mRNA_H-elongata_contig47273.11837.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47273.11837.1
Unique NamemRNA_H-elongata_contig47273.11837.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47273.11837.1 vs. uniprot
Match: A0A6H5JFE7_9PHAE (J domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE7_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 4.770e-34
Identity = 73/121 (60.33%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:    1 RERYHRRGIGALEEGGIGWSGEEGCDRDDIGGRGEFSARTF------DPMEVFRTFLGGGVFEHLIGPLSPRMVPVQDPDYHHQTSRALAEDLERRLEVNVRGDFSWFDQIAWAEALQLRE 345
            RE+YHRRG+ ALEE    W G +   R                    DPMEVFRTFLGGG+FEHLIGPLSPRMVPV+DPDYHH+ S++LAE+LERRLEV+V+G+  +F+Q AWAEALQLRE
Sbjct:  283 REKYHRRGVSALEE--DSWEGSQNEQRGXXXXXXXXXXXXXXXXXRVDPMEVFRTFLGGGMFEHLIGPLSPRMVPVRDPDYHHRKSKSLAEELERRLEVDVQGNSFYFNQAAWAEALQLRE 401
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BLAST of mRNA_H-elongata_contig47273.11837.1 vs. uniprot
Match: D8LDC1_ECTSI (DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC1_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.600e-28
Identity = 56/72 (77.78%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:  130 MEVFRTFLGGGVFEHLIGPLSPRMVPVQDPDYHHQTSRALAEDLERRLEVNVRGDFSWFDQIAWAEALQLRE 345
            ++VFRTFLGGG+FEHLIGPLSPRMVPV+DPDYHH+ S++LAE+LERRLEV+VRG+  +F+Q AWAEALQLRE
Sbjct:  247 LKVFRTFLGGGMFEHLIGPLSPRMVPVRDPDYHHRKSKSLAEELERRLEVDVRGNSFYFNQAAWAEALQLRE 318
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47273.11837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFE7_9PHAE4.770e-3460.33J domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D8LDC1_ECTSI1.600e-2877.78DnaJ domain containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47273contigH-elongata_contig47273:169..2215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue3.7e-26
Seed eggNOG ortholog2880.D8LDC1
GOsGO:0001775,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002521,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0019538,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030097,GO:0030098,GO:0030154,GO:0030163,GO:0030183,GO:0030433,GO:0030968,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036498,GO:0036503,GO:0042113,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045321,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051087,GO:0051603,GO:0051716,GO:0051787,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071704,GO:0080134,GO:0080135,GO:0098827,GO:1900101,GO:1900102,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903573,GO:1903894,GO:1903895,GO:1905897
EggNOG free text desc.toxin transport
EggNOG OGsCOG2214@1,KOG0691@2759
Ec32 ortholog descriptionDnaJ domain containing protein
Ec32 orthologEc-25_001800.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size558
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47273.11837.1prot_H-elongata_contig47273.11837.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47273 298..1553 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930780.0001988-UTR-H-elongata_contig47273:168..2971622930780.0001988-UTR-H-elongata_contig47273:168..297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47273 169..297 +
1691679566.819574-UTR-H-elongata_contig47273:168..2971691679566.819574-UTR-H-elongata_contig47273:168..297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47273 169..297 +
1622930780.071991-UTR-H-elongata_contig47273:2005..22151622930780.071991-UTR-H-elongata_contig47273:2005..2215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47273 2006..2215 +
1691679566.859706-UTR-H-elongata_contig47273:2005..22151691679566.859706-UTR-H-elongata_contig47273:2005..2215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47273 2006..2215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930780.015518-CDS-H-elongata_contig47273:297..3031622930780.015518-CDS-H-elongata_contig47273:297..303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47273 298..303 +
1691679566.8298302-CDS-H-elongata_contig47273:297..3031691679566.8298302-CDS-H-elongata_contig47273:297..303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47273 298..303 +
1622930780.033209-CDS-H-elongata_contig47273:1075..11951622930780.033209-CDS-H-elongata_contig47273:1075..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47273 1076..1195 +
1691679566.8390498-CDS-H-elongata_contig47273:1075..11951691679566.8390498-CDS-H-elongata_contig47273:1075..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47273 1076..1195 +
1622930780.0566483-CDS-H-elongata_contig47273:1460..15531622930780.0566483-CDS-H-elongata_contig47273:1460..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47273 1461..1553 +
1691679566.8493025-CDS-H-elongata_contig47273:1460..15531691679566.8493025-CDS-H-elongata_contig47273:1460..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47273 1461..1553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47273.11837.1

>prot_H-elongata_contig47273.11837.1 ID=prot_H-elongata_contig47273.11837.1|Name=mRNA_H-elongata_contig47273.11837.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MEVFRTFLGGGVFEHLIGPLSPRMVPVQDPDYHHQTSRALAEDLERRLEV
NVRGDFSWFDQIAWAEALQLRE*
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mRNA from alignment at H-elongata_contig47273:169..2215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47273.11837.1 ID=mRNA_H-elongata_contig47273.11837.1|Name=mRNA_H-elongata_contig47273.11837.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2047bp|location=Sequence derived from alignment at H-elongata_contig47273:169..2215+ (Himanthalia elongata Himel1 dioecious)
AGGGAGCGATACCATCGGAGAGGGATCGGCGCGCTGGAAGAGGGTGGTAT
CGGCTGGAGCGGGGAAGAAGGATGCGACCGAGACGACATCGGCGGGCGCG
GAGAGTTCTCTGCACGGACGTTTGATCCCATGGAGGTGTGTATGCACACC
CTGTGTCCTACTCGACCACGTGCGCGCAATATTTTTTTTTGCTTGTTCGC
ACACTCTCGACCCTATCTGCGAGTATTTTCGATCCTTGTTATCCATTGCG
ACGGCTGAGAAGATAATTTTGCTTGGGTGTTTGCCATGAAAAAATTTAGC
TTTCGGCTGCAAGTACCCCCGTCTACCCCCCCCCCCCCCCCCCCCCCCCG
TGTGCGTTTCGTGTGTTCCGCCTGCCCCCCTCTTATACCCTGTTTTTGCT
GGGTTTTTCGCCATCAAAAATTTTAGTTTTCGCCTCCAGGTCCCCCCGTC
GCCCCCCCCCCCTCCCCTCTCGGTGTGTGTGTATGTGGTGTGCGTCCAGC
GCTTATATATTAACGTGGTACATAGAGTATAGTCGCACCGGCTGAATGGG
AACATTTCGCTACCCGGTGTGTCCAAATAACCCATATAACCCATGACATG
TCCGATTTGGCGTACCAAACGCAAGGATAATGACAAACAGCTGGTATCAT
CCATGTAAAACGCAGCCTCGCCGGCAAAAAGCCGCCGTATCGCTCTGTCC
CGTCATTGCTGGGATGCATGTTTTACGTCTGTTAGAAAACGATGTACGTT
TAACATACGTACACCCCCTCTCCCTGTCGCCCTAGAGTTGTGTGGAAACC
CTTCGATAAAAAACATGTGGTGGACACGGGTGCGATGATCGCGGGGGAGC
TTAAACTTAAGGGGGGGCCTCTGGGTCCCGTGACGACCACTCCGTTTCTG
TCCTCAGGTTTTCCGTACTTTCCTCGGAGGAGGCGTGTTCGAGCACTTGA
TCGGCCCGCTCAGCCCGCGGATGGTCCCCGTGCAGGACCCAGACTACCAT
CACCAGACGTCAAGAGCCTTGGCGGAGGTAACGCGCTCAGCAGCAGGACC
ATCCCTTGCACGCGCATAGCTGAAAGCCTGTCGTTGGTGCTTAAAGCAGT
CTACGTGCGGTGTTTAACTATCTAGCTCTAATTATGTACCATTTTTTTTT
TTTACCGGTGTCTTCTTTCTCTCCATCCTTTTTGGTTAGTCCGTAGAGCT
CTGGTTCGCTGGCCTTTTCCCACTCGGGCGCGATAGTGGAGGGGAAAAGT
AGGGTTTCCACACGCTTGTGTTGTCTTTTTCCGTTGCGGCAGGATCTGGA
GCGGAGGCTGGAGGTGAATGTGCGGGGAGACTTCAGCTGGTTTGATCAGA
TAGCTTGGGCCGAGGCGTTGCAGCTGAGAGAATAGGTACCCTGGCGTGTT
GCGCCGCGTTTCTCTTAGGAAGCGCAATCGACTCTTGCGAACACCTTGAC
ACTTGCCAGTTGGAGGGGGGAGGTATAAAGATTCCTTGAGCAAGACGGAC
GTGTCTGTCAGCTGTGCGCCCCCGCTCTGTTGGGCAGGATAGGATGTCGG
GATTTGTGGATTGGATTGGATATTTTTCAAGCCAAGTGCGTTCATTCGTC
ATAGATGTCATGATGTGGCTCCTGGATGGAAAGTTATCGGAAAAGCAAAG
AGCCGTCCGCACTGTTGGCCATGAGATAATCCAAGAATTGTAGCTTTCCC
CCAGACTGCCGGCGACAGAGAAGACGCTCACACGAGTTGACGATGATCGC
CCTGACATCTCCGGTGTCCTCTACCCTTTCCTTTTGTGCCATGTATTTTT
CCGTTGTGATTCTTTCACGCCCTCGGCGTCCGTCCAGTCCATGGGCCGGC
AGATCCTCAGCACCCTAGGATATGTGTACACGAACTACGCCCAGAGATCG
CTGGGAAAGCTTGCACCCGGCGTTCTCCAGCCGGAGGCCATCCGAGGCAA
GATCGAGTTCTACTCGGACCAGGCCCATCGTGTGAACAATCTTTTGGCGG
CGGTCTCCTCGACCACGCGGCTTTACGTGCATTTGCAGACAAGGTGT
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Coding sequence (CDS) from alignment at H-elongata_contig47273:169..2215+

>mRNA_H-elongata_contig47273.11837.1 ID=mRNA_H-elongata_contig47273.11837.1|Name=mRNA_H-elongata_contig47273.11837.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig47273:169..2215+ (Himanthalia elongata Himel1 dioecious)
ATGGAGATGGAGGTTTTCCGTACTTTCCTCGGAGGAGGCGTGTTCGAGCA
CTTGATCGGCCCGCTCAGCCCGCGGATGGTCCCCGTGCAGGACCCAGACT
ACCATCACCAGACGTCAAGAGCCTTGGCGGAGGTTTTCCGTACTTTCCTC
GGAGGAGGCGTGTTCGAGCACTTGATCGGCCCGCTCAGCCCGCGGATGGT
CCCCGTGCAGGACCCAGACTACCATCACCAGACGTCAAGAGCCTTGGCGG
AGGATCTGGAGCGGAGGCTGGAGGTGAATGTGCGGGGAGACTTCAGCTGG
TTTGATCAGATAGCTTGGGCCGAGGCGTTGCAGCTGAGAGAATAGGATCT
GGAGCGGAGGCTGGAGGTGAATGTGCGGGGAGACTTCAGCTGGTTTGATC
AGATAGCTTGGGCCGAGGCGTTGCAGCTGAGAGAATAG
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