mRNA_H-elongata_contig47314.11845.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47314.11845.1
Unique NamemRNA_H-elongata_contig47314.11845.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 9.350e-37
Identity = 82/212 (38.68%), Postives = 123/212 (58.02%), Query Frame = 1
Query:    7 TWNVRTMSERGTNGPGH-AEDLLMFAAKYKCDFIAIQQTRRDGRTIIQAPAAGYVVHRSGHCDGDGGKPGILGVCLAVKKSITPALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCH------KSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
            T+NV T++  G N  GH    ++   +   CD I +Q+TRR+G+  I     GYV+  SG   G   K G  GV +A+K++I  ++G +G   E IS RL+KVR+        TF+VGYAPTET  +        K  +W  L + + EV + DHL+++MGAN RTG R +G      +++G  GRD +N+NG RLL  +++++LS+ NT F
Sbjct:   13 TFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRDG--CCDAKIMGANGRDIMNNNGERLLELASDNQLSLTNTYF 220          
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A6H5J5Z5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Z5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 7.130e-21
Identity = 51/128 (39.84%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  256 ALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCH------KSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
            ++G +G   E IS RL+KVR+        TF+VGYAPT+T  T        K  +W  + + + EV + DHL+++M AN RTG R +G      +++G YGRD++N+NG RLL  +++++LS+ NT F
Sbjct:    4 SVGEEGRTVECISLRLMKVRLQIGRTCGVTFVVGYAPTDTVRTTAGGDVNAKDSFWTAVDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDSMNNNGERLLGPASDNQLSLTNTYF 129          
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A6H5KRE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.180e-19
Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 1
Query:  256 ALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCH------KSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
            ++  DG V E IS RL+KVR+        TF+VGYAP +T  T        K  +W  L + + E  + DHL+++MGAN RTG R +G      +++G YGRD +N+NG RLL  ++++ LS+ NT F
Sbjct:  112 SIAHDGTV-ECISPRLMKVRLTIGRTCGVTFVVGYAPAKTVRTTAGGDLNAKDSFWTALDAALREFQSRDHLVVLMGANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNHLSLTNTYF 236          
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A654HQ13_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HQ13_9CEST)

HSP 1 Score: 68.9 bits (167), Expect = 4.380e-10
Identity = 44/134 (32.84%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  220 GVCLAVKKSITPALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCHKSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
            GV   ++  I   +G    +P+ I+ RL+ +R+        T +  YAP  T     + K+++++ + +A V  +D LI++   NVR G  +     G   VLGP+GR+ LNDNG  LL   AE +L + NT F
Sbjct:  312 GVAFTIRNDI---VGQLLCLPQGINNRLMSLRLPLGRGKFVTILSVYAPPMTSPDTERDKFYEDIHTLLATVSKADKLIVLGDFNVRVG-TDHAAWRG---VLGPHGRNGLNDNGLLLLRTCAEQRLILTNTFF 438          
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: UPI001D0708D2 (craniofacial development protein 2-like n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D0708D2)

HSP 1 Score: 67.0 bits (162), Expect = 1.110e-9
Identity = 60/213 (28.17%), Postives = 95/213 (44.60%), Query Frame = 1
Query:    1 VATWNVRTMSERGTNGPGHAEDLLMFAAKYKCDFIAIQQTRRDGRTIIQAPAAGYVVHRSGHCDGDGGKPGILGVCLAVKKSITPALGPDGIVPEHI------SARLLKVRVIFNHRAVTTFIVGYAPTETEATCHKSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
            +ATWNVR++        G  E+L     +   + +AI +T++ G+  +       VV+   + +       + GV   + K+IT          EH+      S R+L V  I N   + T I+ Y P E +    K  +W++L  TV    A   +I++   N R G     G      V+GP+G +T N+NG R+L     + L I NTLF
Sbjct:   36 IATWNVRSLQ-------GKEEELEREFEEMGLEILAITETKKKGKGTVDTKNGHLVVYSGVNEE----MRAMAGVGCMINKNIT----------EHVNGWKGWSERILTVE-IENKDEMKTVIIVYGPNEDDNKQTKDSFWEDL--TVVTERAKGTIIILGDFNSRVGK----GDRMFESVMGPFGEETRNNNGERMLDFCLLNDLIITNTLF 220          
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A224XIY2_9HEMI (Putative rna-directed dna polymerase from mobile element jockey (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XIY2_9HEMI)

HSP 1 Score: 66.6 bits (161), Expect = 2.840e-9
Identity = 61/206 (29.61%), Postives = 94/206 (45.63%), Query Frame = 1
Query:    7 TWNVRTMSERGTNGPGHAEDLLMFAAKYKCDFIAIQQTRRDGRTIIQAPAAGYVVHRSGHCDGDGGKPGILGVCLAVKKSITPALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCHKSKYWKELRSTVAEVPASDHLILMMG-ANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
            TWNVR ++       G   +L+          +AI +T++ G    +  + GY++  SG       K    GV   V K IT  +     + E I    LK +   N++   T I  Y P E E T  K K+++ L+ TV +    D ++L++G  N R G  +     G  +VLGPYG +T N+ G RLL     + L + NT +
Sbjct:   38 TWNVRGIA-------GKELELIEEMKTASVQVVAITETKKKGTGCTEI-SDGYILIHSGVPTNTRAK---AGVAFLVHKDITGQIEGWKYINERILTLKLKDQ---NNKETFTLIAVYGPNEDELTEVKDKFFETLQKTVDD---EDGILLVLGDLNGRVGNCQ----TGYEKVLGPYGEETRNNIGKRLLQFCLANDLVLFNTRY 222          
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: UPI001D089350 (craniofacial development protein 2-like n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D089350)

HSP 1 Score: 61.2 bits (147), Expect = 1.230e-7
Identity = 45/175 (25.71%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   91 KCDFIAIQQTRRDGRTIIQAPAAGYVVHRSGHCDGDGGKPGILGVCLAVKKSITPALGPDGIVPEHISARLLKVRV-IFNHRAVTTFIVGYAPTETEATCHKSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVN 612
            K D   I +T++ G+    + + GY  H       D  +    G+ + +++++   +       E IS R++K+ + I+ HR  TT I  Y   +      K K++++L++ + +V  S  +I++   N R G           +++GPYG DT NDNG RL++   ++ + I+N
Sbjct:   12 KLDIAVITETKKKGQG---SESMGYYDHFYSGVPKD--RRAQQGISILIRRNLRKYIQSW----EAISERIIKMNLTIYGHR--TTIIEVYGVNDDSLVSTKDKFFEDLKNEIMKVGKSREIIILGDLNSRVGKNRNS------QIVGPYGEDTRNDNGNRLITLCEQNDVKIMN 169          
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A6J2YSY1_SITOR (craniofacial development protein 2-like n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YSY1_SITOR)

HSP 1 Score: 56.6 bits (135), Expect = 1.420e-6
Identity = 36/135 (26.67%), Postives = 67/135 (49.63%), Query Frame = 1
Query:  217 LGVCLAVKKSITPALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCHKSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
            LGV + +K+++   +       E IS R++K+ +      +T F V Y   +      K K++++L + + +V     +I++   N R G   +       +V+GPYG DT NDNG RL++   ++   I+N  +
Sbjct:   19 LGVSVLIKRNLRKHVHSW----EAISERIIKINMTVRENRITIFGV-YCIDDDSLVNVKDKFFEDLNNEITKVGKIREIIILGDLNCRVGKSTDS------QVVGPYGEDTKNDNGNRLIALCVQNDFKIMNGFY 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE9.350e-3738.68Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5J5Z5_9PHAE7.130e-2139.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KRE7_9PHAE1.180e-1940.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A654HQ13_9CEST4.380e-1032.84Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
UPI001D0708D21.110e-928.17craniofacial development protein 2-like n=1 Tax=Co... [more]
A0A224XIY2_9HEMI2.840e-929.61Putative rna-directed dna polymerase from mobile e... [more]
UPI001D0893501.230e-725.71craniofacial development protein 2-like n=1 Tax=Co... [more]
A0A6J2YSY1_SITOR1.420e-626.67craniofacial development protein 2-like n=1 Tax=Si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47314contigH-elongata_contig47314:3508..4128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score77.4
Seed ortholog evalue8.3e-12
Seed eggNOG ortholog13616.ENSMODP00000035506
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BPUP@33208,3D6HY@33213,3JJKA@40674,48CXU@7711,4992I@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size621
Cds size597
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930781.4788673-CDS-H-elongata_contig47314:3507..41041622930781.4788673-CDS-H-elongata_contig47314:3507..4104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47314 3508..4104 -
1691679567.5254812-CDS-H-elongata_contig47314:3507..41041691679567.5254812-CDS-H-elongata_contig47314:3507..4104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47314 3508..4104 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930781.4997966-UTR-H-elongata_contig47314:4104..41281622930781.4997966-UTR-H-elongata_contig47314:4104..4128Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47314 4105..4128 -
1691679567.5379736-UTR-H-elongata_contig47314:4104..41281691679567.5379736-UTR-H-elongata_contig47314:4104..4128Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47314 4105..4128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47314.11845.1prot_H-elongata_contig47314.11845.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47314 3508..4104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47314.11845.1

