prot_H-elongata_contig47465.11869.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47465.11869.1
Unique Nameprot_H-elongata_contig47465.11869.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length128
Homology
BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: D7FP34_ECTSI (Similar to neural cell expressed, developmentally down-regulated 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP34_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.450e-37
Identity = 75/130 (57.69%), Postives = 95/130 (73.08%), Query Frame = 0
Query:    1 AIIGSIGGVWQFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLS--NTSSKSSDQNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSPVESTNANAVIGAPALPPDLSRLTQIFQ 128
            +IIG+IGG+WQFV+ GFGLFFV++EKQ P+ KMRN RK++ KPA F   RLS  NTSS+SS+Q++++DAS+EDLP  WVKK+  NGS YY N++TGA Q  SP    NA    G  A PP  S L +IFQ
Sbjct:  314 SIIGAIGGIWQFVVTGFGLFFVFSEKQSPDRKMRNFRKSIGKPAEFANKRLSILNTSSRSSNQDVEIDASEEDLPVEWVKKQRPNGSIYYFNVMTGAKQTASPNHLDNA----GGSAPPPSNSALGRIFQ 439          
BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: D8LQB8_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 7.080e-32
Identity = 64/116 (55.17%), Postives = 87/116 (75.00%), Query Frame = 0
Query:    1 AIIGSIGGVWQFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLSNTSSKS-SDQNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSPVESTNANAVIGAPA 115
            AIIG+IGGVWQFV+  FGLFFV++EKQ P+ K+RN +K+V KPAS V   LS+ +S+  +  ++++DAS+EDLP GWVK++ KNG+ YY N+LTG A+E SP E+    AV   PA
Sbjct:  327 AIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVNRHLSSANSRDPTTPDVEIDASNEDLPIGWVKRQRKNGTTYYYNLLTGDARENSPTEAHAVVAVGVTPA 442          
BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: A0A6H5JSI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI3_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.640e-30
Identity = 66/129 (51.16%), Postives = 90/129 (69.77%), Query Frame = 0
Query:    1 AIIGSIGGVWQFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLSNTSSKSSD-QNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSPVESTNANAVIGAPALPPDLSRLTQIFQ 128
            AIIG+IGGVWQFV+  FGLFFV++EKQ P+ K+RN +K+V KPAS V   LS+ SS+     ++++D S+EDLP GWVK++ KNG+ YY N LTG A+E SP E+    AV   PA  P+   + + F+
Sbjct:  358 AIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVKRHLSSASSRDPTIPDVEIDTSNEDLPIGWVKRQRKNGTTYYYNPLTGDARENSPTEAHAVVAVGVTPA--PERRSIARAFR 484          
BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: D7FP33_ECTSI (E3 ubiquitin-protein ligase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP33_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 9.540e-30
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 0
Query:    1 AIIGSIGGVWQFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLSNTSSKSS--DQNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSP 101
            +IIG+IGG+WQFV+ GFGLFFVY+ KQ P+ KMRN RK+V KPAS V  RLS   S+SS  +Q+I++DAS+EDLP  WVKK+  NGS YY + LTG  Q   P
Sbjct:  320 SIIGAIGGIWQFVVTGFGLFFVYSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSSISNQDIELDASEEDLPADWVKKQRANGSIYYFHPLTGKKQSTPP 422          
BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: A0A6H5JBE8_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.250e-25
Identity = 61/122 (50.00%), Postives = 82/122 (67.21%), Query Frame = 0
Query:   11 QFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLS--NTSSKSSDQN--IDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSPVESTNANAVIGAPALPPDLSRLTQIFQ 128
            +FV+ GFGLFFV++E+Q P+ + RN RK++ KPA F  +RLS  N S +SS++N  +++DAS EDLP  WVKK+  NGS YY N++TGA Q  SP    +A    G  A PP  S L +IFQ
Sbjct:  375 EFVVTGFGLFFVFSERQSPDRRFRNFRKSIRKPAEFAGNRLSSLNISFRSSNRNQDVEIDASGEDLPVEWVKKQRPNGSIYYFNVMTGAKQTASPNRLDDA----GGAAPPPSNSALRRIFQ 492          
BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: A0A6H5JZ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ12_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.940e-22
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 0
Query:   11 QFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLSNTSSKSS--DQNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSP 101
            +FV+ GFGLFFV++ KQ P+ KMRN RK+V KPAS V  RLS   S+SS  +Q+I++D+S+EDLP  WVKK+  NGS YY + LTG  Q   P
Sbjct:  360 EFVVTGFGLFFVFSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSSTSNQDIELDSSEEDLPADWVKKQRANGSIYYFHPLTGKKQSTPP 452          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FP34_ECTSI2.450e-3757.69Similar to neural cell expressed, developmentally ... [more]
D8LQB8_ECTSI7.080e-3255.17WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JSI3_9PHAE1.640e-3051.16WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FP33_ECTSI9.540e-3060.19E3 ubiquitin-protein ligase, putative n=1 Tax=Ecto... [more]
A0A6H5JBE8_9PHAE3.250e-2550.00WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A6H5JZ12_9PHAE2.940e-2255.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.20.70.10coord: 67..108
e-value: 3.7E-6
score: 28.5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..128
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 2..24
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 70..103
score: 9.143
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 68..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47465contigH-elongata_contig47465:1068..2172 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47465.11869.1mRNA_H-elongata_contig47465.11869.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47465 1068..2173 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47465.11869.1 ID=prot_H-elongata_contig47465.11869.1|Name=mRNA_H-elongata_contig47465.11869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
AIIGSIGGVWQFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHR
LSNTSSKSSDQNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERS
PVESTNANAVIGAPALPPDLSRLTQIFQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR036020WW_dom_sf