAYCDRIWDKCRSSNAPLSPDE-------------EVYLSLLRVYL----NKPSEGELGTPYEASSGEAGLDNAVSLLERHFDRVDPVQVMSLMPPDVPMKKLMSFLGPSIRHADARRRKSQV 157
            SE  +  R+L V+P     FLE  ALLL  LGRH+E L IYV Q+K   +AEAYCDR+++        L+ ++             ++YL+L++VYL    NKP     G   ++S+ EA       LL R  DR+D +  + L+P +VP+K  + FL  ++R A  ++R S V
Sbjct:  656 SEHIDAQRILLVVPLEDKRFLEIRALLLEHLGRHQEALEIYVHQMKEPRLAEAYCDRMYEAAAKQKGQLNGNQMAAWSGLAAQHNYDMYLALIQVYLERQDNKPDSARKGRAPDSSNWEA----VARLLSRKHDRIDSLHALDLLPGEVPLKATLPFLEGALRAAGEKKRNSAV 825

[Close]

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot
Match: I0YM78_COCSC (CNH domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YM78_COCSC)

HSP 1 Score: 102 bits (253), Expect = 3.730e-22
Identity = 65/174 (37.36%), Postives = 98/174 (56.32%), Query Frame = 0

Query:    4 SEKFNPARLLSVIPSH---FLEEHALLLSRLGRHEEVLHIYVRQLKNISMAEAYCDRIWD-----KCRSSNAPLS--------PDEEVYLSLLRVYL----NKPSEGELGTPYEASSGEAGLDNAVSLLERHFDRVDPVQVMSLMPPDVPMKKLMSFLGPSIRHADARRRKSQV 157
            S+  +  R+L V+PS    FLE  ALLL  LGRH+E L IYV Q+K+  +AEAYCDR+++     K + S A ++        P+ ++YL+L++VYL    N P     G   ++S+ EA       LL R  DR+D +  + L+P +VP+K  + FL  ++R    +RR S V
Sbjct:  633 SQHIDAKRILLVVPSEDQRFLEVRALLLEHLGRHQEALEIYVHQMKDPRLAEAYCDRMYEAAAKQKGQQSGAQMAAWSGLASQPNYDMYLALIQVYLERQDNVPDSARKGRAPDSSNWEA----VARLLSRKHDRIDSLHALDLLPGEVPLKAALPFLEGALRAGGEKRRNSAV 802

[Close]

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot
Match: UPI0003F07F64 (vam6/Vps39-like protein-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F07F64)

HSP 1 Score: 101 bits (251), Expect = 6.760e-22
Identity = 57/158 (36.08%), Postives = 88/158 (55.70%), Query Frame = 0

Query:    1 VKTSEKFNPARLLSVIP-SHFLEEHALLLSRLGRHEEVLHIYVRQLKNISMAEAYCDRIWDKCRSSNAPLSPDEEVYLSLLRVYLNKPSEGELGTPYEASSGEAGLDNAVSLLERHFDRVDPVQVMSLMPPDVPMKKLMSFLGPSIRHADARRRKSQV 157
            ++TS  + P +LL+  P   F EE ALLL RLGRHE+ L IY   LK+  MAE YC R +D  +  N      + VYL LL++Y+N P    LG    A S +  +D ++ +L+ H  ++D  + + L+P  V +K +  FL   +    A++R +Q+
Sbjct:  660 LETSLHYVPEKLLTYFPFDSFFEERALLLGRLGRHEQALAIYAHILKDTKMAEDYCRRNYDPDKEGN------KNVYLCLLKMYINPPDASTLGVMVNAESAKPNIDASLCVLKLHQYKIDMAKALDLIPSTVQVKDVCKFLECVLEDGSAKKRNNQI 811

[Close]

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot
Match: A0A8C5DMJ0_9TELE (VPS39 subunit of HOPS complex n=3 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5DMJ0_9TELE)

HSP 1 Score: 100 bits (248), Expect = 1.680e-21
Identity = 60/159 (37.74%), Postives = 93/159 (58.49%), Query Frame = 0

Query:    1 VKTSEKFNPARLLSVIP-SHFLEEHALLLSRLGRHEEVLHIYVRQLKNISMAEAYCDRIWDKCRSSNAPLSPDEEVYLSLLRVYLNKPSEGELGT-PYEASSGEAGLDNAVSLLERHFDRVDPVQVMSLMPPDVPMKKLMSFLGPSIRHADARRRKSQV 157
            +K S  + PARL+S  P    LEE ALLL R+G+HE+ L IYV  LK+  MAE YCDR +      N+ +  +++VYLSLLR+YL+ P    LG    E    +A L  A+ +LE H  +++  + ++L+P +  ++++  FL   +     R+R +QV
Sbjct:  586 LKVSSCYEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCDRHY------NSSIEGEKDVYLSLLRMYLSPPDVDCLGPIKMEMLEPQANLQAALQVLELHHSKLNTTKAINLLPANTQIREIRVFLESVLEEKAQRKRCNQV 738

