prot_H-elongata_contig4707.11805.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4707.11805.1
Unique Nameprot_H-elongata_contig4707.11805.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
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BLAST of mRNA_H-elongata_contig4707.11805.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.010e-8
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 0 
Query:    2 VQRYLQLSLRLSARLRSMPPEHPLQDFCKAATRSVKCRRRAESVSH---GVVQKE-AFSSE-RGKYWSS 65
            +QR LQLSLRLS +LRS+P +HPL  FCKAATR+ K RRRA+  +    GV   E AFS++ RG++ +S
Sbjct: 1168 IQRCLQLSLRLSTKLRSLPSDHPLHSFCKAATRNFKRRRRADDPATRETGVRHPEGAFSTDGRGQFHNS 1236
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BLAST of mRNA_H-elongata_contig4707.11805.1 vs. uniprot
Match: A0A6H5JMZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.770e-7
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 0 
Query:    2 VQRYLQLSLRLSARLRSMPPEHPLQDFCKAATRSVKCRRRAE 43
            +QR LQLSLRLS +LRS+P +HPL +FCK ATR++K R+RA+
Sbjct:  637 IQRCLQLSLRLSTKLRSLPSDHPLHNFCKVATRNLKRRQRAD 678
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4707.11805.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF16_ECTSI2.010e-855.07PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JMZ7_9PHAE1.770e-764.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4707contigH-elongata_contig4707:4162..4425 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4707.11805.1mRNA_H-elongata_contig4707.11805.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4707 4139..4425 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4707.11805.1 ID=prot_H-elongata_contig4707.11805.1|Name=mRNA_H-elongata_contig4707.11805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MVQRYLQLSLRLSARLRSMPPEHPLQDFCKAATRSVKCRRRAESVSHGVV
QKEAFSSERGKYWSSLGNYRDQNDASKSKRFWGRAVAS
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