mRNA_H-elongata_contig48331.11981.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig48331.11981.1 vs. uniprot
Match: D7FV70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV70_ECTSI) HSP 1 Score: 290 bits (743), Expect = 1.900e-95 Identity = 159/227 (70.04%), Postives = 173/227 (76.21%), Query Frame = 1
Query: 1 MPKGGRLIFKGGEPAMSLKGKKKDKLKRKRDKALARAETELGSFSTATESDELAGVAAADESQRQPLEEEMRPVSGTGRITSSGTAVQGHETKFMEELHSGDAVLITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIKAPRVELSAEAKKEEAKRRKTQEEDSAFGTYAGSGGKRLVYRERTPQGNYRIIERTVDEAMTREQMLDTRAKKKADRHCN 681
MPKGGRL+FKGGE A+S +GKKKDKL + E+ EMRPVSGTGRITSSGTAV GHE KFM+ELHSGDA+LITHPTTLREETRI+KMVLSNMSI ISSPFSSDLISTT FR+IKAPR+E+SAE K EE K+RK QEEDSAFGTYAG+GGKRLVYRERTP GNYRIIE TVDEAMTRE+MLD RA KKADRHCN
Sbjct: 1 MPKGGRLVFKGGEVAVSSRGKKKDKLX-----XXXXXXXXXXXXXSTGEAAXXXXXXXXXXXXXXXXXXEMRPVSGTGRITSSGTAVHGHEAKFMDELHSGDAILITHPTTLREETRIIKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEERKKRKVQEEDSAFGTYAGAGGKRLVYRERTPAGNYRIIETTVDEAMTREEMLDMRATKKADRHCN 222
BLAST of mRNA_H-elongata_contig48331.11981.1 vs. uniprot
Match: A0A835Z5I8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I8_9STRA) HSP 1 Score: 171 bits (432), Expect = 6.240e-49 Identity = 88/159 (55.35%), Postives = 119/159 (74.84%), Query Frame = 1
Query: 208 EMRPVSGTGRITSSGTAVQGHETKFMEELHSGDAVLITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIKAPRVELSAEAKKEEAKRRKTQEEDSAFGTYAGSGGKRLVYRERTP--QGNYRIIERTVDEAMTREQMLDTRAKKKADRHC 678
E+RPV+GTGRI+SSGT V GH T+FM EL +GDA+++THPT+L +ETR+V+MVLS+ G+SS FS+DLISTT F+++ APR E AE AKR + QEED AFGTY+ GG ++VYR + G Y I+ ++MTRE++L+ R+KKKADR+C
Sbjct: 33 ELRPVAGTGRISSSGTVVTGHGTRFMSELRAGDALIVTHPTSLAQETRLVRMVLSDAHAGVSSAFSTDLISTTAFQYVSAPRGE--AEDPAVAAKRARLQEEDRAFGTYSSGGGSKVVYRVKKAGVYGGYEIVTADSKKSMTREELLNVRSKKKADRYC 189
BLAST of mRNA_H-elongata_contig48331.11981.1 vs. uniprot
Match: A0A024UEL5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UEL5_9STRA) HSP 1 Score: 156 bits (394), Expect = 5.650e-43 Identity = 86/159 (54.09%), Postives = 111/159 (69.81%), Query Frame = 1
Query: 220 VSGTGRITSSGTAVQGHE-TKFMEELHSGDAVLITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIKAPRVELSAEAKKEEAKRRKTQEEDSAFGTYAG--SGGKRLVYRERTP--QGNYRIIERTVDEAMTREQMLDTRAKKKADRHCN 681
+ GTGRI +SGT V G TKF EL GDA++I HPT+L+EETRIVKMVLS++S+ ISSPFSSDL+STT F +IKAP E+ +A + + + +K EE SAFGTYAG + G YR + G Y II+ T D +RE++LD R+K+K DRHCN
Sbjct: 53 LQGTGRILTSGTTVMGKMGTKFFHELSIGDALIINHPTSLKEETRIVKMVLSDVSVSISSPFSSDLVSTTTFWYIKAPPEEVDKDAVESKKRSKKNDEEASAFGTYAGGTTAGTEFTYRVKKAGVYGGYAIIKETADANRSREELLDIRSKRKGDRHCN 211
BLAST of mRNA_H-elongata_contig48331.11981.1 vs. uniprot
Match: A0A7S2S051_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S051_9STRA) HSP 1 Score: 154 bits (390), Expect = 2.890e-42 Identity = 88/157 (56.05%), Postives = 113/157 (71.97%), Query Frame = 1
Query: 220 VSGTGRITSSGTAVQGHE-TKFMEELHSGDAVLITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIKAPRVELSAEAKKEEAKRRKTQEEDSAFGTYAGSGGKRLVYRERTPQ--GNYRI-IERTVDEAMTREQMLDTRAKKKADRHC 678
