mRNA_H-elongata_contig48140.11955.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48140.11955.1
Unique NamemRNA_H-elongata_contig48140.11955.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A6H5L446_9PHAE (UDENN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L446_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.370e-50
Identity = 99/133 (74.44%), Postives = 111/133 (83.46%), Query Frame = 1
Query:    1 QVSIHCPAFLRAPLEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQAPFEAPLVNPLGYALDSVVVLDLDARPAS 399
            +VS++CPAFLRAPLE+T   LE W+TAVLF  V E TILRA+D+LLLEKTLVVCGRDIG+VS+ ATALLSLLDPFKWEGVFVPVVPL +MDVLDSPVPALVGVQAP     ++PL  A D V VLDLDA  AS
Sbjct:  653 KVSLYCPAFLRAPLELTPPSLELWSTAVLFGCVSERTILRALDLLLLEKTLVVCGRDIGIVSMAATALLSLLDPFKWEGVFVPVVPLALMDVLDSPVPALVGVQAP-----LDPLSSAADGVAVLDLDANNAS 780          
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A4D9CNF6_9STRA (UDENN domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNF6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.160e-21
Identity = 51/106 (48.11%), Postives = 73/106 (68.87%), Query Frame = 1
Query:   40 LEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQAPFEAPLVNPLGYAL 357
            L++   PL+ W  AVLF+ V    I++ V++LLLE++LVV G D G+VS  +TA +SLL PFKW+GVF+P++P  + D+L SPVP ++GVQ PF+     P   AL
Sbjct:  500 LDLPLVPLQDWTVAVLFSHVSVDVIIKCVNLLLLEQSLVVIGEDQGLVSAISTAFVSLLQPFKWDGVFIPLLPTALSDILQSPVPFVLGVQPPFDPTRSTPHAAAL 605          
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A482S8K5_9ARCH (DENN domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S8K5_9ARCH)

HSP 1 Score: 75.1 bits (183), Expect = 2.990e-13
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    4 VSIHCPAFL-RAPLEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQAP 318
            V++  P+++    +  T A ++ WA AVL   +P   I+    +LLLEK+L++ G D  +VSI  T  L LL P+KW G+FVP++P    +VL++PVP +VG+  P
Sbjct:   47 VNLSFPSYMDNLVVSKTQATIDMWAVAVLTYFIPTDVIVHIHLMLLLEKSLIILGSDAALVSILCTGFLHLLAPYKWTGIFVPLLPPLAQEVLEAPVPFIVGMYTP 152          
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A7S3GU22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU22_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.100e-11
Identity = 36/102 (35.29%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   10 IHCPAFL---RAPLEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVG 306
            I CP ++   +  L+      E W  AVLF  +    I + +++LL+EK+L++ G++ G+V+    A+++L+ PF WEG+FVP+VP    ++  +PVP +VG
Sbjct:   14 IRCPGYIEDFKVDLKALLTTKE-WTCAVLFTHLSSQIIFKIINLLLMEKSLIIHGKNAGIVTTITMAVINLISPFLWEGIFVPLVPDNARELFGAPVPLIVG 114          
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A7S3GQI8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQI8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.630e-11
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   61 LEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQA 315
            L+ W  A+L A +P   I++ +  LL E++L+V G D GMV+   +A   LL PF WEG+ VP++P+   + LD+PVP ++GV A
Sbjct:  707 LKEWTVAILIALLPSELIVKILSQLLQEQSLLVYGSDAGMVTAVVSAFTLLLQPFSWEGIHVPLLPMAAYEALDAPVPFVIGVVA 791          
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A6J1JNC5_CUCMA (uncharacterized protein LOC111488447 isoform X1 n=9 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JNC5_CUCMA)

HSP 1 Score: 69.3 bits (168), Expect = 4.040e-11
Identity = 35/82 (42.68%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   61 LEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVG 306
            L  W TA L  ++   T+L+ V V+LLEK ++V   ++G++S T  +L+ ++ PF+W+ +F+PV+P KM D+LD+PVP +VG
Sbjct:  563 LSIWTTATLCRALSLETVLQLVAVILLEKQVIVVCPNLGLLSATVLSLVPMICPFQWQSLFLPVLPGKMFDLLDAPVPFIVG 644          
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A484NLS7_9ASTE (UDENN domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484NLS7_9ASTE)

