mRNA_H-elongata_contig47292.11839.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47292.11839.1
Unique NamemRNA_H-elongata_contig47292.11839.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47292.11839.1 vs. uniprot
Match: D8LMQ3_ECTSI (Nitroreductase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ3_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.910e-43
Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    1 VSAVEAWSFKNTALAVQTYILACTAYGLATAPMEGFDARRFRAALDIPDRYSIPMVVCTGYPVAPEREDDQKEGRRVVIKRWRYPGEEVVFDGAFGVGMAGIDPV 315
            V++ EAWSFKNTALAVQTYIL+CTA+GL TAPMEGFDARR RAALDIPDRY IP++V TGYP AP + + Q  G  V  +RWRYP +EVVFDG FGVGM G+DPV
Sbjct:  212 VASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYP-APSKPEGQGGGGGVA-RRWRYPPQEVVFDGTFGVGMTGVDPV 314          
BLAST of mRNA_H-elongata_contig47292.11839.1 vs. uniprot
Match: A0A835Z3C4_9STRA (Putative nitroreductase family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.700e-22
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 VSAVEAWSFKNTALAVQTYILACTAYGLATAPMEGFDARRFRAALDIPDRYSIPMVVCTGYPVAPEREDDQKEGRRVVIKRWRYPGEEVVFDGAFG 288
            V++ EAWS+K+  LA QTY+LA TA+GLATAPMEGFD RR  AALD+PDRY + + V TGY      ED Q          WR+  EE+VF   FG
Sbjct:  137 VTSTEAWSYKHAGLAAQTYLLAATAHGLATAPMEGFDGRRVCAALDVPDRYGVAVAVATGY------EDPQHAPSAA---SWRFAPEEMVFLDRFG 223          
BLAST of mRNA_H-elongata_contig47292.11839.1 vs. uniprot
Match: A0A7S4DH27_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH27_HETAK)

HSP 1 Score: 95.9 bits (237), Expect = 1.040e-21
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    4 SAVEAWSFKNTALAVQTYILACTAYGLATAPMEGFDARRFRAALDIPDRYSIPMVVCTGYPVAPEREDDQKEGRRVVIKRWRYPGEEVVFDGAFG 288
            +A EAW+FKNT L VQT+IL CTA+GLA+APMEGFDARR +  L IPD YSIP+VV  GYP     ++D +E  +  I   R   + V F   FG
Sbjct:  174 NAPEAWAFKNTMLFVQTFILGCTAHGLASAPMEGFDARRIKVCLGIPDHYSIPIVVPFGYP-----KNDSEEKTKKNIPTPRLDLKRVFFSNKFG 263          
BLAST of mRNA_H-elongata_contig47292.11839.1 vs. uniprot
Match: A0A835Z5B9_9STRA (Nitroreductase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.180e-20
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 VSAVEAWSFKNTALAVQTYILACTAYGLATAPMEGFDARRFRAALDIPDRYSIPMVVCTGYPVAPEREDDQKEGRRVVIKRWRYPGEEVVFDGAFGVGMA 300
            V++ EAW+FKNT LAV+ ++LA  A GLAT PMEGFD R+ R    IP RYS+P+VV  GYP   +R   Q           R+P E+V +D  +G GMA
Sbjct:  162 VNSAEAWAFKNTMLAVEAFMLAAAANGLATCPMEGFDPRQLRKQFHIPRRYSVPVVVSIGYPKPSDRPLKQSR---------RFPPEQVFYDNQWGQGMA 252          
BLAST of mRNA_H-elongata_contig47292.11839.1 vs. uniprot
Match: A0A6S8C805_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8C805_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.910e-20
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 VSAVEAWSFKNTALAVQTYILACTAYGLATAPMEGFDARRFRAALDIPDRYSIPMVVCTGYPVAPER 201
            +++ E W+FKNT  A QT+IL C AYGLATAPMEGFDARR R AL IPDRY IP+VV  GYP   E+
Sbjct:  206 INSSEGWAFKNTMTAAQTFILGCHAYGLATAPMEGFDARRIRDALYIPDRYEIPVVVSVGYPSEEEK 272          
BLAST of mRNA_H-elongata_contig47292.11839.1 vs. uniprot
Match: A0A6T7ES08_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7ES08_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.310e-20
Identity = 51/101 (50.50%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   10 VEAWSFKNTALAVQTYILACTAYGLATAPMEGFDARRFRAALDIP-DRYSIPMVVCTGYPVAPEREDDQKEGRRVVIKRWRYPGEEVVFDGAFGVGMAGID 309
            VE+WS+KNTALA QTY LA  ++GLAT  MEG+D RR +  L IP +RYSIP++V TGY    E    +K  R         P EEV FDG FGV ++ +D
Sbjct:  184 VESWSYKNTALAAQTYTLAAHSHGLATCMMEGYDNRRVQRLLQIPPERYSIPLIVATGYEYQNESLHSKKTPR--------LPLEEVFFDGTFGVPLSDLD 276          