>prot_H-elongata_contig47314.11845.1 ID=prot_H-elongata_contig47314.11845.1|Name=mRNA_H-elongata_contig47314.11845.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
MSERGTNGPGHAEDLLMFAAKYKCDFIAIQQTRRDGRTIIQAPAAGYVVH
RSGHCDGDGGKPGILGVCLAVKKSITPALGPDGIVPEHISARLLKVRVIF
NHRAVTTFIVGYAPTETEATCHKSKYWKELRSTVAEVPASDHLILMMGAN
VRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF
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mRNA from alignment at H-elongata_contig47314:3508..4128-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47314.11845.1 ID=mRNA_H-elongata_contig47314.11845.1|Name=mRNA_H-elongata_contig47314.11845.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at H-elongata_contig47314:3508..4128- (Himanthalia elongata Himel1 dioecious)
GTTGCCACATGGAACGTCCGCACCATGTCTGAGAGAGGGACCAACGGCCC GGGGCACGCGGAGGATCTTTTGATGTTCGCTGCGAAGTACAAGTGCGATT TCATCGCCATACAGCAGACTCGCCGCGATGGAAGGACAATCATCCAAGCA CCAGCCGCTGGTTATGTCGTGCACCGCAGCGGTCATTGCGATGGTGATGG AGGTAAGCCCGGGATCCTCGGAGTTTGTCTGGCTGTCAAGAAGTCTATCA CTCCCGCACTCGGCCCAGATGGCATTGTGCCTGAACACATCAGTGCACGG CTGCTAAAGGTGAGGGTGATTTTCAATCACAGAGCCGTCACAACCTTCAT CGTGGGATACGCTCCGACTGAAACAGAAGCCACCTGTCACAAGTCTAAGT ACTGGAAGGAACTTCGCAGCACTGTCGCTGAGGTACCTGCCAGCGACCAC CTGATTTTGATGATGGGCGCTAACGTCCGTACGGGAGGAAGGGAAGAGGG AGGTGGACTAGGGGGTGTCCGGGTTTTGGGACCATACGGCAGAGACACTC TCAATGACAACGGGCCGCGACTTTTATCATGTTCTGCCGAGCACAAGCTG TCGATTGTCAACACTCTTTTC
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Coding sequence (CDS) from alignment at H-elongata_contig47314:3508..4128-

>mRNA_H-elongata_contig47314.11845.1 ID=mRNA_H-elongata_contig47314.11845.1|Name=mRNA_H-elongata_contig47314.11845.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig47314:3508..4128- (Himanthalia elongata Himel1 dioecious)
ATGTCTGAGAGAGGGACCAACGGCCCGGGGCACGCGGAGGATCTTTTGAT
GTTCGCTGCGAAGTACAAGTGCGATTTCATCGCCATACAGCAGACTCGCC
GCGATGGAAGGACAATCATCCAAGCACCAGCCGCTGGTTATGTCGTGCAC
CGCAGCGGTCATTGCGATGGTGATGGAGGTAAGCCCGGGATCCTCGGAGT
TTGTCTGGCTGTCAAGAAGTCTATCACTCCCGCACTCGGCCCAGATGGCA
TTGTGCCTGAACACATCAGTGCACGGCTGCTAAAGGTGAGGGTGATTTTC
AATCACAGAGCCGTCACAACCTTCATCGTGGGATACGCTCCGACTGAAAC
AGAAGCCACCTGTCACAAGTCTAAGTACTGGAAGGAACTTCGCAGCACTG
TCGCTGAGGTACCTGCCAGCGACCACCTGATTTTGATGATGGGCGCTAAC
GTCCGTACGGGAGGAAGGGAAGAGGGAGGTGGACTAGGGGGTGTCCGGGT
TTTGGGACCATACGGCAGAGACACTCTCAATGACAACGGGCCGCGACTTT
TATCATGTTCTGCCGAGCACAAGCTGTCGATTGTCAACACTCTTTTCATG
TCTGAGAGAGGGACCAACGGCCCGGGGCACGCGGAGGATCTTTTGATGTT
CGCTGCGAAGTACAAGTGCGATTTCATCGCCATACAGCAGACTCGCCGCG
ATGGAAGGACAATCATCCAAGCACCAGCCGCTGGTTATGTCGTGCACCGC
AGCGGTCATTGCGATGGTGATGGAGGTAAGCCCGGGATCCTCGGAGTTTG
TCTGGCTGTCAAGAAGTCTATCACTCCCGCACTCGGCCCAGATGGCATTG
TGCCTGAACACATCAGTGCACGGCTGCTAAAGGTGAGGGTGATTTTCAAT
CACAGAGCCGTCACAACCTTCATCGTGGGATACGCTCCGACTGAAACAGA
AGCCACCTGTCACAAGTCTAAGTACTGGAAGGAACTTCGCAGCACTGTCG
CTGAGGTACCTGCCAGCGACCACCTGATTTTGATGATGGGCGCTAACGTC
CGTACGGGAGGAAGGGAAGAGGGAGGTGGACTAGGGGGTGTCCGGGTTTT
GGGACCATACGGCAGAGACACTCTCAATGACAACGGGCCGCGACTTTTAT
CATGTTCTGCCGAGCACAAGCTGTCGATTGTCAACACTCTTTTC
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