HSP 1 Score: 68.2 bits (165), Expect = 1.020e-10
Identity = 34/87 (39.08%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   52 SAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQ 312
            +A L  W TA    ++   TIL  +  +LLEK +V+   ++G++S    +L+ ++ PF+W+ +F+P++PLKM+D+LD+PVP +VG+Q
Sbjct:  590 AAALSVWTTAATCRALSLETILTMITGVLLEKQVVLICPNLGVLSALVLSLIPIIRPFQWQSLFLPILPLKMLDLLDAPVPFIVGLQ 676          
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: UPI000901FF5B (uncharacterized protein LOC109173826 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000901FF5B)

HSP 1 Score: 67.4 bits (163), Expect = 1.900e-10
Identity = 34/84 (40.48%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   61 LEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQ 312
            L  W TA +  ++   TIL  V  +LLEK +VV   ++G++S    +L+ ++ PF+W+ +F+P++P KM+D+LD+PVP +VG+Q
Sbjct:  578 LSVWTTATICRALSLETILALVTGVLLEKQVVVICPNLGILSALVLSLIPIIRPFQWQSLFLPILPRKMLDLLDAPVPFIVGLQ 661          
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: UPI0008FEBA2E (uncharacterized protein LOC101261930 isoform X2 n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=UPI0008FEBA2E)

HSP 1 Score: 67.4 bits (163), Expect = 1.900e-10
Identity = 34/84 (40.48%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   61 LEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQ 312
            L  W TA +  S+   TIL  +  +LLEK +V+   ++G++S    +L+ ++ PF+W+ +F+P++P KMMD LD+PVP +VG+Q
Sbjct:  591 LSLWTTATICRSLSIETILALITGVLLEKQVVIVCPNLGVLSAVVLSLIPIIRPFQWQSLFLPILPGKMMDFLDAPVPFIVGLQ 674          
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A7S1YZ68_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZ68_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.660e-10
Identity = 50/132 (37.88%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 QVSIHCPAFLRAPLEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQAPF----EAPLVNPLGYALDSVVVLDLD 384
            QVSI  PA  R PL         ++   LFAS+    IL  +  LL E  + +C +   ++     AL SLL PF W+G+++P++P  M+DVLD+PVP LVG+ + +    +AP   P+G     VV +DLD
Sbjct:  503 QVSIVRPAANRLPLV-------GFSYHPLFASLSVGNILVVLGCLLKETRVAICSQHYALLGPVCEALTSLLFPFVWQGMYIPIMPYSMLDVLDAPVPFLVGLHSRYLKDVQAP-ARPIG-----VVFVDLD 621          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L446_9PHAE3.370e-5074.44UDENN domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A4D9CNF6_9STRA8.160e-2148.11UDENN domain-containing protein n=2 Tax=Monodopsid... [more]
A0A482S8K5_9ARCH2.990e-1339.62DENN domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S3GU22_9STRA1.100e-1135.29Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3GQI8_9STRA1.630e-1142.35Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6J1JNC5_CUCMA4.040e-1142.68uncharacterized protein LOC111488447 isoform X1 n=... [more]
A0A484NLS7_9ASTE1.020e-1039.08UDENN domain-containing protein n=3 Tax=Cuscuta se... [more]
UPI000901FF5B1.900e-1040.48uncharacterized protein LOC109173826 n=2 Tax=Ipomo... [more]
UPI0008FEBA2E1.900e-1040.48uncharacterized protein LOC101261930 isoform X2 n=... [more]
A0A7S1YZ68_9STRA2.660e-1037.88Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48140contigH-elongata_contig48140:190..2578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue1.9e-44
Seed eggNOG ortholog2880.D7FZZ2
KEGG koko:K20161
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG3569@1,KOG3569@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDENN domain
Ec32 orthologEc-22_003540.1
Exons3
Model size399
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48140.11955.1prot_H-elongata_contig48140.11955.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48140 190..2578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930793.8321326-CDS-H-elongata_contig48140:189..3601622930793.8321326-CDS-H-elongata_contig48140:189..360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48140 190..360 -
1691679573.0253286-CDS-H-elongata_contig48140:189..3601691679573.0253286-CDS-H-elongata_contig48140:189..360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48140 190..360 -
1622930793.8463898-CDS-H-elongata_contig48140:1396..14441622930793.8463898-CDS-H-elongata_contig48140:1396..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48140 1397..1444 -
1691679573.0396223-CDS-H-elongata_contig48140:1396..14441691679573.0396223-CDS-H-elongata_contig48140:1396..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48140 1397..1444 -
1622930793.8640866-CDS-H-elongata_contig48140:2398..25781622930793.8640866-CDS-H-elongata_contig48140:2398..2578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48140 2399..2578 -
1691679573.0483637-CDS-H-elongata_contig48140:2398..25781691679573.0483637-CDS-H-elongata_contig48140:2398..2578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48140 2399..2578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48140.11955.1