BLAST of mRNA_H-elongata_contig47292.11839.1 vs. uniprot
Match: A0A7S1UTI7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UTI7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.560e-20
Identity = 51/93 (54.84%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   10 VEAWSFKNTALAVQTYILACTAYGLATAPMEGFDARRFRAALDIPDRYSIPMVVCTGYPVAPEREDDQKEGRRVVIKRWRYPGEEVVFDGAFG 288
            V+AWS+KNTAL  QTY+LA T++GLAT  MEGFD RR +  L IPDRY IPM+V TGY    E E D +    V     R   EEVVF   FG
Sbjct:   68 VQAWSYKNTALMAQTYVLAATSHGLATCIMEGFDGRRAKEILQIPDRYEIPMMVATGY----EYEADDET--TVPPMTPRLDLEEVVFGETFG 154          
BLAST of mRNA_H-elongata_contig47292.11839.1 vs. uniprot
Match: A0A0G4EQ18_VITBC (Nitroreductase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EQ18_VITBC)

HSP 1 Score: 89.4 bits (220), Expect = 7.250e-19
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    4 SAVEAWSFKNTALAVQTYILACTAYGLATAPMEGFDARRFRAALDIPDRYSIPMVVCTGYPVAPEREDDQKEGRRVVIKRWRYPGEEVVF 273
            S  E W++KNT LAVQTY+L  +AYGL TAPMEGFD  R R  L +PDR+S+P+VV TGYP       D    R   +   R P +E VF
Sbjct:  266 SMAETWAYKNTMLAVQTYMLLASAYGLGTAPMEGFDMVRLRRVLMLPDRFSVPLVVATGYPA------DAPISRTYPLLSGRLPMDEQVF 349          
BLAST of mRNA_H-elongata_contig47292.11839.1 vs. uniprot
Match: A0A5D6YFF2_9STRA (Nitroreductase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFF2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 9.400e-19
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   16 AWSFKNTALAVQTYILACTAYGLATAPMEGFDARRFRAALDIPDRYSIPMVVCTGYPVAPEREDDQKEGRRVVIKRWRYPGEEVVFDGAFG 288
            AW++K TA A  T++ A  A GLAT+ MEGFD  R +AALDIPDRYSIP+VVC GYP        Q E  R      R    EV FDG FG
Sbjct:  182 AWAYKQTAFAAATFMFAAEASGLATSAMEGFDDARLKAALDIPDRYSIPVVVCCGYP--------QPEKLRTDSTTPRLAPTEVFFDGKFG 264          
BLAST of mRNA_H-elongata_contig47292.11839.1 vs. uniprot
Match: A0A4D9DF56_9STRA (Nitroreductase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DF56_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 9.520e-19
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 VSAVEAWSFKNTALAVQTYILACTAYGLATAPMEGFDARRFRAALDIP-DRYSIPMVVCTGYPV-----APEREDDQKEGRRVVIKRWRYPGEEVVFDGAFGVGMAGI 306
            VS +EAWS+KNTA+A   Y+L+C+ +GL T PMEGFD RR    L IP  RY+IP+VV TG+ +     +PER ++ K       K  R+P E VVF   +G    GI
Sbjct:  219 VSTLEAWSYKNTAIAASWYMLSCSVHGLDTCPMEGFDGRRIMHELHIPASRYAIPLVVSTGFAMPLPSSSPERNEEAK-------KSPRFPPEAVVFKDQYGHAYKGI 319          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47292.11839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ3_ECTSI1.910e-4372.38Nitroreductase domain-containing protein n=2 Tax=E... [more]
A0A835Z3C4_9STRA3.700e-2253.13Putative nitroreductase family n=1 Tax=Tribonema m... [more]
A0A7S4DH27_HETAK1.040e-2153.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z5B9_9STRA1.180e-2048.00Nitroreductase-like protein n=1 Tax=Tribonema minu... [more]
A0A6S8C805_9STRA1.910e-2065.67Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A6T7ES08_9STRA3.310e-2050.50Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1UTI7_9STRA3.560e-2054.84Hypothetical protein (Fragment) n=2 Tax=Grammatoph... [more]
A0A0G4EQ18_VITBC7.250e-1951.11Nitroreductase domain-containing protein n=2 Tax=V... [more]
A0A5D6YFF2_9STRA9.400e-1952.75Nitroreductase domain-containing protein n=1 Tax=P... [more]
A0A4D9DF56_9STRA9.520e-1946.30Nitroreductase domain-containing protein n=2 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47292contigH-elongata_contig47292:269..1187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue5e-35
Seed eggNOG ortholog2880.D8LMQ3
EggNOG free text desc.Nitroreductase family