V+G GRI++SGT V GHE T+FM++L GDAV+ITHPTT+ +ETRIVKMVLS++S+ ISSPFSSDLIST +FRF+KAP E+ EA + + K++ E AFGTYAG G + VYRE+ G Y I +E T D + T +L+ RA KKADR C
Sbjct: 65 VAGKGRISTSGTTVHGHEGTQFMKQLKHGDAVIITHPTTMMDETRIVKMVLSDVSMSISSPFSSDLISTVEFRFVKAPEEEVDYEAIENQKKQKLLDTEKEAFGTYAGDLGTKFVYREKKAGAFGGYAIRVEDTADRSRT--DLLEMRAGKKADRFC 219
BLAST of mRNA_H-elongata_contig48331.11981.1 vs. uniprot
Match: W4H648_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H648_9STRA) HSP 1 Score: 154 bits (388), Expect = 4.300e-42 Identity = 84/159 (52.83%), Postives = 110/159 (69.18%), Query Frame = 1
Query: 220 VSGTGRITSSGTAVQGHE-TKFMEELHSGDAVLITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIKAPRVELSAEAKKEEAKRRKTQEEDSAFGTYAG--SGGKRLVYRERTP--QGNYRIIERTVDEAMTREQMLDTRAKKKADRHCN 681
+ GTGRI +SGT V G TKF EL GDA++I HPT+++EETRIVKMVLS++SI ISSPFSSDL+STT F +IKAP E+ +A + + + +K +EE AFGTYAG S G YR + G Y +++ T D +RE +LD R+K+K DRHCN
Sbjct: 52 LQGTGRILTSGTTVMGKMGTKFYHELSIGDALIIMHPTSMKEETRIVKMVLSDVSISISSPFSSDLVSTTTFSYIKAPPEEIDQDAIETKKRSKKNEEETFAFGTYAGGTSAGSEFTYRVKKAGAYGGYAVLKETADANRSREDLLDIRSKRKGDRHCN 210
BLAST of mRNA_H-elongata_contig48331.11981.1 vs. uniprot
Match: A0A485LKB6_9STRA (Aste57867_21986 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKB6_9STRA) HSP 1 Score: 152 bits (383), Expect = 2.610e-41 Identity = 86/168 (51.19%), Postives = 112/168 (66.67%), Query Frame = 1
Query: 196 PLEEEMR--PVSGTGRITSSGTAVQGHE-TKFMEELHSGDAVLITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIKAPRVELSAEAKKEEAKRRKTQEEDSAFGTYAG--SGGKRLVYRERTP--QGNYRIIERTVDEAMTREQMLDTRAKKKADRHC 678
P EEE + V GTGRI +SGT V G T+F EL GDA++I HPT+L+EETRI+ MVLS++S+ ISSPFS+DL+STT F +IKAP+ E+ + + KR+K EE AFGTYAG + G YR + G Y I++ T D +RE +LD R+KKK DRHC
Sbjct: 45 PAEEEFQLVKVQGTGRILTSGTTVMGKMGTRFSHELSIGDALIIVHPTSLKEETRIITMVLSDVSVSISSPFSTDLVSTTTFSYIKAPKEEVDVADLENKKKRKKNDEELFAFGTYAGGTTAGTEFTYRVKKAGVYGGYAILKETADSNRSREDLLDIRSKKKGDRHC 212
BLAST of mRNA_H-elongata_contig48331.11981.1 vs. uniprot
Match: A0A1V9YA44_9STRA (Niemann-Pick C1 protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA44_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.400e-40 Identity = 86/163 (52.76%), Postives = 110/163 (67.48%), Query Frame = 1
Query: 208 EMRPVSGTGRITSSGTAVQGHE-TKFMEELHSGDAVLITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIKAPRVELSAEAKKEEAKRRKTQEEDSAFGTYAG--SGGKRLVYRERTP--QGNYRIIERTVDEAMTREQMLDTRAKKKADRHCN 681
E+ V GTGRI +SGT V G T+F EL GDA++I HPT+L+EETRIV+MVLS++SI ISS FSSDL+STT F +IKAP K+ K++K EE AFGTYAG + G +L YR + G Y II+ T D + +RE++LD R+K K DRHCN
Sbjct: 50 ELVKVQGTGRILTSGTTVMGKMGTRFASELSVGDAMIIVHPTSLQEETRIVRMVLSDVSISISSAFSSDLVSTTTFHYIKAPPDXXXXAQKELATKKQKKDEEGFAFGTYAGGTTAGSQLTYRVKKSGVYGGYTIIKETADTSRSREELLDLRSKMKGDRHCN 212
BLAST of mRNA_H-elongata_contig48331.11981.1 vs. uniprot
Match: A0A7S3ZK63_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZK63_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.980e-40 Identity = 83/146 (56.85%), Postives = 106/146 (72.60%), Query Frame = 1
Query: 223 SGTGRITSSGTAVQGHE-TKFMEELHSGDAVLITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIKAPRVELSAEAKKEEAKRRKTQEEDSAFGTYAGSGGKRLVYRERTP-----QGNYRIIERTVDEAMTREQML 642
+G+GRI+SSGTAV+GH+ T+FM EL +GDAV+ITHPTTL EETRIVKMVLS++SI ISS FSSDL+STT FR++ APRVE SA K+ +A +R+ ED A G YAG GG LVYR R ++I+ + E TR ++L
Sbjct: 67 AGSGRISSSGTAVRGHDGTRFMAELRAGDAVVITHPTTLTEETRIVKMVLSDVSIAISSAFSSDLVSTTAFRYVAAPRVEQSAADKERDAAQRRVLREDGAVGDYAGGGGTTLVYRTRKKGAVGGSNGWKIVTEKLAEPKTRTELL 212
BLAST of mRNA_H-elongata_contig48331.11981.1 vs. uniprot
Match: A0A6G0XV17_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV17_9STRA) HSP 1 Score: 149 bits (376), Expect = 2.790e-40 Identity = 85/166 (51.20%), Postives = 111/166 (66.87%), Query Frame = 1
Query: 196 PLEEEMRPVSGTGRITSSGTAVQGHE-TKFMEELHSGDAVLITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIKAPRVELSAEAKKEEAKRRKTQEEDSAFGTYAGSG--GKRLVYRERTP--QGNYRIIERTVDEAMTREQMLDTRAKKKADRHC 678
P E ++ + G+GRI +SGT V G T+F EL GDA++I HPT+L+EETRIV MVLS++SI ISSPFSSDLISTT F +IKAP E+ + + + +R+ QEE AFGTYAG G YR + G Y I++ T D +RE++LD R+KKK DRHC
Sbjct: 46 PEEFQLVKLQGSGRILTSGTTVMGKMGTRFSHELSIGDALIILHPTSLKEETRIVTMVLSDVSISISSPFSSDLISTTTFSYIKAPPEEVDKDELETKKRRKNEQEESFAFGTYAGGTTVGTEYTYRVKKSGAYGGYAIVKETADSNRSREELLDIRSKKKGDRHC 211
BLAST of mRNA_H-elongata_contig48331.11981.1 vs. uniprot
Match: A0A7S2D383_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D383_9STRA) HSP 1 Score: 145 bits (367), Expect = 3.720e-39 Identity = 78/156 (50.00%), Postives = 111/156 (71.15%), Query Frame = 1
Query: 223 SGTGRITSSGTAVQGHE-TKFMEELHSGDAVLITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIKAPRVELSAEAKKEEAKRRKTQEEDSAFGTYAGSGGKRLVYRERTP--QGNYRIIERTVDEA-MTREQMLDTRAKKKADRHC 678
+G+GRI++SGT V GH+ ++FM+ELH+GDA+++THP +L +ETRI+ MVLSN+S+ +SS FSSDLIST+ FRF+ PR E+ + ++++ E AFGTYAG G++ VYRER P G Y I EA +R ++L+ R+KKKADR C
Sbjct: 39 TGSGRISTSGTIVTGHDGSRFMDELHNGDAIIVTHPASLIDETRIITMVLSNVSMNMSSAFSSDLISTSDFRFVNQPREEVDHTIAESRKRQKRVDGEKDAFGTYAGDLGEKFVYRERKPGVYGGYYICSEDNGEAPKSRGELLNMRSKKKADRMC 194 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48331.11981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48331.11981.1 >prot_H-elongata_contig48331.11981.1 ID=prot_H-elongata_contig48331.11981.1|Name=mRNA_H-elongata_contig48331.11981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp MPKGGRLIFKGGEPAMSLKGKKKDKLKRKRDKALARAETELGSFSTATESback to top mRNA from alignment at H-elongata_contig48331:2353..4233+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48331.11981.1 ID=mRNA_H-elongata_contig48331.11981.1|Name=mRNA_H-elongata_contig48331.11981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1881bp|location=Sequence derived from alignment at H-elongata_contig48331:2353..4233+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48331:2353..4233+ >mRNA_H-elongata_contig48331.11981.1 ID=mRNA_H-elongata_contig48331.11981.1|Name=mRNA_H-elongata_contig48331.11981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig48331:2353..4233+ (Himanthalia elongata Himel1 dioecious)back to top |