mRNA_H-elongata_contig11475.1177.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11475.1177.1
Unique NamemRNA_H-elongata_contig11475.1177.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11475.1177.1 vs. uniprot
Match: D8LF73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF73_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 2.630e-79
Identity = 150/317 (47.32%), Postives = 192/317 (60.57%), Query Frame = 1 
Query:    1 QFSVSFPSGIRRASSLTSSLALRLGPPPPTVLAPAQTVSLDEKDEDCGHCCGDQKTEDSSVVRCPECAMFLPRRNIVRHIRSTCRLVPCTLCGCLLLPASRELHVQETCRNRLQCCHHCCGKAMTMREFARHHLKEDCGHRAAPCSACEEICFADELQEHKASCQNLPRGSKITANSCPERELQCSSCGMGVPARKLPDHVAQLCPNLMWKCPCGKDSLPLAKRLDHLKKCDAFIDAWEASIEQVMISTHMEDPALALLALAESGGNASSAAKKIAHERHYLDELHLAVDTVNTRVFLESLQKPKKRGAGSLWRAGM 951
            +FSVSF SGIRRASSLT SL +RLGPP  ++    Q   + + + D      D+ ++   ++RCPECA  L    IV+HIRSTCRL+PCT C  LLLPA RE HV+E C NR + C  C G+A+ + EFARH  +  C  R  PC+AC + C ADEL+EH A                                          C N+ W C CG+    L++R  HLK C+AFIDAWEASIE+VMI+T +E+P LALLALAES GN S AA+++  ER Y++EL LA D VN  VFL++L KP KRG+G+LWRAG+
Sbjct:  644 EFSVSFSSGIRRASSLTPSLEVRLGPPKASL---EQVADVTDGNTD------DRASDGDGLIRCPECAELLRSSQIVQHIRSTCRLLPCTHCSRLLLPADRERHVEEACPNRRRSCMRC-GEAVVVSEFARHEAEGGCARRVVPCAACGDFCPADELREHGA-------------REXXXXXXXXXXXXXXXXXXXXXXXXXXXCRNMTWACGCGEGPFALSERPAHLKTCNAFIDAWEASIEKVMIATRVENPGLALLALAESRGNVSLAARRVTDERAYINELCLAADIVNVEVFLKALTKPGKRGSGALWRAGL 937
[Close]
BLAST of mRNA_H-elongata_contig11475.1177.1 vs. uniprot
Match: A0A6H5L7C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C1_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.960e-76
Identity = 149/333 (44.74%), Postives = 194/333 (58.26%), Query Frame = 1 
Query:    1 QFSVSFPSGIRRASSLTSSLALRLGPPPPTVLAPAQTVSLDEKDEDCGHCCGDQKTEDSSVVRCPECAMFLPRRNIVRHIRSTCRLVPCTLCGCLLLPASRELHVQETCRNRLQCCHHCCGKAMTMREFARHHLKEDCGHRAAPCSACEEICFADELQEHKASCQNLPRGSKITANSCPERELQCSSCGMGVPARKLPDHVAQLCPNLMWKCPCGKDSLPLAKRLDHLKKCDAFIDAWEASIEQV----------------MISTHMEDPALALLALAESGGNASSAAKKIAHERHYLDELHLAVDTVNTRVFLESLQKPKKRGAGSLWRAGM 951
            +FSVSFPSGIRRASSLT SL +RLGPP  ++    Q   + + + D      D+ ++   ++RCPECA  L    IV+HIRSTCRL+PCTLC  LLLPA RE HV+E C NR + C  C G+A+ + EFARH  +  C  R  P     + C AD+ +EH                            GM        +H + LC N+ W C CG+    L++R +HLK CDAFIDAWEASIE+V                MI+T +EDP +ALLALAES G+ S AA+++A +R Y+DEL LA D VN  VFL +L+KP KR +G+LW AG+
Sbjct:  419 EFSVSFPSGIRRASSLTPSLEVRLGPPKASL---EQVAGVTDGNTD------DRASDGDGLIRCPECAELLRSSQIVQHIRSTCRLLPCTLCSRLLLPADRERHVEEACPNRRRSCMRC-GEAVVVSEFARHEAEGGCARRVVPXXXXXDFCPADDFREH----------------------------GMA-------EHASSLCRNMTWACGCGEGPFALSERPEHLKTCDAFIDAWEASIEKVIARMPKIEVVRKIGKVMIATRVEDPGVALLALAESRGSVSLAARRVADKRAYIDELCLAADIVNVEVFLRALRKPGKRVSGALWCAGL 706
