mRNA_H-elongata_contig48159.11958.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48159.11958.1
Unique NamemRNA_H-elongata_contig48159.11958.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A6H5JUK6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK6_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 9.230e-43
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 3
Query:   57 PHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPMACHPEVLKE 299
            P HE+L  SGGYDGK+MYW++GSEKP+AEIEYAH+  AVWDLGWHP+GHVLASGSNDHTVKFWVRNRVGD M C PEV+KE
Sbjct:  148 PQHERLLASGGYDGKMMYWVIGSEKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPEVVKE 228          
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: D8LKW8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW8_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 6.490e-41
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 3
Query:   57 PHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPMACHPEVLKE 299
            P HE+L  SGGYDGK+MYW+VGSEKP+AEIEYAH+  AVWDLGWHP+GHVLASGSNDHTVKFWVRNRVGD M C PE+ ++
Sbjct:  302 PQHERLLASGGYDGKMMYWVVGSEKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPELNED 382          
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A662XI34_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XI34_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.250e-35
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 3
Query:   12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
            TL+GH ++VTS+AWHP +E+LFVSG YDG LMYW VG E   A I  AH+  AVWD+ WHP+GHV+A+GSNDH+ KFW RNR GDPM
Sbjct:   39 TLKGHAREVTSIAWHPWYERLFVSGSYDGSLMYWEVGKENALASIPQAHDT-AVWDIQWHPVGHVVATGSNDHSTKFWCRNRPGDPM 124          
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A1Y3ATQ8_EURMA (Uncharacterized protein (Fragment) n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3ATQ8_EURMA)

HSP 1 Score: 122 bits (306), Expect = 1.260e-33
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 3
Query:   12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
            T +GH ++ + LAWHP HE LF SGG DG +++W+VG++K    +E AHE++ VW L WHP+GH+L SGSNDHT KFW RNR GD M
Sbjct:    7 TFRGHKKEASCLAWHPIHEGLFASGGSDGSILFWLVGTDKEIGGMENAHESI-VWSLSWHPLGHILTSGSNDHTCKFWTRNRPGDKM 92          
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: V5GSI5_ANOGL (Pre-mRNA 3' end processing protein (Fragment) n=2 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GSI5_ANOGL)

HSP 1 Score: 121 bits (304), Expect = 3.180e-33
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 3
Query:   12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
            T +GH ++ +S+AWHP HE LF SGG DG +M+W VG++K    IE AH+++ VW L WHP+GH+L SGSNDHT KFW RNR GD M
Sbjct:   62 TFRGHKKEASSVAWHPVHEGLFCSGGSDGAIMFWHVGADKEVGAIEQAHDSI-VWTLAWHPLGHILCSGSNDHTSKFWTRNRPGDQM 147          
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A2B4SC26_STYPI (Pre-mRNA 3' end processing protein WDR33 n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SC26_STYPI)

HSP 1 Score: 129 bits (324), Expect = 1.040e-32
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 3
Query:   12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
            T +GH ++ T+++WHP HE LFVSGG DG +M+W+VG+EK    +E AHE M VW L WHP+GH+L SGSNDH+ KFW RNR+GD M
Sbjct:  326 TFRGHKREATAISWHPVHESLFVSGGSDGSMMFWVVGAEKDVGNMEMAHEGM-VWSLAWHPLGHILCSGSNDHSSKFWTRNRLGDKM 411          
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A7S1UN25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UN25_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.250e-32
Identity = 50/89 (56.18%), Postives = 68/89 (76.40%), Query Frame = 3
Query:   12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSE-----KPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVG 263
            +L+GH ++VTS+AWHPH+E +F SGG DG L+YW VG++     +P A++ +AH+ MA+WDL WHP GH+LA+GSND   KFW RNR G
Sbjct:   43 SLKGHNKEVTSIAWHPHYESVFASGGMDGTLLYWNVGAKGSMNNEPAAKVPFAHD-MAIWDLAWHPCGHMLATGSNDRQTKFWARNRFG 130          
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: UPI0009E42302 (pre-mRNA 3' end processing protein WDR33-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E42302)