>prot_H-elongata_contig48140.11955.1 ID=prot_H-elongata_contig48140.11955.1|Name=mRNA_H-elongata_contig48140.11955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
QVSIHCPAFLRAPLEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKT
LVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPAL
VGVQAPFEAPLVNPLGYALDSVVVLDLDARPAS
back to top

mRNA from alignment at H-elongata_contig48140:190..2578-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48140.11955.1 ID=mRNA_H-elongata_contig48140.11955.1|Name=mRNA_H-elongata_contig48140.11955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2389bp|location=Sequence derived from alignment at H-elongata_contig48140:190..2578- (Himanthalia elongata Himel1 dioecious)
CAGGTTTCCATTCATTGCCCGGCGTTTCTTCGTGCCCCTTTGGAGGTGAC CTCCGCCCCGCTGGAGGCGTGGGCCACCGCGGTGCTGTTCGCTTCTGTTC CGGAGGCGACAATACTACGCGCGGTCGACGTACTTCTGCTGGAAAAAACG CTCGTGGTCTGCGGCAGGGACATCGGCATGGTGAGGTAGATGGTCCATCC GGAGCGTTGCCGATTCTTCTACTTGAGACTAAAGTTGTCCGTGGACAAGA ATTGAGCCCCTTGACAGATGCGTCAAGGACACGTCCCTGAACTAAAACTA GTATATATTTATATTTTCCCAAAAGACGCCTTGACGCACTGTCAAGAACC TGTCAACCGACAACTATGCTTGAAAGAAGAGTGGACTCAATCTGCTTGAT GAGAATGTTGGGCGAAGGAACGTGCGCATATTTTTCGGAGCGCCAGGACG CACCTGCAAGCAAATTTGTGCAGAACGGAAAAATTACTTACCAGGTACAC ACAATTAGTATAGCTCCTAAGATTTTGGTGGACCCAGCCCGACCCTAACT CTAGCCCACACCCAATACTACTTGTAAGTAATTTTTCCGCCCTGCACAAA TGCGCTTGCAGGTGCGTCCTGCATTTAGGGGATCTCTATATTTTATACCT TGCGATCGGTTGACAGATTATTGACAGTGCGTCAAGGCGTCTTTTTGTAA AATATACTATTTTTAGTGTTGGGATGTGTCCTTGACGCGTCTGTCAAGGG GTTCAACTCTTGTCAACCGACAATTTTACTTTAGAACCTACAATACCAGT CGGAAGCGATTTTTGGCCGTTACAACTATATCAATCGAAGTCGACGTTTA TTCGGGGGGGGGGGTTCACATGGGTATGCTTGCTTTTGAAAAACAAAACC TACGTAAAGCTAATATGTTGAGAAATAGTATCGTTTATATGAAATACAGC CTGCGTCATTTTCTTCTTTTTTTTCTTCTAGTTTTGGAAGTCATTTTATT TTTTTTAAGTTCACCGCGAACATCAAGCGAGGCTTGCGAATCGACTCCAT CTGCCTAATTTGAAGACAAGAGTTATTACATCAACACCGCTGTTTAGCGA CAATGTCGCCCCTCCCCCGAAATGCCTTCATCAGGTTTCCATAACTGCCA CGGCCCTCCTGTCGCTGCTGGATCCTTTCAAGGTCAGGAGTAATTAGGGC TCGAAGTATACTATACTAATAATATATATAGATTGTTCCAGTGTTATTGG AATGCTTGGTCGGGGAGAGTTTTTGAAAATATACTTGTATATAAATTACA ACAAACGATGAATCACATGTGCCGATTTTGTGTTCAAAAAGTAGTATTGT ACACACATTCGAACCTGACGATAGCCCCTGGATTACACACCTCTCAGGAT GCTAAGAAGGCGTGGATGTTCGGAGGGTTGGAATGAGTTCATACGTTTTG AAAGAAAAATAATGTCTACTCACGGTGTGCTAAGGAGGCGTGAATGTTCG GAGGGTTGGAATGAGTTTATGTTATTTTTAAGAAAAACGACATATCTAGC AAACGTTCCAGACGCGGACTCGCACATTCCAGAAGCGGGCTCGCACGTTC AAGATGTTCCGCATGGTGTGGTACCGCGATCCCCGGAGCTTGTGGTAAAT GGCGGATGGCTTGAAGCAAAAGGGACACGCACTTGAAATAGTTGCGAACA TTGATTGACGCCGTAGTCGCTGGAAGTAGCGGTTGTCGCGTGCTATTGTG GGGTTGACTATATCAGGAAAAAACGTTTTTACATAGTAAGAGTACACGGA GCCAGAAGCCCATCAGATATGTATTTTCCTATTTCCTTATCGCCGGCTCG GGGCTCATCCCTCTGATCGCCGGCACGTAGAAATCGCTCACCCGTCAAAT AGTGCTGCTTCTACTGCTGCCGCTGCTGCTGTTAATTTTTTCGGGAGCAT GAACGACTACCTCGAACGCTACGAAACCGAGCGCGAGGCCGGTTCTGTTA ATTAGCTGTCGTGGTGGGTGGTGTGCCAATGTCATCTCTTCCCCTCGATC CCTTATTCCGGATTTTCTTGCAGTTGGAAGGCGTTTTTGTCGTGGGTGGT AGACCAATGATATCTCTGTCGCTTTCAAAAGAAGCGGTCAACACAACCGC TCCCTTGTTTATTTCTGATTTCATCTTTCCCTCTCCCCCTCGATCCCCTA TCCCCGGATTTCTTGTAGTGGGAAGGCGTTTTTGTACCCGTGGTGCCTCT CAAGATGATGGACGTGCTGGACAGCCCGGTGCCGGCCCTTGTAGGCGTTC AGGCCCCGTTTGAGGCGCCCCTGGTAAACCCTCTTGGGTACGCCTTGGAC AGTGTGGTGGTGCTCGATCTCGATGCACGTCCGGCGTCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig48140:190..2578-

