mRNA_H-elongata_contig48189.11966.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48189.11966.1
Unique NamemRNA_H-elongata_contig48189.11966.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48189.11966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48189contigH-elongata_contig48189:3310..3716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size409
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930794.9089522-UTR-H-elongata_contig48189:3309..33351622930794.9089522-UTR-H-elongata_contig48189:3309..3335Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48189 3310..3335 +
1691679573.4616103-UTR-H-elongata_contig48189:3309..33351691679573.4616103-UTR-H-elongata_contig48189:3309..3335Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48189 3310..3335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930794.925794-CDS-H-elongata_contig48189:3335..37161622930794.925794-CDS-H-elongata_contig48189:3335..3716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48189 3336..3716 +
1691679573.470307-CDS-H-elongata_contig48189:3335..37161691679573.470307-CDS-H-elongata_contig48189:3335..3716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48189 3336..3716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48189.11966.1prot_H-elongata_contig48189.11966.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48189 3336..3716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48189.11966.1

>prot_H-elongata_contig48189.11966.1 ID=prot_H-elongata_contig48189.11966.1|Name=mRNA_H-elongata_contig48189.11966.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MEEIVVERDVMVQEASERARAAEDRAVELEAWAERKQAEMEEARKEAVTE
QDAIAQAASERACTAENLAVELKASVERKQVEIEDAKRVAVAQEAMVQDA
SERACAAKDRTSELETIVEQKQAEIEE
back to top

mRNA from alignment at H-elongata_contig48189:3310..3716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48189.11966.1 ID=mRNA_H-elongata_contig48189.11966.1|Name=mRNA_H-elongata_contig48189.11966.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=407bp|location=Sequence derived from alignment at H-elongata_contig48189:3310..3716+ (Himanthalia elongata Himel1 dioecious)
CGAGTTTGGAACGAAAGCAAGCCGAAATGGAGGAGATAGTCGTGGAGCGA
GATGTCATGGTTCAAGAGGCCTCCGAGCGCGCTCGGGCTGCAGAGGACCG
AGCAGTGGAGCTGGAGGCGTGGGCAGAAAGGAAGCAAGCCGAAATGGAAG
AGGCCAGAAAAGAGGCGGTAACAGAGCAGGATGCGATCGCCCAAGCGGCC
TCTGAGCGCGCTTGTACTGCCGAGAACCTAGCGGTAGAGCTGAAGGCGAG
TGTGGAACGAAAGCAGGTGGAAATTGAGGATGCCAAAAGGGTGGCTGTTG
CACAGGAGGCCATGGTTCAAGACGCCTCTGAGCGCGCTTGTGCTGCAAAA
GACCGAACGTCAGAGCTGGAGACGATTGTTGAACAAAAGCAAGCGGAAAT
CGAGGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig48189:3310..3716+

>mRNA_H-elongata_contig48189.11966.1 ID=mRNA_H-elongata_contig48189.11966.1|Name=mRNA_H-elongata_contig48189.11966.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig48189:3310..3716+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGAGATAGTCGTGGAGCGAGATGTCATGGTTCAAGAGGCCTCCGA
GCGCGCTCGGGCTGCAGAGGACCGAGCAGTGGAGCTGGAGGCGTGGGCAG
AAAGGAAGCAAGCCGAAATGGAAGAGGCCAGAAAAGAGGCGGTAACAGAG
CAGGATGCGATCGCCCAAGCGGCCTCTGAGCGCGCTTGTACTGCCGAGAA
CCTAGCGGTAGAGCTGAAGGCGAGTGTGGAACGAAAGCAGGTGGAAATTG
AGGATGCCAAAAGGGTGGCTGTTGCACAGGAGGCCATGGTTCAAGACGCC
TCTGAGCGCGCTTGTGCTGCAAAAGACCGAACGTCAGAGCTGGAGACGAT
TGTTGAACAAAAGCAAGCGGAAATCGAGGAGATGGAGGAGATAGTCGTGG
AGCGAGATGTCATGGTTCAAGAGGCCTCCGAGCGCGCTCGGGCTGCAGAG
GACCGAGCAGTGGAGCTGGAGGCGTGGGCAGAAAGGAAGCAAGCCGAAAT
GGAAGAGGCCAGAAAAGAGGCGGTAACAGAGCAGGATGCGATCGCCCAAG
CGGCCTCTGAGCGCGCTTGTACTGCCGAGAACCTAGCGGTAGAGCTGAAG
GCGAGTGTGGAACGAAAGCAGGTGGAAATTGAGGATGCCAAAAGGGTGGC
TGTTGCACAGGAGGCCATGGTTCAAGACGCCTCTGAGCGCGCTTGTGCTG
CAAAAGACCGAACGTCAGAGCTGGAGACGATTGTTGAACAAAAGCAAGCG
GAAATCGAGGAG
back to top