prot_H-elongata_contig48381.11990.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig48381.11990.1
Unique Nameprot_H-elongata_contig48381.11990.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length41
Homology
BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: D8LES6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LES6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 6.120e-16
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0
Query:    1 VLAVCASCDSAYHLGCVEPALPRVPFHDWFCGDCA 35
            VL VC +CDSAYHLGCVEPALPR+PFHDWFCGDCA
Sbjct:  360 VLVVCVACDSAYHLGCVEPALPRMPFHDWFCGDCA 394          
BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: UPI00188585F9 (PHD and RING finger domain-containing protein 1-like n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI00188585F9)

HSP 1 Score: 53.1 bits (126), Expect = 5.570e-7
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 0
Query:    2 LAVCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKVRA 39
            L +C  CD+ YHL C+EP L  VP  +WFC +CA +RA
Sbjct:  163 LLLCDGCDAGYHLDCLEPPLDAVPVDEWFCPECAPLRA 200          
BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: UPI001C900EE3 (PHD and RING finger domain-containing protein 1-like n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C900EE3)

HSP 1 Score: 52.8 bits (125), Expect = 7.580e-7
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 0
Query:    2 LAVCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKVRA 39
            L +C  CD+ YHL C+EP L  VP  +WFC +CA +RA
Sbjct:  174 LLLCDGCDAGYHLDCLEPPLHEVPTDEWFCPECAPLRA 211          
BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: A0A7E6E393_9CHIR (PHD and RING finger domain-containing protein 1 isoform X1 n=9 Tax=Phyllostomus TaxID=9422 RepID=A0A7E6E393_9CHIR)

HSP 1 Score: 51.2 bits (121), Expect = 2.650e-6
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0
Query:    2 LAVCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKVRAA 40
            L +C SCDS YH+ C++P L  VP  +WFC +CA   AA
Sbjct:  194 LLLCDSCDSGYHMECLDPPLQEVPVDEWFCPECAVPGAA 232          
BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: A0A8B7P023_HYAAZ (uncharacterized protein LOC108674966 isoform X1 n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7P023_HYAAZ)

HSP 1 Score: 51.2 bits (121), Expect = 2.660e-6
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 0
Query:    4 VCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKV 37
            +C SCDS YH+ C+EPAL  VP  +WFC  C+ +
Sbjct:  178 LCDSCDSGYHMDCLEPALEVVPIEEWFCPSCSLI 211          
BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: A0A232EV31_9HYME (RING-type E3 ubiquitin transferase n=3 Tax=Pteromalinae TaxID=272242 RepID=A0A232EV31_9HYME)

HSP 1 Score: 48.9 bits (115), Expect = 1.740e-5
Identity = 16/31 (51.61%), Postives = 22/31 (70.97%), Query Frame = 0
Query:    4 VCASCDSAYHLGCVEPALPRVPFHDWFCGDC 34
            +C  C+  YH+GC+ PALP+VP  DW+C  C
Sbjct:  304 LCDECEDEYHIGCLTPALPKVPEEDWYCPRC 334          
BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: A0A068U991_COFCA (Uncharacterized protein n=7 Tax=Coffea TaxID=13442 RepID=A0A068U991_COFCA)

HSP 1 Score: 48.5 bits (114), Expect = 2.390e-5
Identity = 16/32 (50.00%), Postives = 21/32 (65.62%), Query Frame = 0
Query:    4 VCASCDSAYHLGCVEPALPRVPFHDWFCGDCA 35
            +C  CD  YHL C+ P +PRVPF  W+C  C+
Sbjct:   97 LCDKCDKGYHLDCLRPIVPRVPFGHWYCPSCS 128          
BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: A0A2D4C314_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C314_PYTIN)

HSP 1 Score: 47.8 bits (112), Expect = 4.470e-5
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 0
Query:    4 VCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKVRAA 40
            +C SCD+AYHL C+EPAL  +P  +W+C  C   R +
Sbjct:  978 LCDSCDAAYHLFCLEPALDEIPSGNWYCPRCPIQRVS 1014          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LES6_ECTSI6.120e-1688.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00188585F95.570e-752.63PHD and RING finger domain-containing protein 1-li... [more]
UPI001C900EE37.580e-752.63PHD and RING finger domain-containing protein 1-li... [more]
A0A7E6E393_9CHIR2.650e-651.28PHD and RING finger domain-containing protein 1 is... [more]
A0A8B7P023_HYAAZ2.660e-652.94uncharacterized protein LOC108674966 isoform X1 n=... [more]
A0A232EV31_9HYME1.740e-551.61RING-type E3 ubiquitin transferase n=3 Tax=Pteroma... [more]
A0A068U991_COFCA2.390e-550.00Uncharacterized protein n=7 Tax=Coffea TaxID=13442... [more]
A0A2D4C314_PYTIN4.470e-548.65Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..40
e-value: 6.1E-12
score: 47.1
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 4..35
e-value: 1.3E-7
score: 31.4
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 3..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48381contigH-elongata_contig48381:3506..3628 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48381.11990.1mRNA_H-elongata_contig48381.11990.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig48381 3506..3628 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig48381.11990.1 ID=prot_H-elongata_contig48381.11990.1|Name=mRNA_H-elongata_contig48381.11990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
VLAVCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKVRAAS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD