mRNA_H-elongata_contig47128.11815.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47128.11815.1
Unique NamemRNA_H-elongata_contig47128.11815.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47128.11815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47128contigH-elongata_contig47128:2831..4058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size936
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47128.11815.1prot_H-elongata_contig47128.11815.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47128 3218..4013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.3603442-UTR-H-elongata_contig47128:2830..32171622930777.3603442-UTR-H-elongata_contig47128:2830..3217Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47128 2831..3217 +
1691679565.6907563-UTR-H-elongata_contig47128:2830..32171691679565.6907563-UTR-H-elongata_contig47128:2830..3217Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47128 2831..3217 +
1622930777.434172-UTR-H-elongata_contig47128:4013..40581622930777.434172-UTR-H-elongata_contig47128:4013..4058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47128 4014..4058 +
1691679565.725422-UTR-H-elongata_contig47128:4013..40581691679565.725422-UTR-H-elongata_contig47128:4013..4058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47128 4014..4058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.4009066-CDS-H-elongata_contig47128:3217..33501622930777.4009066-CDS-H-elongata_contig47128:3217..3350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47128 3218..3350 +
1691679565.7070258-CDS-H-elongata_contig47128:3217..33501691679565.7070258-CDS-H-elongata_contig47128:3217..3350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47128 3218..3350 +
1622930777.4176037-CDS-H-elongata_contig47128:3642..40131622930777.4176037-CDS-H-elongata_contig47128:3642..4013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47128 3643..4013 +
1691679565.7156222-CDS-H-elongata_contig47128:3642..40131691679565.7156222-CDS-H-elongata_contig47128:3642..4013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47128 3643..4013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47128.11815.1

>prot_H-elongata_contig47128.11815.1 ID=prot_H-elongata_contig47128.11815.1|Name=mRNA_H-elongata_contig47128.11815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
MELLLKAGRLRGIRNRSCRDLSRGQLLCLVLCVEVAHALADRVTGGECKV
EKLPAPVLCLDEFLETEDARVRRGVEGVCASLCLLGVTIVFATHVMDHVE
GMITSSATTSSTKVIRRHSRRGSSGGASGRVATFTGGQTSELRQLEECTY
VDWKRTDDARRRAQRVI*
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mRNA from alignment at H-elongata_contig47128:2831..4058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47128.11815.1 ID=mRNA_H-elongata_contig47128.11815.1|Name=mRNA_H-elongata_contig47128.11815.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1228bp|location=Sequence derived from alignment at H-elongata_contig47128:2831..4058+ (Himanthalia elongata Himel1 dioecious)
AGCACCTTCTTGCGCCTACTATGCGGAGACCTCACACCCAGTTCGGGCGA
AATCTTCATCGGTACCTCTCTACTTCCTGTGAGTAGCTCCACGAGCTCAT
CGGGAAAGCAAACTGCCGTCCAGAGAGCAGCAGCTGAAGTGTCGGGTGCT
ATTTCTACCAAGTCCGCCTCTCCAACGAAGCCCAGCGGTGTTCTGCAGAA
CCGATTGCTAAAAGCGGTACCTCCGGGTGGTGTAAAATACATCGACCGGC
GCGCGGTCCAAAGACTGGTGAACGCTGAAACTAGTACGGTTGCCCAAGCA
CTTGCTACCATATTTTACCCCCAGAGCTCGAGTCTGAGTCAGCAGCATCA
AAGCGTACAGGGGAAGGAGGGTGTCAAAGATTGCCCAATGGAGCTGCTGT
TGAAGGCAGGAAGATTACGGGGCATCCGCAACAGATCTTGCAGGGATCTA
TCCAGAGGGCAGCTTTTGTGTCTGGTGCTTTGTGTAGAGGTGGCACATGC
GCTTGCTGACCGAGTGACCGGTGAGGATTTTCGGAGAAACCGAAAGCTGG
CGGCGAGCCAAAAACGTGGGTCTGAAAAAACAATTTAACCTGCATCAAAG
GATGTGGGGTGCTTTGAGGCGCGCTTGTTGGTGGTATTGTATTCATAAAG
ACGCCAGGCGAATCATTAGAGGCTGATCGAGTCGTTATTCGTATACACGA
AGGAACCTGCCGTAAACGATCTTAGACTAGCTAAAAGATATTTTCCCCGG
TGCCCTGTTTGATAGGTAAATCGATGTCATCACAGGTTATATGGCGCTGT
TTCCCCACACAGGTGGCGAATGTAAGGTGGAGAAATTGCCAGCACCGGTG
CTCTGTCTGGACGAGTTCCTTGAAACTGAAGATGCCCGCGTGAGGCGAGG
CGTCGAAGGCGTCTGCGCGAGCCTGTGCTTGCTGGGCGTGACAATTGTTT
TCGCCACTCACGTGATGGATCACGTAGAGGGTATGATTACCTCGTCGGCA
ACTACGTCGTCAACCAAAGTGATTCGCCGCCACAGTCGTAGGGGGAGCAG
CGGCGGCGCCAGTGGCAGGGTGGCCACATTCACCGGTGGTCAGACTAGCG
AGCTGCGCCAGTTGGAGGAATGCACGTATGTCGACTGGAAGAGGACCGAC
GATGCGCGCCGTCGAGCTCAGAGAGTTATATGATACCAAAAAGAATATAA
GGGAACGAAGGAAAACAATAAGATGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig47128:2831..4058+

>mRNA_H-elongata_contig47128.11815.1 ID=mRNA_H-elongata_contig47128.11815.1|Name=mRNA_H-elongata_contig47128.11815.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig47128:2831..4058+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCTGCTGTTGAAGGCAGGAAGATTACGGGGCATCCGCAACAGATC
TTGCAGGGATCTATCCAGAGGGCAGCTTTTGTGTCTGGTGCTTTGTGTAG
AGGTGGCACATGCGCTTGCTGACCGAGTGACCGATGGAGCTGCTGTTGAA
GGCAGGAAGATTACGGGGCATCCGCAACAGATCTTGCAGGGATCTATCCA
GAGGGCAGCTTTTGTGTCTGGTGCTTTGTGTAGAGGTGGCACATGCGCTT
GCTGACCGAGTGACCGGTGGCGAATGTAAGGTGGAGAAATTGCCAGCACC
GGTGCTCTGTCTGGACGAGTTCCTTGAAACTGAAGATGCCCGCGTGAGGC
GAGGCGTCGAAGGCGTCTGCGCGAGCCTGTGCTTGCTGGGCGTGACAATT
GTTTTCGCCACTCACGTGATGGATCACGTAGAGGGTATGATTACCTCGTC
GGCAACTACGTCGTCAACCAAAGTGATTCGCCGCCACAGTCGTAGGGGGA
GCAGCGGCGGCGCCAGTGGCAGGGTGGCCACATTCACCGGTGGTCAGACT
AGCGAGCTGCGCCAGTTGGAGGAATGCACGTATGTCGACTGGAAGAGGAC
CGACGATGCGCGCCGTCGAGCTCAGAGAGTTATATGAGTGGCGAATGTAA
GGTGGAGAAATTGCCAGCACCGGTGCTCTGTCTGGACGAGTTCCTTGAAA
CTGAAGATGCCCGCGTGAGGCGAGGCGTCGAAGGCGTCTGCGCGAGCCTG
TGCTTGCTGGGCGTGACAATTGTTTTCGCCACTCACGTGATGGATCACGT
AGAGGGTATGATTACCTCGTCGGCAACTACGTCGTCAACCAAAGTGATTC
GCCGCCACAGTCGTAGGGGGAGCAGCGGCGGCGCCAGTGGCAGGGTGGCC
ACATTCACCGGTGGTCAGACTAGCGAGCTGCGCCAGTTGGAGGAATGCAC
GTATGTCGACTGGAAGAGGACCGACGATGCGCGCCGTCGAGCTCAGAGAG
TTATATGA
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