prot_H-elongata_contig4785.11923.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4785.11923.1
Unique Nameprot_H-elongata_contig4785.11923.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
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BLAST of mRNA_H-elongata_contig4785.11923.1 vs. uniprot
Match: A0A6H5KV73_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV73_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.640e-23
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:   25 MLPCNHSLCRGCAMQAMRQYRRCPQCLADIPNLRALQGRNKWITSMVESLRDCLNEVGVSLTQH 88
            MLPCNH LCRGCA Q  ++ +RCPQC+  IPNLR LQGRNKWI  MV+ L++ +N+VGVSLTQH
Sbjct:    1 MLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQH 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4785.11923.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV73_9PHAE6.640e-2367.19BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 16..87
e-value: 5.5E-12
score: 47.5
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 19..50
e-value: 2.3E-8
score: 33.7
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 20..65
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 28..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4785contigH-elongata_contig4785:11546..11809 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4785.11923.1mRNA_H-elongata_contig4785.11923.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4785 11546..11809 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4785.11923.1 ID=prot_H-elongata_contig4785.11923.1|Name=mRNA_H-elongata_contig4785.11923.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
TSALDDASSSVPHLLMTSILEDPVMLPCNHSLCRGCAMQAMRQYRRCPQC
LADIPNLRALQGRNKWITSMVESLRDCLNEVGVSLTQH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS