mRNA_H-elongata_contig48026.11939.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48026.11939.1
Unique NamemRNA_H-elongata_contig48026.11939.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48026.11939.1 vs. uniprot
Match: A0A6H5JGM0_9PHAE (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGM0_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.920e-34
Identity = 73/118 (61.86%), Postives = 88/118 (74.58%), Query Frame = 3 
Query:   54 MGN-VVGGRESI-DDEAACGIFDFERCFGASLEDASPGVIREPLQGYVPSTGPPTTVRRGSVDTINEPLVGRLVTVHMMETNLILRETVGVVDQTVTSMPYTAIRRLTWDHSQSSLKL 401
            MGN VVG RESI DD    GI DFE CF AS ED +  ++ +PL GY  STGPP T RRGS + I+EPL GRL+TVHMM+T L+L+E VGVV+Q + S+PY AIR LTWDH+ SSLK+
Sbjct:    1 MGNIVVGDRESIGDDGDVDGISDFEHCFAASCEDCTDNLLPQPLPGYTSSTGPPETRRRGSKENIHEPLKGRLMTVHMMKTELLLKEAVGVVEQNLLSIPYGAIRVLTWDHAASSLKV 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48026.11939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGM0_9PHAE3.920e-3461.86PH domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48026contigH-elongata_contig48026:2530..2930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog2880.D8LG12
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs2CETD@1,2S3H4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size403
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930791.9473078-UTR-H-elongata_contig48026:2529..25821622930791.9473078-UTR-H-elongata_contig48026:2529..2582Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48026 2530..2582 +
1691679572.228219-UTR-H-elongata_contig48026:2529..25821691679572.228219-UTR-H-elongata_contig48026:2529..2582Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48026 2530..2582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930791.9723976-CDS-H-elongata_contig48026:2582..29301622930791.9723976-CDS-H-elongata_contig48026:2582..2930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48026 2583..2930 +
1691679572.238935-CDS-H-elongata_contig48026:2582..29301691679572.238935-CDS-H-elongata_contig48026:2582..2930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48026 2583..2930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48026.11939.1prot_H-elongata_contig48026.11939.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48026 2583..2930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48026.11939.1

>prot_H-elongata_contig48026.11939.1 ID=prot_H-elongata_contig48026.11939.1|Name=mRNA_H-elongata_contig48026.11939.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MGNVVGGRESIDDEAACGIFDFERCFGASLEDASPGVIREPLQGYVPSTG
PPTTVRRGSVDTINEPLVGRLVTVHMMETNLILRETVGVVDQTVTSMPYT
AIRRLTWDHSQSSLKL
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mRNA from alignment at H-elongata_contig48026:2530..2930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48026.11939.1 ID=mRNA_H-elongata_contig48026.11939.1|Name=mRNA_H-elongata_contig48026.11939.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=401bp|location=Sequence derived from alignment at H-elongata_contig48026:2530..2930+ (Himanthalia elongata Himel1 dioecious)
CTCCACCAGATTCGCTTCGTTCTTCAGTCAATAGCTAAGACATACCTGCC
GTCATGGGTAATGTGGTCGGCGGTCGTGAAAGCATCGACGACGAAGCTGC
GTGTGGAATTTTTGACTTCGAGCGCTGTTTCGGCGCGTCCCTTGAGGATG
CATCACCTGGGGTTATTCGCGAGCCGCTCCAAGGCTATGTCCCATCGACA
GGTCCACCGACCACAGTTCGGAGAGGATCTGTAGACACCATCAATGAGCC
CCTCGTCGGTCGTCTCGTAACGGTGCATATGATGGAGACGAATCTAATTC
TGAGGGAGACAGTAGGCGTGGTGGATCAAACTGTGACCTCCATGCCTTAC
ACAGCAATCCGCCGGCTTACCTGGGACCACTCGCAATCTAGCCTTAAGCT
C
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Coding sequence (CDS) from alignment at H-elongata_contig48026:2530..2930+

>mRNA_H-elongata_contig48026.11939.1 ID=mRNA_H-elongata_contig48026.11939.1|Name=mRNA_H-elongata_contig48026.11939.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig48026:2530..2930+ (Himanthalia elongata Himel1 dioecious)
ATGGGTAATGTGGTCGGCGGTCGTGAAAGCATCGACGACGAAGCTGCGTG
TGGAATTTTTGACTTCGAGCGCTGTTTCGGCGCGTCCCTTGAGGATGCAT
CACCTGGGGTTATTCGCGAGCCGCTCCAAGGCTATGTCCCATCGACAGGT
CCACCGACCACAGTTCGGAGAGGATCTGTAGACACCATCAATGAGCCCCT
CGTCGGTCGTCTCGTAACGGTGCATATGATGGAGACGAATCTAATTCTGA
GGGAGACAGTAGGCGTGGTGGATCAAACTGTGACCTCCATGCCTTACACA
GCAATCCGCCGGCTTACCTGGGACCACTCGCAATCTAGCCTTAAGCTCAT
GGGTAATGTGGTCGGCGGTCGTGAAAGCATCGACGACGAAGCTGCGTGTG
GAATTTTTGACTTCGAGCGCTGTTTCGGCGCGTCCCTTGAGGATGCATCA
CCTGGGGTTATTCGCGAGCCGCTCCAAGGCTATGTCCCATCGACAGGTCC
ACCGACCACAGTTCGGAGAGGATCTGTAGACACCATCAATGAGCCCCTCG
TCGGTCGTCTCGTAACGGTGCATATGATGGAGACGAATCTAATTCTGAGG
GAGACAGTAGGCGTGGTGGATCAAACTGTGACCTCCATGCCTTACACAGC
AATCCGCCGGCTTACCTGGGACCACTCGCAATCTAGCCTTAAGCTC
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