>mRNA_H-elongata_contig48140.11955.1 ID=mRNA_H-elongata_contig48140.11955.1|Name=mRNA_H-elongata_contig48140.11955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig48140:190..2578- (Himanthalia elongata Himel1 dioecious)
CAGGTTTCCATTCATTGCCCGGCGTTTCTTCGTGCCCCTTTGGAGGTGAC
CTCCGCCCCGCTGGAGGCGTGGGCCACCGCGGTGCTGTTCGCTTCTGTTC
CGGAGGCGACAATACTACGCGCGGTCGACGTACTTCTGCTGGAAAAAACG
CTCGTGGTCTGCGGCAGGGACATCGGCATGCAGGTTTCCATTCATTGCCC
GGCGTTTCTTCGTGCCCCTTTGGAGGTGACCTCCGCCCCGCTGGAGGCGT
GGGCCACCGCGGTGCTGTTCGCTTCTGTTCCGGAGGCGACAATACTACGC
GCGGTCGACGTACTTCTGCTGGAAAAAACGCTCGTGGTCTGCGGCAGGGA
CATCGGCATGGTTTCCATAACTGCCACGGCCCTCCTGTCGCTGCTGGATC
CTTTCAAGGTTTCCATAACTGCCACGGCCCTCCTGTCGCTGCTGGATCCT
TTCAAGTGGGAAGGCGTTTTTGTACCCGTGGTGCCTCTCAAGATGATGGA
CGTGCTGGACAGCCCGGTGCCGGCCCTTGTAGGCGTTCAGGCCCCGTTTG
AGGCGCCCCTGGTAAACCCTCTTGGGTACGCCTTGGACAGTGTGGTGGTG
CTCGATCTCGATGCACGTCCGGCGTCGTGGGAAGGCGTTTTTGTACCCGT
GGTGCCTCTCAAGATGATGGACGTGCTGGACAGCCCGGTGCCGGCCCTTG
TAGGCGTTCAGGCCCCGTTTGAGGCGCCCCTGGTAAACCCTCTTGGGTAC
GCCTTGGACAGTGTGGTGGTGCTCGATCTCGATGCACGTCCGGCGTCG
back to top