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11475.1177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF73_ECTSI2.630e-7947.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7C1_9PHAE1.960e-7644.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11475contigH-elongata_contig11475:5746..8631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.9
Seed ortholog evalue9.7e-71
Seed eggNOG ortholog2880.D8LF73
Preferred nameENAH
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionEPS15 homology (EH)
Ec32 orthologEc-06_001920.1
Exons5
Model size954
Cds size954
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11475.1177.1prot_H-elongata_contig11475.1177.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11475 5746..8631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.768561-CDS-H-elongata_contig11475:5745..58631622929663.768561-CDS-H-elongata_contig11475:5745..5863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11475 5746..5863 -
1691679110.6763139-CDS-H-elongata_contig11475:5745..58631691679110.6763139-CDS-H-elongata_contig11475:5745..5863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11475 5746..5863 -
1622929663.7845623-CDS-H-elongata_contig11475:6274..63781622929663.7845623-CDS-H-elongata_contig11475:6274..6378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11475 6275..6378 -
1691679110.686797-CDS-H-elongata_contig11475:6274..63781691679110.686797-CDS-H-elongata_contig11475:6274..6378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11475 6275..6378 -
1622929663.799298-CDS-H-elongata_contig11475:7065..72751622929663.799298-CDS-H-elongata_contig11475:7065..7275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11475 7066..7275 -
1691679110.704126-CDS-H-elongata_contig11475:7065..72751691679110.704126-CDS-H-elongata_contig11475:7065..7275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11475 7066..7275 -
1622929663.8137703-CDS-H-elongata_contig11475:7616..79501622929663.8137703-CDS-H-elongata_contig11475:7616..7950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11475 7617..7950 -
1691679110.7131608-CDS-H-elongata_contig11475:7616..79501691679110.7131608-CDS-H-elongata_contig11475:7616..7950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11475 7617..7950 -
1622929663.8295314-CDS-H-elongata_contig11475:8443..86311622929663.8295314-CDS-H-elongata_contig11475:8443..8631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11475 8444..8631 -
1691679110.7223592-CDS-H-elongata_contig11475:8443..86311691679110.7223592-CDS-H-elongata_contig11475:8443..8631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11475 8444..8631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11475.1177.1

>prot_H-elongata_contig11475.1177.1 ID=prot_H-elongata_contig11475.1177.1|Name=mRNA_H-elongata_contig11475.1177.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=318bp
