mRNA_H-elongata_contig4759.11892.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4759.11892.1
Unique NamemRNA_H-elongata_contig4759.11892.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig4759.11892.1 vs. uniprot
Match: D7G3E1_ECTSI (Similar to camp and camp-inhibited cgmp 3,5-cyclic phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E1_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 1.390e-94
Identity = 204/386 (52.85%), Postives = 257/386 (66.58%), Query Frame = 1 
Query:   19 ARSETDGALKQKKLNNIRRKKSVVGAHAPAV--FKPPKSLRRIADSSIKLNGNRFPFCVECPQGSRGIDSQDALARKSSLSTSSFDPARQAKIKDAQTKRQRAMEYGNNAFKATSREGDLKELNKQILAEFVSTLGCERATLMLIDRPSQEIFFFDGPMRVAFPLKAGIAGRCASTGIGMVVNDPYSHPQFNPKAMYTTGFRTRNILCEPIKKSRRGGDVVAVLEMLNKKDGQSFTEQDSAVMEMCTVKVANALDTTFGALVLAEKEWSKVAGRRRXXXXXXXXXXXXXXXXXXXAQASRMLLNTIWWKSLCDKYADLEPGDGW----KGSLSRRR-SSTVSWDEYNDAGELDESFSGPQISNRRGSGSSTTDTAKLKRRTDYGKE 1155
            +R+E DG +KQK+L+ IRR+ S VG   P +  F P +  R    +S   +       V   + S    +     R+ SLS +  D ARQA+I +A+ KRQRA+EYGN+A KAT+REG LK+L KQILA+FVST+GC+RATLM +D P+QE+FFFDG MR+AFPL+ GIAG  A+TG+G+VVNDPY++ +FN +    +GF TRNILCEPIK SR+GG+VVAVL+M+NKKDG+ F+E D+ VMEMC VKVA ALDT+F ALV AE EW+K AGRR XXXXXXXXXXXXXXXXXXX                                 +GSL  RR S+T+S    +   E+      PQISNRRGSG+S  D  KLKRRT+YGKE
Sbjct:  176 SRAEADGGVKQKQLDTIRRRISNVGTQPPELKPFNPAEFAREQNQASSNDSS-----LVGSKESSDTNGASKGAGRRESLSPNVHDKARQARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQILADFVSTIGCDRATLMFVDTPAQELFFFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNERFNRQVDKDSGFVTRNILCEPIK-SRKGGNVVAVLQMVNKKDGEDFSEHDAGVMEMCAVKVALALDTSFAALVSAENEWAKAAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGSLGGRRGSATLSGLGDDGLQEV------PQISNRRGSGTSKADVEKLKRRTEYGKE 549
[Close]
BLAST of mRNA_H-elongata_contig4759.11892.1 vs. uniprot
Match: A0A835ZCA7_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA7_9STRA)

HSP 1 Score: 187 bits (475), Expect = 9.860e-51
Identity = 112/293 (38.23%), Postives = 164/293 (55.97%), Query Frame = 1 
Query:  310 RQRAMEYGNNAFKATSREGDLKELNKQILAEFVSTLGCERATLMLIDRPSQEIFFFDGPMRVAFPLKAGIAGRCASTGIGMVVNDPYSHPQFNPKAMYTTGFRTRNILCEPIKKSRRGGDVVAVLEMLNKKDGQSFTEQDSAVMEMCTVKVANALDTTFGALVLAEKEWSKVAGRRRXXXXXXXXXXXXXXXXXXXAQASRMLLNTIWWKSLCDKYADL---EPGDGWKGSLSRRRSSTVSWDEYNDAGELDESFSGPQISNRRGSGSSTTDTAKLKRRTDYGKEVRDSAVGL 1179
            RQRA EYGN A K+ + E  LKEL + +L +   T+ CE+AT+M +D+ ++ +FF+DG   + FP+  G+AG CA+TG  ++VNDPYS P+FN      TGF TRNILCEPI+ SR GG ++AVL+M+NK+ G+ FTEQDS VMEM  + V+ AL+  F AL+  + EW+    RR                     Q  R  + ++   +L ++Y D     P DG  G            ++ N  G  D +    ++S++    +   + A+ +RR DY   VR SA+GL
Sbjct:  249 RQRAQEYGNKALKSNTLENQLKELKRTLLQQLCDTMSCEKATIMFLDQHNEVLFFYDGDTCIRFPMSKGVAGYCATTGERLLVNDPYSDPRFNQAIDKQTGFVTRNILCEPIR-SRMGGALLAVLQMINKRGGEGFTEQDSEVMEMAVLNVSEALENRFRALISHQSEWAGTKARRNSAGPAAPSTAL---------QRRRHCIASLRLLTL-NRYLDHLKGAPPDGLMG------------EQVNQFGYRDGAQGASRLSSK--GTADAAEAARARRRKDYADGVRHSAIGL 516
[Close]
BLAST of mRNA_H-elongata_contig4759.11892.1 vs. uniprot
Match: A0A6H5JRH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH4_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.080e-39
Identity = 77/142 (54.23%), Postives = 99/142 (69.72%), Query Frame = 1 
Query:  238 RKSSLSTSSFDPARQAKIKDAQTKRQRAMEYGNNAFKATSREGDLKELNKQ-------------------------ILAEFVSTLGCERATLMLIDRPSQEIFFFDGPMRVAFPLKAGIAGRCASTGIGMVVNDPYSHPQFN 588
            R+ SLS +  D ARQA+I +A+ KRQRA+EYGN+A KAT+REG LK+L KQ                         ILA+FVST+GC+RATLM +D P+QE+FFFDG MR+AFPL+ GIAG  A+TG+G+VVNDPY++  FN
Sbjct:    9 RRESLSPNVHDKARQARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQVGQQQTLHGDSICCRSWNARSCVFVILADFVSTIGCDRATLMFVDTPAQELFFFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFN 150
[Close]
BLAST of mRNA_H-elongata_contig4759.11892.1 vs. uniprot
Match: A0A7S4D805_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D805_HETAK)

HSP 1 Score: 131 bits (330), Expect = 1.860e-32
Identity = 76/199 (38.19%), Postives = 114/199 (57.29%), Query Frame = 1 
Query:  226 DALARKSSLSTSSFDPARQAKIKDAQTKRQRAMEYGNNAFKATSREGDLKELNKQILAEFVSTLGCERATLMLIDRPSQEIFFFD-GPMRVAFPLKAGIAGRCASTGIGMVVNDPYSHPQFNPKAMYTTGFRTRNILCEPIKKSRRGGDVVAVLEMLNKKDGQSFTEQDSAVMEMCTVKVANALDTTFGALVLAEKEWS 819
            +A   +SSL + S     Q ++ +AQ  RQ+A +YG+ A +    + DL  + +++L  F   + CERA+LM +D   +EIFFFD    +  FP  AGIAG   STG  + + D YS P+FN +    TGF TRNILC PI+     G +VAV++MLNK+D   F+  D  ++E C   VA  L   +  L+ A ++++
Sbjct:    6 NAAGGRSSLRSLSSTVRSQGELTEAQKARQKARDYGDAALRQERVKKDLLAIRQRVLGRFQQIINCERASLMFVDDRRKEIFFFDESDHQRRFPSSAGIAGHVVSTGERLNIPDAYSDPRFNREMDKLTGFHTRNILCAPIRTYT--GQIVAVVQMLNKRDEDHFSHNDEGIIEACGTDVAEVLAPKYRDLLEAMEDFA 202
[Close]
BLAST of mRNA_H-elongata_contig4759.11892.1 vs. uniprot
Match: A0A7S2LDR6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDR6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.740e-29
Identity = 66/173 (38.15%), Postives = 103/173 (59.54%), Query Frame = 1 
Query:  310 RQRAMEYGNNAFKATSREGDLKELNKQILAEFVSTLGCERATLMLIDRPSQEIFFFDGPM-RVAFPLKAGIAGRCASTGIGMVVNDPYSHPQFNPKAMYTTGFRTRNILCEPIKKSRRGGDVVAVLEMLNKKDGQSFTEQDSAVMEMCTVKVANALDTTFGALVLAEKEWSKV 825
            R+ A+ YG +A +    E +L +L K+ +  F  T+ CER +++  DR   E+FFFD  + R +  L+ GIAG  A  G    V+D Y   +FN      TGFRT+++LC PIK +R G  ++AV++MLNKK G+SFT+ D  +M  C+ KVA AL+     +  A+ + +++
Sbjct:   41 RELALHYGESAQRTACAELNLNKLGKRAMNSFKKTIACERCSILFCDRDKNELFFFDDKLVRFSLSLELGIAGYVAKHGEIANVSDVYVDSRFNKNLDEQTGFRTKSLLCAPIK-NRSGDCIIAVIQMLNKKGGESFTDHDEDLMRNCSFKVAEALELQADVVARAQADMTRL 212
[Close]
BLAST of mRNA_H-elongata_contig4759.11892.1 vs. uniprot
Match: A0A7S3MBA7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBA7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.120e-18
Identity = 59/174 (33.91%), Postives = 91/174 (52.30%), Query Frame = 1 
Query:  310 RQRAMEYGNNAFKATSREGDLKELNKQILAEFVSTLGCERATLMLIDRPSQEIFFFDGPMR-VAFPLKAGIAGRCASTGIGMVVNDPYSHPQFNPKAMYTTGFRTRNILCEPIKKSRRGGDVVAVLEMLNKK----DGQS-FTEQDSAVMEMCTVKVANALDTTFGAL-VLAEK 810
            R RA+ YGN A +      +L  L  ++L +F  T+ CE A+L   +  +QE+   +   +    P   GI G C  TG  + + + Y   +FN      TGF+TR+ILC+P++  R GG ++ V++MLNKK    DG+  F   D  ++   + +VA+ L   F  L  LAEK
Sbjct:  107 RARAVMYGNMALEYDMMLTNLNLLQTEVLNQFKETINCEVASLFFANHRTQELLLCNSDSKWYRVPFGVGICGYCMETGENVNIPNAYEDHRFNKNMDLKTGFKTRSILCQPVRGMRGGGQIIGVIQMLNKKGPGTDGEGVFDAHDEELLTNFSSRVADMLSVKFADLNALAEK 280
[Close]
BLAST of mRNA_H-elongata_contig4759.11892.1 vs. uniprot
Match: A0A7V2Y7X5_9DELT (GAF domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V2Y7X5_9DELT)

HSP 1 Score: 95.5 bits (236), Expect = 3.940e-18
Identity = 53/140 (37.86%), Postives = 83/140 (59.29%), Query Frame = 1 
Query:  367 DLKELNKQILAEFVSTLGCERATLMLIDRPSQEI--FFFDGPMRVAFPLKAGIAGRCASTGIGMVVNDPYSHPQFNPKAMYTTGFRTRNILCEPIKKSRRGGDVVAVLEMLNKKDGQSFTEQDSAVMEMCTVKVANALDT 780
            DLK + +++  E    L  ER+++ L+D  S+E+         ++ F  + GIAGR  +TG+ M++ D Y+ P+FNP+    TGFRTR+IL  P+K     G V+ V E+LN+KDG  F E+D A++E      A A++T
Sbjct:   26 DLKSVLERVWKELTRVLEAERSSIFLLDEESKELQSVVAQEANQIRFHRQKGIAGRVLATGLPMLIPDAYADPRFNPEIDRITGFRTRSILAVPMKGP--SGSVLGVAEVLNRKDGNPFDEEDLALLEALAGIAAVAIET 163
[Close]
BLAST of mRNA_H-elongata_contig4759.11892.1 vs. uniprot
Match: K1Q9Q8_CRAGI (Phosphodiesterase n=7 Tax=Crassostrea gigas TaxID=29159 RepID=K1Q9Q8_CRAGI)

HSP 1 Score: 95.5 bits (236), Expect = 1.980e-17
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 1 
Query:  361 EGDLKELNKQILAEFVSTLGCERATLMLIDRPSQEIF--FFDGPM--------RVAFPLKAGIAGRCASTGIGMVVNDPYSHPQFNPKAMYTTGFRTRNILCEPIKKSRRGGDVVAVLEMLNKKDGQSFTEQD----SAVMEMCTVKVANAL 774
            + DL +L ++I+ E  +    ER ++ LID+ ++E+    FDG           +  P+  GIAG  A+TG  + + D YSHP F      +TGFRTRNILC PIK  R  GDV+ V ++ NKK GQ FTE D    SA    C + ++++L
Sbjct: 1101 KNDLTKLLREIMQEARNLTQAERCSVFLIDKETKELVAEVFDGISTNNKEEHNEIRMPITQGIAGHVATTGNLLNIKDAYSHPMFYRGIDDSTGFRTRNILCFPIKNER--GDVLGVAQLCNKKTGQHFTEFDEDLASAFAVYCCISISHSL 1250
[Close]
BLAST of mRNA_H-elongata_contig4759.11892.1 vs. uniprot
Match: A0A6H5JRT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT3_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.130e-17
Identity = 63/141 (44.68%), Postives = 72/141 (51.06%), Query Frame = 1 
Query:  739 MEMCTVKVANALDTTFGALVLAEKEWSKVAGRRRXXXXXXXXXXXXXXXXXXXAQASRMLLNTIWWKSLCDKYADLEPGDGWKGSLSRRR-SSTVSWDEYNDAGELDESFSGPQISNRRGSGSSTTDTAKLKRRTDYGKEV 1158
            MEMC VKVA ALDT+F ALV AE EW+K AGRRR                                    D  AD   G G +GSL  RR S+T+S     D G  +     PQISNRRGSG+S  D  KLKRRT+YGKE+
Sbjct:    1 MEMCAVKVALALDTSFAALVAAENEWAKAAGRRRSSGSGSIDDSEPVLTAAEAXXXXXXXXXXXXXXXXSDG-ADATAGGGRRGSLGGRRGSATLSG--LGDGGLQEVGARVPQISNRRGSGTSKADVEKLKRRTEYGKEL 138
[Close]
BLAST of mRNA_H-elongata_contig4759.11892.1 vs. uniprot
Match: A0A8B8D7D4_CRAVI (Phosphodiesterase n=8 Tax=Crassostrea TaxID=6564 RepID=A0A8B8D7D4_CRAVI)

HSP 1 Score: 93.6 bits (231), Expect = 7.020e-17
Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 1 
Query:  367 DLKELNKQILAEFVSTLGCERATLMLIDRPSQEIF--FFDGPM--------RVAFPLKAGIAGRCASTGIGMVVNDPYSHPQFNPKAMYTTGFRTRNILCEPIKKSRRGGDVVAVLEMLNKKDGQSFTEQD----SAVMEMCTVKVANAL 774
            DL +L ++I+ E  +    ER ++ LID+ ++E+    FDG           +  P+  GIAG  A+TG  + + D YSHP F      +TGFRTRNILC PIK  +  GDV+ V ++ NKK GQ FTE D    SA    C + +++ L
Sbjct:  358 DLTKLLREIMQEARNLTQAERCSVFLIDKETKELVAEVFDGISTNNKEEHNEIRMPITQGIAGHVATTGNLLNIKDAYSHPMFYRGIDDSTGFRTRNILCFPIKNEK--GDVLGVAQLCNKKTGQHFTEFDEDLASAFAVYCCISISHCL 505
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4759.11892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E1_ECTSI1.390e-9452.85Similar to camp and camp-inhibited cgmp 3,5-cyclic... [more]
A0A835ZCA7_9STRA9.860e-5138.23SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JRH4_9PHAE1.080e-3954.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4D805_HETAK1.860e-3238.19Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2LDR6_9STRA2.740e-2938.15Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3MBA7_9STRA1.120e-1833.91Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7V2Y7X5_9DELT3.940e-1837.86GAF domain-containing protein n=1 Tax=Deltaproteob... [more]
K1Q9Q8_CRAGI1.980e-1738.82Phosphodiesterase n=7 Tax=Crassostrea gigas TaxID=... [more]
A0A6H5JRT3_9PHAE2.130e-1744.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8B8D7D4_CRAVI7.020e-1738.67Phosphodiesterase n=8 Tax=Crassostrea TaxID=6564 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4759contigH-elongata_contig4759:2852..8633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.8
Seed ortholog evalue7.5e-81
Seed eggNOG ortholog2880.D7G3E1
KEGG rclassRC00296
KEGG koko:K13293
KEGG ReactionR00191
KEGG Pathwayko00230,ko04024,ko05032,map00230,map04024,map05032
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
Ec32 orthologEc-09_001160.1
EC3.1.4.53
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGAF domain
Ec32 orthologEc-09_001160.2
Exons10
Model size1185
Cds size1185
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4759.11892.1prot_H-elongata_contig4759.11892.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4759 2852..8633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.4146059-CDS-H-elongata_contig4759:2851..28811622930786.4146059-CDS-H-elongata_contig4759:2851..2881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 2852..2881 -
1691679569.6731448-CDS-H-elongata_contig4759:2851..28811691679569.6731448-CDS-H-elongata_contig4759:2851..2881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 2852..2881 -
1622930786.4288878-CDS-H-elongata_contig4759:3212..33171622930786.4288878-CDS-H-elongata_contig4759:3212..3317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 3213..3317 -
1691679569.6866882-CDS-H-elongata_contig4759:3212..33171691679569.6866882-CDS-H-elongata_contig4759:3212..3317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 3213..3317 -
1622930786.4542763-CDS-H-elongata_contig4759:3577..36701622930786.4542763-CDS-H-elongata_contig4759:3577..3670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 3578..3670 -
1691679569.7019289-CDS-H-elongata_contig4759:3577..36701691679569.7019289-CDS-H-elongata_contig4759:3577..3670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 3578..3670 -
1622930786.4675539-CDS-H-elongata_contig4759:4700..49311622930786.4675539-CDS-H-elongata_contig4759:4700..4931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 4701..4931 -
1691679569.7217941-CDS-H-elongata_contig4759:4700..49311691679569.7217941-CDS-H-elongata_contig4759:4700..4931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 4701..4931 -
1622930786.4826238-CDS-H-elongata_contig4759:5225..53031622930786.4826238-CDS-H-elongata_contig4759:5225..5303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 5226..5303 -
1691679569.7332578-CDS-H-elongata_contig4759:5225..53031691679569.7332578-CDS-H-elongata_contig4759:5225..5303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 5226..5303 -
1622930786.4985538-CDS-H-elongata_contig4759:6031..60751622930786.4985538-CDS-H-elongata_contig4759:6031..6075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 6032..6075 -
1691679569.7469022-CDS-H-elongata_contig4759:6031..60751691679569.7469022-CDS-H-elongata_contig4759:6031..6075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 6032..6075 -
1622930786.517896-CDS-H-elongata_contig4759:6582..67241622930786.517896-CDS-H-elongata_contig4759:6582..6724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 6583..6724 -
1691679569.7596543-CDS-H-elongata_contig4759:6582..67241691679569.7596543-CDS-H-elongata_contig4759:6582..6724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 6583..6724 -
1622930786.534779-CDS-H-elongata_contig4759:6965..70371622930786.534779-CDS-H-elongata_contig4759:6965..7037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 6966..7037 -
1691679569.7684333-CDS-H-elongata_contig4759:6965..70371691679569.7684333-CDS-H-elongata_contig4759:6965..7037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 6966..7037 -
1622930786.5476255-CDS-H-elongata_contig4759:7336..76001622930786.5476255-CDS-H-elongata_contig4759:7336..7600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 7337..7600 -
1691679569.7765083-CDS-H-elongata_contig4759:7336..76001691679569.7765083-CDS-H-elongata_contig4759:7336..7600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 7337..7600 -
1622930786.560115-CDS-H-elongata_contig4759:8507..86331622930786.560115-CDS-H-elongata_contig4759:8507..8633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 8508..8633 -
1691679569.7854478-CDS-H-elongata_contig4759:8507..86331691679569.7854478-CDS-H-elongata_contig4759:8507..8633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 8508..8633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4759.11892.1

>prot_H-elongata_contig4759.11892.1 ID=prot_H-elongata_contig4759.11892.1|Name=mRNA_H-elongata_contig4759.11892.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=395bp
MPLTRQARSETDGALKQKKLNNIRRKKSVVGAHAPAVFKPPKSLRRIADS
SIKLNGNRFPFCVECPQGSRGIDSQDALARKSSLSTSSFDPARQAKIKDA
QTKRQRAMEYGNNAFKATSREGDLKELNKQILAEFVSTLGCERATLMLID
RPSQEIFFFDGPMRVAFPLKAGIAGRCASTGIGMVVNDPYSHPQFNPKAM
YTTGFRTRNILCEPIKKSRRGGDVVAVLEMLNKKDGQSFTEQDSAVMEMC
TVKVANALDTTFGALVLAEKEWSKVAGRRRSSAGVVLLNTAEAAAAAATA
QASRMLLNTIWWKSLCDKYADLEPGDGWKGSLSRRRSSTVSWDEYNDAGE
LDESFSGPQISNRRGSGSSTTDTAKLKRRTDYGKEVRDSAVGLV*
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mRNA from alignment at H-elongata_contig4759:2852..8633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4759.11892.1 ID=mRNA_H-elongata_contig4759.11892.1|Name=mRNA_H-elongata_contig4759.11892.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5782bp|location=Sequence derived from alignment at H-elongata_contig4759:2852..8633- (Himanthalia elongata Himel1 dioecious)
ATGCCCTTGACGCGACAGGCCCGTTCCGAGACTGACGGCGCTTTGAAACA
AAAGAAGCTTAACAATATTCGACGGAAGAAATCTGTGGTTGGGGCTCACG
CCCCAGCCGTTTTTAAGCCTCCAAAGGTCCGCGAATGTCCCTAAATGGTA
TACGGTTATTTCCGTGTAGAGTGTTGTAGATTATATCGACATGCGTCCGT
GCTCCAATGGAAACGCGTGAGAGGCTCAGTGCTTGTGCATAGCCACTCTC
GACAAACGCTTCGGATACACGAGGGGATCGTTATTGCTTCGGTAAGGGCT
GGAAGAACCGTGGGTATTCTCAATAGCGTAACTCGCGACGAGGGGGAAGT
CATGATATATCCACCCCCGTCCCGTCCCCCGTGGTAGGCCAAGTTGGAGT
GACGTGCTCGTGAATCGGTGAAGCATGTAGAGTCAGAGATGGTGGACACG
ATGGACTTGCACAAATCATTTATTGAGGAGAGTGAGACTCATTCGAGACG
CGACTTCTCCGCCTAAACATTTTCTCGTGCACCAAACCGGCCATCGAGGC
CCCACAGAGCGTTCCCTTTGATTAATCGGTACATGTAAACCTTACCGCTG
GGCTATCGCTCGCGGTGCTGTTTCCCTCTTGATCCAGACCAGTGAAATCG
GGCGCGGTGCAAGCGGTGACAGTGCTGGGGTGAACATTCATTCCGTGTCA
GCGGTGAGGAAGTACGCCGAGGTCGAATAAGACAAAAAAACTGTCTAAAT
ATAAGCGTCGTAGCTCAAAGATCCCGCGAAAAGGGCAGCAGTTGTTGGTT
GTTGGAGTCAGGCTCGATCTAAGTTTACCTTACAAAATTTCCACCTTACA
TCCATTACTCGAACATCCTACGTGCCCTCGGGCACGTGTTCCGGTTCGAG
GGCTAAAAAGGGATCTTGGGCGTAAGCGGACTGCATCGATTTTTCCTCGT
AAGAGAAAAATTACGTTGAGTACCTTACGTGGTTGACCCCCTTCGTCGAG
ATATTGAACGTTAAGGGCAGCATCTCTACTGAGTCTTTGCGCCGCATTGC
GGACTCTTCGATCAAACTCAACGGGAATCGTTTCCCTTTCTGTGTTGAAT
GTCCCCAGGGAAGTAGGGGAATCGACAGTCAAGATGCCTTGGCGCGAAAA
AGTTCGCTGTCGACGAGCAGCTTTGATCCGGCTAGGCAGGCCAAGATCAA
GGATGCTCAGACAAAGAGGCAGAGGGCGATGGAGTATGGAAACAACGCGT
TCAAGGCCACAAGCCGAGAGGGAGATCTCAAAGAGCTCAATAAACAGGTA
GGGGGAAGGAGAGAAGGGAAAATATCCCGGAGATGGGCATCGGGGACGAC
GGTGTGCCGTACGGACGCGATGCGTGCTGGGAAGAACTCCGCAAGATTGT
GTCCTAACCCACCCACGAGTTCCGGATCAAGACACCGAAATAATAGGCAA
AAGGCGAATCGGGTCGTGTTGTAGGTACCCCGAGGGTCAGAGAGTGAACT
CCGTGGGACAAAGAGAAGACTCTCCTAGCCAACCTCACCCCTCCCGCGTG
TGGTCCGACATACGACGCGAACCCGTTGCTGTCGCTGCCGTATCAGATTC
TGGCGGAATTTGTCAGTACCTTGGGCTGCGAGCGCGCTACTTTAATGTTG
ATCGACAGGCCTTCCCAGGTGCGCACTGTTAGCAAGACACCGAATGCTGC
TTTGTTCTTTATGCCACGGGATACATGTGTGTGGATATTCTCAAACGTGT
TCTGCGGGTCTCAGACGTCCAGATCGTCCTACTGGAGATCCTTCGTTTGG
CAGCACCTTAAACGAGCTATCCTACCCCCCCGCCCCCTGTGTACAAGCGC
CTCCCATGCTCTCCACGACCCCCTGTATGTCTTCCCGACTGACTCGGTCT
GCTTCTCAGGAAATATTTTTCTTCGACGGGCCGATGCGCGTAGCCTTTCC
GCTGAAGGCGGGCATCGCTGGTCGTTGTGCTTCGACCGGGATCGGCATGG
TGGTCAACGATCCCTACTCTCATCCGCAATTCAACCCCAAGGCGATGTAC
AGTCTGGAGTGCGGCACACGTCCGATTTCGCCCTCCTGATATCGCTCACC
GGAAGACGTGCAGCACGTTGCTCTCTGAAGATAATAAACAAGAACACAAG
TAGTTTAGAGCACTTCCAGAGGGTTTTCCTTGGCTGTCGACGTTTTTTTT
TTTTTTTCGTGTCGCTTTCTCCCGCTGCAGGCATTCAACGTACACGAGGC
TGCCAACCCTGCCTGTATGCATCGCTTTTCATCCCGTTTATGGTCCGAAG
GGGCATTGAAAAGTGCCGGTCAAGCGCAGCGTACAGGACGCTACGAAGTC
TGTATTTCCCTAAGGATGAAGAATCCTGCTTACTGTCTTACTGCTTTTGA
TATTTCTACGGTAATGAGAGTTCGATCCTTGCCTCCCCAACCTGTGAGAC
ACACACAGACATATGATATACCTGGTATATATATATATATATATACACAC
ATAGCCATGTTCTTTATTAACAAGGCGGCGTACGCTTGCTCTCCTCAGAT
TGACCGAGCTACCGGTTTCCGCACAAGAAACATCCTCTGCGAGCCCATCA
AGGTGCGAACAATCGAGGCACAGCAGACTTGCGAAGTGTATCTCGATTTT
TGAAATCCCCGCGGTATAGTAAAATGAAACCGCCTTAGGCGTGACTGCAT
TATCACCGCAAGGCTTAAAAAATATATGAAATCCCCACCCGGGCACAAAG
CCCCCCGCATGACCGCGACAATCTTAAGAGATGGCGCAAGTCGAAAACGT
GGAGAATTCTGTTACCGTCAAGATCAAGATACATAGTCCGTGCAACCAAA
CGATACCCCGAAGAGGCCTCTAAACCGCACTATATACGATGGATGCGATA
TCTTGTTTCGGTCGGTCCTTATGAAAATCATGCCCCCCCCCCCCCCTCGC
GTCCTTTTTTTAGAATGTCCGTTGTAAATCGCGAACCTACCCATTCCCAA
CAGCAACACAANNNNNNNNNNGGATGGGATTTCTTGTTTCGGTCGGTCCT
TATGAAAATCATGCCCCCCCCCCCCCCCTTAGCTACATTTTTTAAGATGC
GCCGGCATACTACGAGAGTATACCCGTCTCCAAAAGCACTATAATGCTTC
AAAACGCGTGAAGTCTCCCCCTCCCCACCAAGCTCCCATACCTCCTCGTT
GAAATCGTATTGTCTATGACAACATGATGCCTTTATTGTTCCGAGACGCT
GACGACGATGCGCGTGTGCGCGCACCTATGCCGTGGCTTCCGGGAATTGG
CATTCCCGCGTCGCATTTTTGTCTGGCGAGAAGTCACGTAGAGGGGGTGA
TGTGGTTGCCGTTCTGGAGATGCTGAACAAAAAGGACGGCCAGAGCTTCA
CGGAGCAGGTGCGAGCACACGCTTATCGATCTCCATTTCGTTCTTACTCG
TCTAGCCGGCTGGGATAAAGCTGCCGCTTTGCTTGTTCGTGTGCGAATGC
TTCCGGCTCGGAAAGAGCGAGGAGGTGCCGAGTTAACCATAAACCCATCA
CGATCAGAGTGTCGGCACGTGTTCACGCGACACCCTCCACCCGCGCGCAC
GACGGTAGGGGCAAGCCATACACCCCCCTACTCCCACCCCCACCCCCCGA
CGTATGCAGAGTGTGCAAATACGACGTACATATCTGCGAAAATCCCGAAC
AGGATTCCGCCGTGATGGAAATGTGCACCGTAAAAGTGGCGAACGCCCTG
GACACAACATTTGGGGCGCTCGTCTTGGCAGAGAAAGAGTGGTCAAAGGT
TGCTGGCCGCCGCCGAAGCTCGGCCGGCGTGGTGCTGCTAAACACCGCAG
AGGCCGCAGCGGCCGCCGCCACAGCCCAGGCGAGTCGGATGTTGCTGAAC
ACGATCTGGTGGAAGAGCCTTTGTGATAAATATGTATTCTTCGTATCAAA
ATTATGAGCACACTCAAAACCCTCCGAACACTCGCACCTTGTTTACACCG
ATATCGAAGAAATTTCAGCAGACGTTATCGTTGAGTTCGACCGGGTACAC
TTCAACTGTCAACACAAAAGCACTGCATGAGATTGAGTTGGGTTCTCGAG
TGGTCGGCGCATCGGGAAGCCACCGTCATACCGTAGACTTGGACCAGTCA
TTATGGGGGGACGGACGCCAAGGCAAAACGTGAAATCGAGAAACCTCCCT
CGATTTTTAGCTGGCTGCCAAGTTAGTGCATGTTTTGAAGTGAAATTTAT
GAGGGCTAAACGGGTACCGGCAGCTTCATGCTGGAAACAAAAATAATGCA
TTTTACGAGTATTCTAGAGCAGTCGAAGTTACGGTATGCTTAGGATAGAT
CGACATTGCTGCAAGACCTCGGTACCTCGCGCTGATGATTTAGATAGCAG
CTAAAATTGACAACAAACACAATAGACGATATGTACGTAGGAGGACAAGG
AACAAATTAACATACCCTTGTTTACGATGAAGTATTGCTACTCGTACTCG
TAAGATGTACAAGGAGTTCAAAATGCTTCATGCTTGGTCGTAGATAGAGC
TCGTGGCTGTATATATATATAGCACAGAACAAAAAACACGAGGTTGTCTA
AATGAATGAAAAGCTAAATAAGGCTACTGGTTTAAGGTAGATTGTTTATA
TAATCACAAGGGCTAGGGTAGGTAGAATATTTTTAGCTTGTGAACTAAAT
ACGCTCGAGGCAAAATTTCCTCGACTTGCACCATAGAAAAGGCAAAAAAA
GCGAATAAAATTGAAGGTCATTCTCTTGTCTAAAGCTACCTACAGAAAAC
CCGCCTTCCCCCAGTTTTTCGTAGGAGGCTTTATCATCGATGGGTGGTGG
AAGGCTTTGGTCGAACTCCCCTCGCGCTTGGGACCTTTTGGTACACAGCA
AAGCCCCCCCCCCCGACCCCTAAACGCCCCCCAAACTAGCCCCTCGTTGA
ACGGTTGGCTCAGGCGGACTTGGAGCCTGGTGATGGTTGGAAAGGAAGTT
TGAGCAGAAGACGTTCATCAACTGTTAGCTGGGATGAATACAACGACGCT
GGCGAGGTGCGGCGTAGAGGGGAGATGTCGGGGTCCTTGTATGCTTCTCA
TAAATCTAAAGGGGAACCCTGTCGAGGTCTCCTGATTCGAAAACAGGTCG
ATGAAGTCTCACCAAGAACCATAACGCCTCGAGGATAAAATGATGTTTCG
CGAGTCTCAAAATGCAGTCTGCGGGGTAACCAAAAGGCTTCGAAAGCTAT
GAGATACCCACGATGACCCCTCCAACCCGTGGTCTTCCGTGCGCGCTACG
CGCAATGTGTCGCCAGCTTGACGAATCTTTTTCGGGGCCACAAATCTCGA
ACAGAAGGGGCAGTGGGTCGTCCACGACCGACACGGCGAAGCTCAAGCGT
CGAACCGACTACGGAAAAGAGGTGACGACTGTCGTGGCGCGGAGGCTTTC
GAGCAAAGAAGTTCTTCATTCCGCGAATATCAGAGACAGAGCATTGCCAC
GATAGCTCAAAATATTTTTCACGCGAATGCGATTTATTTGTTCTGATTGT
AGACGTGCGCGACTGAAGAGTCGTTTCCAACAGGCAACTTTCACGCGTGC
GCTTCGATAGGACCCTCCCCTGGAAAGCGGACACCGCGCAGCAGGTGCCC
GGTGCTCGCTACAGAGCGTTACGTCTGACAAAAGCCTTGTGCTCCATCGC
CCCCCCCTCCCCCAACGTCGCGATCATGCGAACTCCTCTGCTAACGGCGT
AGGTACGGGACAGCGCAGTTGGTCTGGTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig4759:2852..8633-

>mRNA_H-elongata_contig4759.11892.1 ID=mRNA_H-elongata_contig4759.11892.1|Name=mRNA_H-elongata_contig4759.11892.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2370bp|location=Sequence derived from alignment at H-elongata_contig4759:2852..8633- (Himanthalia elongata Himel1 dioecious)
ATGCCCTTGACGCGACAGGCCCGTTCCGAGACTGACGGCGCTTTGAAACA
AAAGAAGCTTAACAATATTCGACGGAAGAAATCTGTGGTTGGGGCTCACG
CCCCAGCCGTTTTTAAGCCTCCAAAGATGCCCTTGACGCGACAGGCCCGT
TCCGAGACTGACGGCGCTTTGAAACAAAAGAAGCTTAACAATATTCGACG
GAAGAAATCTGTGGTTGGGGCTCACGCCCCAGCCGTTTTTAAGCCTCCAA
AGTCTTTGCGCCGCATTGCGGACTCTTCGATCAAACTCAACGGGAATCGT
TTCCCTTTCTGTGTTGAATGTCCCCAGGGAAGTAGGGGAATCGACAGTCA
AGATGCCTTGGCGCGAAAAAGTTCGCTGTCGACGAGCAGCTTTGATCCGG
CTAGGCAGGCCAAGATCAAGGATGCTCAGACAAAGAGGCAGAGGGCGATG
GAGTATGGAAACAACGCGTTCAAGGCCACAAGCCGAGAGGGAGATCTCAA
AGAGCTCAATAAACAGTCTTTGCGCCGCATTGCGGACTCTTCGATCAAAC
TCAACGGGAATCGTTTCCCTTTCTGTGTTGAATGTCCCCAGGGAAGTAGG
GGAATCGACAGTCAAGATGCCTTGGCGCGAAAAAGTTCGCTGTCGACGAG
CAGCTTTGATCCGGCTAGGCAGGCCAAGATCAAGGATGCTCAGACAAAGA
GGCAGAGGGCGATGGAGTATGGAAACAACGCGTTCAAGGCCACAAGCCGA
GAGGGAGATCTCAAAGAGCTCAATAAACAGATTCTGGCGGAATTTGTCAG
TACCTTGGGCTGCGAGCGCGCTACTTTAATGTTGATCGACAGGCCTTCCC
AGATTCTGGCGGAATTTGTCAGTACCTTGGGCTGCGAGCGCGCTACTTTA
ATGTTGATCGACAGGCCTTCCCAGGAAATATTTTTCTTCGACGGGCCGAT
GCGCGTAGCCTTTCCGCTGAAGGCGGGCATCGCTGGTCGTTGTGCTTCGA
CCGGGATCGGCATGGTGGTCAACGATCCCTACTCTCATCCGCAATTCAAC
CCCAAGGCGATGTACAGAAATATTTTTCTTCGACGGGCCGATGCGCGTAG
CCTTTCCGCTGAAGGCGGGCATCGCTGGTCGTTGTGCTTCGACCGGGATC
GGCATGGTGGTCAACGATCCCTACTCTCATCCGCAATTCAACCCCAAGGC
GATGTACACTACCGGTTTCCGCACAAGAAACATCCTCTGCGAGCCCATCA
AGCTACCGGTTTCCGCACAAGAAACATCCTCTGCGAGCCCATCAAGAAGT
CACGTAGAGGGGGTGATGTGGTTGCCGTTCTGGAGATGCTGAACAAAAAG
GACGGCCAGAGCTTCACGGAGCAGAAGTCACGTAGAGGGGGTGATGTGGT
TGCCGTTCTGGAGATGCTGAACAAAAAGGACGGCCAGAGCTTCACGGAGC
AGGATTCCGCCGTGATGGAAATGTGCACCGTAAAAGTGGCGAACGCCCTG
GACACAACATTTGGGGCGCTCGTCTTGGCAGAGAAAGAGTGGTCAAAGGT
TGCTGGCCGCCGCCGAAGCTCGGCCGGCGTGGTGCTGCTAAACACCGCAG
AGGCCGCAGCGGCCGCCGCCACAGCCCAGGCGAGTCGGATGTTGCTGAAC
ACGATCTGGTGGAAGAGCCTTTGTGATAAATATGATTCCGCCGTGATGGA
AATGTGCACCGTAAAAGTGGCGAACGCCCTGGACACAACATTTGGGGCGC
TCGTCTTGGCAGAGAAAGAGTGGTCAAAGGTTGCTGGCCGCCGCCGAAGC
TCGGCCGGCGTGGTGCTGCTAAACACCGCAGAGGCCGCAGCGGCCGCCGC
CACAGCCCAGGCGAGTCGGATGTTGCTGAACACGATCTGGTGGAAGAGCC
TTTGTGATAAATATGCGGACTTGGAGCCTGGTGATGGTTGGAAAGGAAGT
TTGAGCAGAAGACGTTCATCAACTGTTAGCTGGGATGAATACAACGACGC
TGGCGAGGCGGACTTGGAGCCTGGTGATGGTTGGAAAGGAAGTTTGAGCA
GAAGACGTTCATCAACTGTTAGCTGGGATGAATACAACGACGCTGGCGAG
CTTGACGAATCTTTTTCGGGGCCACAAATCTCGAACAGAAGGGGCAGTGG
GTCGTCCACGACCGACACGGCGAAGCTCAAGCGTCGAACCGACTACGGAA
AAGAGCTTGACGAATCTTTTTCGGGGCCACAAATCTCGAACAGAAGGGGC
AGTGGGTCGTCCACGACCGACACGGCGAAGCTCAAGCGTCGAACCGACTA
CGGAAAAGAGGTACGGGACAGCGCAGTTGGTCTGGTGTAAGTACGGGACA
GCGCAGTTGGTCTGGTGTAA
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