[Close]

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot
Match: A0A8C5DMU3_9TELE (VPS39 subunit of HOPS complex n=2 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5DMU3_9TELE)

HSP 1 Score: 100 bits (248), Expect = 1.710e-21
Identity = 60/159 (37.74%), Postives = 93/159 (58.49%), Query Frame = 0

Query:    1 VKTSEKFNPARLLSVIP-SHFLEEHALLLSRLGRHEEVLHIYVRQLKNISMAEAYCDRIWDKCRSSNAPLSPDEEVYLSLLRVYLNKPSEGELGT-PYEASSGEAGLDNAVSLLERHFDRVDPVQVMSLMPPDVPMKKLMSFLGPSIRHADARRRKSQV 157
            +K S  + PARL+S  P    LEE ALLL R+G+HE+ L IYV  LK+  MAE YCDR +      N+ +  +++VYLSLLR+YL+ P    LG    E    +A L  A+ +LE H  +++  + ++L+P +  ++++  FL   +     R+R +QV
Sbjct:  668 LKVSSCYEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCDRHY------NSSIEGEKDVYLSLLRMYLSPPDVDCLGPIKMEMLEPQANLQAALQVLELHHSKLNTTKAINLLPANTQIREIRVFLESVLEEKAQRKRCNQV 820

[Close]

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot
Match: W2QH14_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2QH14_PHYPN)

HSP 1 Score: 99.4 bits (246), Expect = 3.220e-21
Identity = 59/158 (37.34%), Postives = 92/158 (58.23%), Query Frame = 0

Query:    7 FNPARLLSVIPSHFLEEHALLLSRLGRHEEVLHIYVRQLKNISMAEAYCDRIWDKCRSSNAPLSPDEEVYLSLLRVYLNKPSEGELGTP---YEASSG---EAGLDNAVSLLERHFDRVDPVQVMSLMPPDVPMKKLMSFLGPSIRHADARRRKSQVR 158
            F+P R+LS  P+  ++EHA LLS+LGRH EVL +Y  +LK+ ++AEAYC+R    C  S A    D  +Y +LL++YL +P+   +G+P   Y +SS       ++ A+++L ++ +R+D    + L+P DVP   L  F    I     R R  QV+
Sbjct:  795 FHPERMLSRTPTEMVDEHAALLSKLGRHLEVLQLYALELKDAALAEAYCNR----CYESKAA---DSSIYSTLLKIYL-RPASAAVGSPPKPYRSSSSGLQSEAVNAAINVLNKYAERIDVSTALELLPADVPTAPLAGFFRRVIERQVERFRNGQVK 944

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot

BLAST of mRNA_H-elongata_contig48628.12021.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8R8_ECTSI	3.910e-57	59.69	CNH domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L3Y1_9PHAE	4.900e-57	57.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835YS55_9STRA	1.270e-30	38.71	CNH domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A3P8VQ28_CYNSE	1.060e-22	38.36	VPS39 subunit of HOPS complex n=3 Tax=Cynoglossus ...	[more]
A0A8J9WNC7_9CHLO	3.650e-22	36.21	Vam6/Vps39-like protein n=1 Tax=Coccomyxa sp. Obi ...	[more]
I0YM78_COCSC	3.730e-22	37.36	CNH domain-containing protein n=1 Tax=Coccomyxa su...	[more]
UPI0003F07F64	6.760e-22	36.08	vam6/Vps39-like protein-like n=1 Tax=Saccoglossus ...	[more]
A0A8C5DMJ0_9TELE	1.680e-21	37.74	VPS39 subunit of HOPS complex n=3 Tax=Gouania will...	[more]
A0A8C5DMU3_9TELE	1.710e-21	37.74	VPS39 subunit of HOPS complex n=2 Tax=Gouania will...	[more]
W2QH14_PHYPN	3.220e-21	37.34	Uncharacterized protein n=9 Tax=Phytophthora TaxID...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019453	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2	PFAM	PF10367	Vps39_2	coord: 109..157 e-value: 3.3E-8 score: 33.9
IPR032914	Vam6/VPS39/TRAP1 family	PANTHER	PTHR12894	CNH DOMAIN CONTAINING	coord: 2..158

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig48628	contig	H-elongata_contig48628:2894..4154 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig48628.12021.1	mRNA_H-elongata_contig48628.12021.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig48628 2894..4154 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig48628.12021.1 ID=prot_H-elongata_contig48628.12021.1|Name=mRNA_H-elongata_contig48628.12021.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
VKTSEKFNPARLLSVIPSHFLEEHALLLSRLGRHEEVLHIYVRQLKNISM
AEAYCDRIWDKCRSSNAPLSPDEEVYLSLLRVYLNKPSEGELGTPYEASS
GEAGLDNAVSLLERHFDRVDPVQVMSLMPPDVPMKKLMSFLGPSIRHADA
RRRKSQVR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019453	VPS39/TGF_beta_rcpt-assoc_2
IPR032914	Vam6/VPS39/TRAP1