mRNA_H-elongata_contig47876.11925.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47876.11925.1
Unique NamemRNA_H-elongata_contig47876.11925.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47876.11925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47876contigH-elongata_contig47876:2175..2813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size628
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47876.11925.1prot_H-elongata_contig47876.11925.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47876 2175..2557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.128239-CDS-H-elongata_contig47876:2174..24241622930790.128239-CDS-H-elongata_contig47876:2174..2424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47876 2175..2424 +
1691679571.3476949-CDS-H-elongata_contig47876:2174..24241691679571.3476949-CDS-H-elongata_contig47876:2174..2424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47876 2175..2424 +
1622930790.1444705-CDS-H-elongata_contig47876:2435..25571622930790.1444705-CDS-H-elongata_contig47876:2435..2557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47876 2436..2557 +
1691679571.3568435-CDS-H-elongata_contig47876:2435..25571691679571.3568435-CDS-H-elongata_contig47876:2435..2557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47876 2436..2557 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.155589-UTR-H-elongata_contig47876:2557..28131622930790.155589-UTR-H-elongata_contig47876:2557..2813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47876 2558..2813 +
1691679571.3643713-UTR-H-elongata_contig47876:2557..28131691679571.3643713-UTR-H-elongata_contig47876:2557..2813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47876 2558..2813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47876.11925.1

>prot_H-elongata_contig47876.11925.1 ID=prot_H-elongata_contig47876.11925.1|Name=mRNA_H-elongata_contig47876.11925.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
RVCSVGYVPRYTAGISAGIYPTERLGTLGIDLYTLPKISVLPVQPSIPYR
NSVRSVQPSIPYRKYPYPTEHTLGNYHWGIKIYRQCEDNEGADARWDNRT
RLARPHSQARTERGEIARVCSVR*
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mRNA from alignment at H-elongata_contig47876:2175..2813+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47876.11925.1 ID=mRNA_H-elongata_contig47876.11925.1|Name=mRNA_H-elongata_contig47876.11925.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=639bp|location=Sequence derived from alignment at H-elongata_contig47876:2175..2813+ (Himanthalia elongata Himel1 dioecious)
AGGGTGTGTTCGGTAGGGTACGTACCAAGGTATACCGCCGGTATTTCCGC
CGGTATATACCCTACCGAGCGTCTCGGTACGCTCGGTATAGACCTCTATA
CCCTACCGAAAATCTCGGTACTCCCGGTACAGCCCTCTATACCCTACCGA
AACTCGGTACGCTCGGTACAGCCCTCCATACCCTACCGAAAATACCCGTA
CCCTACCGAACACACCCTTGGTAATTATCACTGGGGGATAAAAATATACA
GCCTACGTGAGGACAATGTGAGGACAATGAGGGGGCTGACGCGAGATGGG
ACAACCGAACCCGCCTCGCGAGACCACATTCTCAGGCGCGAACGGAGAGA
GGGGAAATTGCAAGGGTGTGTTCGGTACGGTGAATACCGAGGCGTATCGG
CGGTATAAAAAAAAAAAATACACACACACACACACACACACACACACAAA
CACATAACTATCGACTAATCACTGGAGGTAAATATCATCGAGCAATGACT
AGGGAATACAAATGACAAATAATCACTGAATATTAATATGATGCGGTAAT
CGCTATCGAGTAATCGATGGGGGAGTTACTGTCGAGCGCCGCACGGAAAT
ACTGCGATTTATTTCCTACCCCTGGTGGTGATGCTTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig47876:2175..2813+

>mRNA_H-elongata_contig47876.11925.1 ID=mRNA_H-elongata_contig47876.11925.1|Name=mRNA_H-elongata_contig47876.11925.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig47876:2175..2813+ (Himanthalia elongata Himel1 dioecious)
AGGGTGTGTTCGGTAGGGTACGTACCAAGGTATACCGCCGGTATTTCCGC
CGGTATATACCCTACCGAGCGTCTCGGTACGCTCGGTATAGACCTCTATA
CCCTACCGAAAATCTCGGTACTCCCGGTACAGCCCTCTATACCCTACCGA
AACTCGGTACGCTCGGTACAGCCCTCCATACCCTACCGAAAATACCCGTA
CCCTACCGAACACACCCTTGGTAATTATCACTGGGGGATAAAAATATACA
AGGGTGTGTTCGGTAGGGTACGTACCAAGGTATACCGCCGGTATTTCCGC
CGGTATATACCCTACCGAGCGTCTCGGTACGCTCGGTATAGACCTCTATA
CCCTACCGAAAATCTCGGTACTCCCGGTACAGCCCTCTATACCCTACCGA
AACTCGGTACGCTCGGTACAGCCCTCCATACCCTACCGAAAATACCCGTA
CCCTACCGAACACACCCTTGGTAATTATCACTGGGGGATAAAAATATACA
GACAATGTGAGGACAATGAGGGGGCTGACGCGAGATGGGACAACCGAACC
CGCCTCGCGAGACCACATTCTCAGGCGCGAACGGAGAGAGGGGAAATTGC
AAGGGTGTGTTCGGTACGGTGAGACAATGTGAGGACAATGAGGGGGCTGA
CGCGAGATGGGACAACCGAACCCGCCTCGCGAGACCACATTCTCAGGCGC
GAACGGAGAGAGGGGAAATTGCAAGGGTGTGTTCGGTACGGTGA
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