EggNOG OGs2RZ0D@2759,COG0778@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930780.2225597-CDS-H-elongata_contig47292:268..3891622930780.2225597-CDS-H-elongata_contig47292:268..389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47292 269..389 +
1691679566.9158618-CDS-H-elongata_contig47292:268..3891691679566.9158618-CDS-H-elongata_contig47292:268..389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47292 269..389 +
1622930780.2445745-CDS-H-elongata_contig47292:981..11871622930780.2445745-CDS-H-elongata_contig47292:981..1187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47292 982..1187 +
1691679566.9295094-CDS-H-elongata_contig47292:981..11871691679566.9295094-CDS-H-elongata_contig47292:981..1187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47292 982..1187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47292.11839.1prot_H-elongata_contig47292.11839.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47292 269..1187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47292.11839.1

>prot_H-elongata_contig47292.11839.1 ID=prot_H-elongata_contig47292.11839.1|Name=mRNA_H-elongata_contig47292.11839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
VSAVEAWSFKNTALAVQTYILACTAYGLATAPMEGFDARRFRAALDIPDR
YSIPMVVCTGYPVAPEREDDQKEGRRVVIKRWRYPGEEVVFDGAFGVGMA
GIDPVFGE*
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mRNA from alignment at H-elongata_contig47292:269..1187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47292.11839.1 ID=mRNA_H-elongata_contig47292.11839.1|Name=mRNA_H-elongata_contig47292.11839.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=919bp|location=Sequence derived from alignment at H-elongata_contig47292:269..1187+ (Himanthalia elongata Himel1 dioecious)
GTGTCAGCGGTGGAGGCGTGGTCTTTCAAGAACACCGCACTGGCCGTTCA GACGTACATACTCGCATGCACGGCGTACGGTCTGGCCACAGCTCCCATGG AAGGCTTCGACGCTCGAAGGTGTAAGGGCGAAAAGCAACAAAAACCGAAA CAAAGCATATATATATATAATATATAATCTCTCAATAATAATATTTTTTC GCTATAAAAACTAGAAAAATAAAATAAAATGATTACGTGTGGTAGCACAG AACGTTTCCTGCAGACGAGTGTCGCACATACGTTAGGCCTCCGTACCGGT AGCTCTAGTCTACATCGAGACACCCTGCGTGTAGATCTACGCTGAGACGC GACGCATTTTTTTCACAGGAATAGGAACATGTTATACCGCGAGTGAACGA GTCTAGCACCAATACATGTTTCTTTTCACTGTCGAGAGAGAGGGAGGGTG GAGGGAGCAAAATAAAGCGTAAAAATAAACCTAGTTTTTCTACTGGCATG TTCTCGAGAGATAAAACAAGTGGGGGGGTGGTTCTTTCTGTTCCAAGTGA TTTATTGTTGCTCTCCCTTATCAGTTATATAGGTTGTACGCCAATTCAAG AGTGCTATGCTAATAACAAAATATTTAGTTGCTGGCCCGTGGCCCTTCTC TCGTTGCCACAATGCCTCCTTACCACCTCACGCCCATCCGAATTGGATTA CGTTGTCGCAGAGTTCGGGCCGCGCTAGACATCCCGGATCGATACAGCAT CCCCATGGTTGTGTGCACCGGCTACCCTGTGGCCCCAGAGCGGGAGGATG ACCAGAAGGAGGGTAGGAGGGTTGTAATCAAGAGGTGGCGTTATCCTGGC GAGGAGGTGGTGTTCGACGGGGCGTTTGGTGTCGGAATGGCCGGGATCGA TCCCGTTTTTGGAGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig47292:269..1187+

>mRNA_H-elongata_contig47292.11839.1 ID=mRNA_H-elongata_contig47292.11839.1|Name=mRNA_H-elongata_contig47292.11839.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig47292:269..1187+ (Himanthalia elongata Himel1 dioecious)
GTGTCAGCGGTGGAGGCGTGGTCTTTCAAGAACACCGCACTGGCCGTTCA
GACGTACATACTCGCATGCACGGCGTACGGTCTGGCCACAGCTCCCATGG
AAGGCTTCGACGCTCGAAGGTGTGTCAGCGGTGGAGGCGTGGTCTTTCAA
GAACACCGCACTGGCCGTTCAGACGTACATACTCGCATGCACGGCGTACG
GTCTGGCCACAGCTCCCATGGAAGGCTTCGACGCTCGAAGGTTTCGGGCC
GCGCTAGACATCCCGGATCGATACAGCATCCCCATGGTTGTGTGCACCGG
CTACCCTGTGGCCCCAGAGCGGGAGGATGACCAGAAGGAGGGTAGGAGGG
TTGTAATCAAGAGGTGGCGTTATCCTGGCGAGGAGGTGGTGTTCGACGGG
GCGTTTGGTGTCGGAATGGCCGGGATCGATCCCGTTTTTGGAGAGTAGTT
CGGGCCGCGCTAGACATCCCGGATCGATACAGCATCCCCATGGTTGTGTG
CACCGGCTACCCTGTGGCCCCAGAGCGGGAGGATGACCAGAAGGAGGGTA
GGAGGGTTGTAATCAAGAGGTGGCGTTATCCTGGCGAGGAGGTGGTGTTC
GACGGGGCGTTTGGTGTCGGAATGGCCGGGATCGATCCCGTTTTTGGAGA
GTAG
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