HSP 1 Score: 129 bits (323), Expect = 1.430e-32
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 3
Query:   12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
            T +GH ++ T+++WHP HE LFVSGG DG +M+W+VG+EK    +E AHE M VW L WHP+GH+L SGSNDH+ KFW RNR+GD M
Sbjct:  343 TFRGHKREATAISWHPVHESLFVSGGSDGSMMFWVVGAEKDVGNMEMAHEGM-VWSLAWHPLGHILCSGSNDHSSKFWTRNRLGDRM 428          
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: UPI000A2A5BB4 (pre-mRNA 3' end processing protein WDR33 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5BB4)

HSP 1 Score: 119 bits (297), Expect = 1.840e-32
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 3
Query:   12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
            + +GH ++ T++AWHP HE LF SGG DG +M+W  G EK    +E AH+ M VW L WHP+GH+L SGSNDH+ KFW RN++GD M
Sbjct:   34 SFRGHKREATAIAWHPIHESLFASGGSDGAIMFWNAGVEKDVGNMESAHDGM-VWSLAWHPLGHILCSGSNDHSSKFWTRNKLGDRM 119          
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A8J4Q399_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q399_9MYCE)

HSP 1 Score: 127 bits (318), Expect = 4.280e-32
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   30 QDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
            +++TS+AWHP HE LFVSGG+DG ++YW+VG + P  EI  AHEA +VW L WHP+GH+LASGSNDHT KFW RNR  D M
Sbjct:  365 KEMTSVAWHPQHEDLFVSGGFDGSILYWVVGQDNPQGEIYSAHEA-SVWSLSWHPIGHILASGSNDHTTKFWCRNRPADTM 444          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK6_9PHAE9.230e-4380.25CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LKW8_ECTSI6.490e-4177.78CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A662XI34_9STRA1.250e-3565.52Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A1Y3ATQ8_EURMA1.260e-3357.47Uncharacterized protein (Fragment) n=1 Tax=Eurogly... [more]
V5GSI5_ANOGL3.180e-3358.62Pre-mRNA 3' end processing protein (Fragment) n=2 ... [more]
A0A2B4SC26_STYPI1.040e-3259.77Pre-mRNA 3' end processing protein WDR33 n=3 Tax=P... [more]
A0A7S1UN25_9STRA1.250e-3256.18Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
UPI0009E423021.430e-3259.77pre-mRNA 3' end processing protein WDR33-like n=1 ... [more]
UPI000A2A5BB41.840e-3255.17pre-mRNA 3' end processing protein WDR33 n=1 Tax=E... [more]
A0A8J4Q399_9MYCE4.280e-3264.20Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48159contigH-elongata_contig48159:3000..4139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size294
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48159.11958.1prot_H-elongata_contig48159.11958.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48159 3005..4139 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930794.2521691-UTR-H-elongata_contig48159:2999..30041622930794.2521691-UTR-H-elongata_contig48159:2999..3004Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48159 3000..3004 -
1691679573.2241228-UTR-H-elongata_contig48159:2999..30041691679573.2241228-UTR-H-elongata_contig48159:2999..3004Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48159 3000..3004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930794.2641387-CDS-H-elongata_contig48159:3004..31771622930794.2641387-CDS-H-elongata_contig48159:3004..3177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48159 3005..3177 -
1691679573.2329643-CDS-H-elongata_contig48159:3004..31771691679573.2329643-CDS-H-elongata_contig48159:3004..3177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48159 3005..3177 -
1622930794.282704-CDS-H-elongata_contig48159:4018..41391622930794.282704-CDS-H-elongata_contig48159:4018..4139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48159 4019..4139 -
1691679573.2424002-CDS-H-elongata_contig48159:4018..41391691679573.2424002-CDS-H-elongata_contig48159:4018..4139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48159 4019..4139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48159.11958.1

>prot_H-elongata_contig48159.11958.1 ID=prot_H-elongata_contig48159.11958.1|Name=mRNA_H-elongata_contig48159.11958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
AQPLPFRDTDRTLPLLHGTRTTRSSSLAEATTESSCTGLLGQRSPTLRSS
MLTKPWRCGTSDGIPWGTSWRQGATITPSSSGSGIGWETPWPAIRRY*
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mRNA from alignment at H-elongata_contig48159:3000..4139-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48159.11958.1 ID=mRNA_H-elongata_contig48159.11958.1|Name=mRNA_H-elongata_contig48159.11958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1140bp|location=Sequence derived from alignment at H-elongata_contig48159:3000..4139- (Himanthalia elongata Himel1 dioecious)
GCACAACCTTTACCCTTCAGGGACACGGACAGGACGTTACCTCTCTTGCA TGGCACCCGCACCACGAGAAGCTCTTCGTTAGCGGAGGCTACGACGGAAA GCTCATGTACTGGATTGTTGGGTAAGGTGATGACCGGTTGATGTGATGAC GTCATGACCATACACCCAATCACACACGCACACACTCACTCAGACAGGCC TAAATATGTTGATTTCATTGAAGAAGCTTATTGTTTTTTGTTTTTGTTTT TTTTTATTCTCCTTTTTTTGCTGATAAAACTATTCAGCGTGTTATTATGA ATAGTAGGTTATATTATTAGTAATAATTCCATATATTAATATTGTACTGC GAAGTTGTATATTCACCATCTCCCCTACTGTGGTAATCCTCAGGAATTTC TCTATAAACCCATATATCTCTCCCCGGTTGGTAAACAAACACCAGCCATT CCGGGTGCTGCTGTAGCGAGGTTATATGACTAATCCCACCTATTGTAGTG CAACACTGTAAATCCATCATCCCCCCTACTGGGGTAATCCTAAGGAATCT CTCTATAAAAACCCATATATATCTTTCCCCGGTTGGTTAACGCCTTCTAT AGCTTATAGTCATATACGAATACAGTACGAATTTTTATCGCGATGTAGGT TCAGCACTCCTAAACCTCATCCACCAACGGTTTATCATTGCTGATTTATC CTTTTGTCACGTTTTTTTCGACCATTAGGATGCGTCTGCATTTGCCTGCC GTATTTTCTTATGAAGGAAGAAATGAATGAATGGATCGATTATTTAATCA GTTTATGGACTAAGTCATCCATATTCATTCATCGATGAATTTATGCATGT AATTATTATCTCTAGATATTTATTGATGTTGTTCCAACATTTTTCACTTT GCTAGACCTCCTAGCCCCCCCCCTCCATATTTCCCCTCCATCTTCTTGGG AAACCCGTGCAGGTCAGAGAAGCCCTACGCTGAGATCGAGTATGCTCACG AAGCCATGGCGGTGTGGGACCTCGGATGGCATCCCATGGGGCACGTCCTG GCGTCAGGGAGCAACGATCACACCGTCAAGTTCTGGGTCAGGAATCGGGT GGGAGACCCCATGGCCTGCCATCCGGAGGTATTGAAAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig48159:3000..4139-

>mRNA_H-elongata_contig48159.11958.1 ID=mRNA_H-elongata_contig48159.11958.1|Name=mRNA_H-elongata_contig48159.11958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig48159:3000..4139- (Himanthalia elongata Himel1 dioecious)
GCACAACCTTTACCCTTCAGGGACACGGACAGGACGTTACCTCTCTTGCA
TGGCACCCGCACCACGAGAAGCTCTTCGTTAGCGGAGGCTACGACGGAAA
GCTCATGTACTGGATTGTTGGGCACAACCTTTACCCTTCAGGGACACGGA
CAGGACGTTACCTCTCTTGCATGGCACCCGCACCACGAGAAGCTCTTCGT
TAGCGGAGGCTACGACGGAAAGCTCATGTACTGGATTGTTGGGTCAGAGA
AGCCCTACGCTGAGATCGAGTATGCTCACGAAGCCATGGCGGTGTGGGAC
CTCGGATGGCATCCCATGGGGCACGTCCTGGCGTCAGGGAGCAACGATCA
CACCGTCAAGTTCTGGGTCAGGAATCGGGTGGGAGACCCCATGGCCTGCC
ATCCGGAGGTATTGAGTCAGAGAAGCCCTACGCTGAGATCGAGTATGCTC
ACGAAGCCATGGCGGTGTGGGACCTCGGATGGCATCCCATGGGGCACGTC
CTGGCGTCAGGGAGCAACGATCACACCGTCAAGTTCTGGGTCAGGAATCG
GGTGGGAGACCCCATGGCCTGCCATCCGGAGGTATTGA
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