prot_H-elongata_contig4729.11838.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4729.11838.1
Unique Nameprot_H-elongata_contig4729.11838.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length246
Homology
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BLAST of mRNA_H-elongata_contig4729.11838.1 vs. uniprot
Match: D8LE96_ECTSI (Ubiquitin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE96_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.350e-19
Identity = 82/216 (37.96%), Postives = 109/216 (50.46%), Query Frame = 0 
Query:    1 MFLKPRDSRVILQVDKIDLSKEFGPWPFKWEFEA-------------------------------AQTEIADPAMAASELLQQQAQLEGDVGEAARVALEAERQEEAEAAQ------KADKEMAFAQAFATAAAPLPGVPLSASLDXXXXXXXXXXXXVLSKVNADGAASSLEGKVGEAGLR-LKYKDGVEEAFWEL-GRYGPTTAEVEEEPLGET 177
            + LKPR++  I++VDK+DL++EF P PF W FEA                                 T +   A+ AS+LL++QAQLEGD+GEAARVAL+ E++E AEA        K  +E   +QA A  A+ LP +P                  V+SKV ADG +SS EGKVG+AG      + G E  FW +    GP    VE+E  GET
Sbjct: 3753 LLLKPRETAGIMEVDKLDLTREFQPHPFNWVFEALPETPTATEGAATAPXXXXXXXXXXXXXGEAVPTTVLPTALTASDLLEKQAQLEGDLGEAARVALKLEQEEAAEAQAAAIXXAKRAEEHELSQAVAATASSLPVIPYE----------------VVSKVKADGISSSSEGKVGDAGADDAGRRAGDEAEFWAVRAEAGPR---VEDEEHGET 3949
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4729.11838.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE96_ECTSI2.350e-1937.96Ubiquitin domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4729contigH-elongata_contig4729:2721..3808 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4729.11838.1mRNA_H-elongata_contig4729.11838.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4729 1461..4124 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4729.11838.1 ID=prot_H-elongata_contig4729.11838.1|Name=mRNA_H-elongata_contig4729.11838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=246bp
MFLKPRDSRVILQVDKIDLSKEFGPWPFKWEFEAAQTEIADPAMAASELL
QQQAQLEGDVGEAARVALEAERQEEAEAAQKADKEMAFAQAFATAAAPLP
GVPLSASLDVPLGVPLDVPLEVLSKVNADGAASSLEGKVGEAGLRLKYKD
GVEEAFWELGRYGPTTAEVEEEPLGETETATEVDEDSVDLKDDEVTVLFE
DKGDVGEVKPEGELTKVEAGTSADGEVDEAYEAAGIQDGEHRVYV*
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