QFSVSFPSGIRRASSLTSSLALRLGPPPPTVLAPAQTVSLDEKDEDCGHC
CGDQKTEDSSVVRCPECAMFLPRRNIVRHIRSTCRLVPCTLCGCLLLPAS
RELHVQETCRNRLQCCHHCCGKAMTMREFARHHLKEDCGHRAAPCSACEE
ICFADELQEHKASCQNLPRGSKITANSCPERELQCSSCGMGVPARKLPDH
VAQLCPNLMWKCPCGKDSLPLAKRLDHLKKCDAFIDAWEASIEQVMISTH
MEDPALALLALAESGGNASSAAKKIAHERHYLDELHLAVDTVNTRVFLES
LQKPKKRGAGSLWRAGM*
back to top

mRNA from alignment at H-elongata_contig11475:5746..8631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11475.1177.1 ID=mRNA_H-elongata_contig11475.1177.1|Name=mRNA_H-elongata_contig11475.1177.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2886bp|location=Sequence derived from alignment at H-elongata_contig11475:5746..8631- (Himanthalia elongata Himel1 dioecious)
CAGTTCAGCGTGTCGTTTCCGTCCGGAATCAGGCGTGCCTCGTCACTCAC
ATCGTCCCTTGCTCTTCGTTTGGGGCCGCCACCACCGACAGTGCTGGCAC
CAGCTCAAACAGTGAGCCTGGATGAAAAAGACGAAGATTGTGGTCATTGT
TGTGGTGATCAGAAGACCGAAGACTCCAGCGTGGTGAGGTCAGTAGGACA
TACTGGTATTATGTTGTTTTCTCGTGCCGCTTGCTGGTAGGACCTATGTA
TAAATATATATATATATATATAATACTGATAACTTGCTCGTTCATGGTAA
CACGCGCAAAGTTGGTTGAGTCGTAGTATGTAACGACTTCCTTGGCTGCG
ATGAGATGAGAGTACGGCCTCGCCCTAAAACGTGGCGGTAGTCCCAAACA
AGGGCTTTTGCAAACACATGGCAAATACTGTAAGTAATAACTCCTTCGTA
TGTAACACGTTAAAAAAAGAGCGATGAAACTCATAAATAACTGGTCGCTA
AGCCCCACCGGCGTCCAGTCTCGCATCAATAGAAAATTATTTTTTCGAGG
CGGAATAATATGCATCGTTACTAGACCTTTATAAGCCACGTTATTACCCG
GCACTGGAACCCCCCGTTTCCATAACGAGTACCTGGTACCTTTCGGAAGT
ACCCACTCCTGATCCGCCCCCCCCCCCGTAGGTGTCCAGAATGCGCCATG
TTCCTCCCGAGAAGAAACATCGTAAGACATATTCGATCTACCTGCCGGCT
AGTCCCGTGCACGCTCTGCGGGTGCCTGCTGCTGCCGGCTTCCAGGGAGT
TGCACGTTCAAGAGACGTGTCGTAATCGCTTACAATGCTGCCATCACTGC
TGCGGGAAGGCAATGACCATGAGGGAATTCGCGCGCCACCATCTGAAGGA
GGATTGTGGGCATCGGGCTGCTCCATGCTCGGCGTGCGAGGAAATATGTT
TTGCCGATGAGCTTCAGGAGCACAAGGCGAGCTGTCAAAACTTACCGCGG
GGCTCGAAAATTACCGTAGGAGGAGATAATCCCCGTGGTCAAGTTACTAA
AGGCGTTAACTCGTGCTGTAACACGGATCAGCGAGCCCACCCAGACGTCA
GCACATGTGCGTAATAGTTGGACTGAAACAAAGACAGAAAAACGACACCA
TCGTTTACCAAGCCACCCAAAACGATCACATCCCCTCCTGCTGAGGGACT
CTCCCAATCTTCAAGCGATGCTGCAGTGCGCAAATCGTAAAGCCAGTGGG
ATGTACACTTTTGGAACGCTACTTTGTATCAGCCGCATTATACCTGCGAG
AGGAGAGGAGTGTGAGAAGACGCCGATCGATGTGTCCACAACTTATCCCA
TTCCAGGCAAATTCCTGCCCCGAGCGGGAACTACAGTGTTCTTCCTGTGG
CATGGGGGTCCCAGCACGGAAGCTTCCGGATCACGTTGCACAACTTTGTC
CGAATTTGATGTGGAAATGCCCTTGTGGTAAGGACTCGCTGCCCCTCGCG
AAGAGACTCGACCATCTAAAGAAATGCGACGCATTTATTGACGCGTGGGA
GGCGTCCATCGAGCAGGTGAGCACGGCATTCGGAACGGACATTAATCCGG
GGATAACTTGCAGATGTTAGGCGATGACAACCAGCATATCTCCCATACGG
CTGCGGACGAATACTAATGTCGTCATTCCCGGGAAGCGAACGATCTTCTC
GTATCGGATGTTTTCTTATGACGACCTCAGCTACTGGCTTTGTGGGACCA
AACGCAGACCGACACACATTGATGTTATACTTTTTTACATGCTCACACGC
AGCGATCGAATCGACGTCTCATTTCTCGGAGGCCTTGTCCTTATCCCTAC
ACCCCGATCGGGCTTGTGGGTGAAATGTTCGTTCGCTACTACTCTCCTCC
ACAGGTTATTGCCCGAGCGCCCAAGATCGAAGTAATCCGTAATATTGGAA
AGGTATGTATGTGCGGTCGCACATTTAGCAGAAGATAACAATTAGTAAAT
CATGCTTATGATATTATACCCGATGTCGCGAACTGATGGAAGACAAGAGG
GCAGGGAAGGTTCATCGACCAATGGATTACGCATACCTTGAACTTAATTT
TGTCTCTCCCCGTCGCACTCTCTCCACCTCAACAATTTGCCCTGTCGTCG
GGTATAAGGTGCTTAGAAATCCCCCTCCTCCCCTCTCCCCTCCATGCGTA
TTTTGTCCATCCTCTTGAACAACCCTCGACCACATCTTTATCTATGAGTT
CAGGTGATGATCTCGACGCACATGGAAGATCCCGCCCTTGCGCTTTTGGC
GCTTGCTGAATCCGGAGGCAATGCGTCCTCAGCGGCGAAAAAAATCGCGC
ATGAGAGGTAAGACTATTATTAGTACAACACGCGCCGATTTGGTCGAAAA
CACGCGCCGATCCCACCATTTACTTTGGTACCTTCCCCGAAGCCAGGTGA
CCGAGCATAAGGCTTTTATGGCGGAGCGGATATGTGTAGCGCTTGATCGC
CGCGCGGGCTCACGCGCTCGTTCGCCTTCGTTTCAGCGCGGTAATATTAT
CCTGAAGATCGATGGCTCGTTGCAGGACAGAGACGCCCGGTGATCCTACT
TCAAGAGTGTGGCGCCGGTTTACGTCAACGCGCCGTGTATGCAAGTTTGG
GTTTAGGCGCTTTTGCTCTTTCTTGCTTTTCGCCACAAGCGCGCCCAAGG
ATTTCCGCGCGACCCTTCTTGAGTCCCGAAGGCTGCACGATCCTTGTTGC
TCCCGGACGGCTTCGCAGGCACTACCTGGACGAGCTGCACCTCGCCGTTG
ATACCGTCAATACCAGGGTTTTCCTAGAGTCACTCCAGAAGCCGAAGAAG
AGAGGCGCGGGGTCTCTCTGGCGAGCGGGGATGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11475:5746..8631-

>mRNA_H-elongata_contig11475.1177.1 ID=mRNA_H-elongata_contig11475.1177.1|Name=mRNA_H-elongata_contig11475.1177.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1908bp|location=Sequence derived from alignment at H-elongata_contig11475:5746..8631- (Himanthalia elongata Himel1 dioecious)
CAGTTCAGCGTGTCGTTTCCGTCCGGAATCAGGCGTGCCTCGTCACTCAC
ATCGTCCCTTGCTCTTCGTTTGGGGCCGCCACCACCGACAGTGCTGGCAC
CAGCTCAAACAGTGAGCCTGGATGAAAAAGACGAAGATTGTGGTCATTGT
TGTGGTGATCAGAAGACCGAAGACTCCAGCGTGGTGAGCAGTTCAGCGTG
TCGTTTCCGTCCGGAATCAGGCGTGCCTCGTCACTCACATCGTCCCTTGC
TCTTCGTTTGGGGCCGCCACCACCGACAGTGCTGGCACCAGCTCAAACAG
TGAGCCTGGATGAAAAAGACGAAGATTGTGGTCATTGTTGTGGTGATCAG
AAGACCGAAGACTCCAGCGTGGTGAGGTGTCCAGAATGCGCCATGTTCCT
CCCGAGAAGAAACATCGTAAGACATATTCGATCTACCTGCCGGCTAGTCC
CGTGCACGCTCTGCGGGTGCCTGCTGCTGCCGGCTTCCAGGGAGTTGCAC
GTTCAAGAGACGTGTCGTAATCGCTTACAATGCTGCCATCACTGCTGCGG
GAAGGCAATGACCATGAGGGAATTCGCGCGCCACCATCTGAAGGAGGATT
GTGGGCATCGGGCTGCTCCATGCTCGGCGTGCGAGGAAATATGTTTTGCC
GATGAGCTTCAGGAGCACAAGGCGAGCTGTCAAAACTTACCGCGGGGCTC
GAAAATTACCGTGTCCAGAATGCGCCATGTTCCTCCCGAGAAGAAACATC
GTAAGACATATTCGATCTACCTGCCGGCTAGTCCCGTGCACGCTCTGCGG
GTGCCTGCTGCTGCCGGCTTCCAGGGAGTTGCACGTTCAAGAGACGTGTC
GTAATCGCTTACAATGCTGCCATCACTGCTGCGGGAAGGCAATGACCATG
AGGGAATTCGCGCGCCACCATCTGAAGGAGGATTGTGGGCATCGGGCTGC
TCCATGCTCGGCGTGCGAGGAAATATGTTTTGCCGATGAGCTTCAGGAGC
ACAAGGCGAGCTGTCAAAACTTACCGCGGGGCTCGAAAATTACCGCAAAT
TCCTGCCCCGAGCGGGAACTACAGTGTTCTTCCTGTGGCATGGGGGTCCC
AGCACGGAAGCTTCCGGATCACGTTGCACAACTTTGTCCGAATTTGATGT
GGAAATGCCCTTGTGGTAAGGACTCGCTGCCCCTCGCGAAGAGACTCGAC
CATCTAAAGAAATGCGACGCATTTATTGACGCGTGGGAGGCGTCCATCGA
GCAGGCAAATTCCTGCCCCGAGCGGGAACTACAGTGTTCTTCCTGTGGCA
TGGGGGTCCCAGCACGGAAGCTTCCGGATCACGTTGCACAACTTTGTCCG
AATTTGATGTGGAAATGCCCTTGTGGTAAGGACTCGCTGCCCCTCGCGAA
GAGACTCGACCATCTAAAGAAATGCGACGCATTTATTGACGCGTGGGAGG
CGTCCATCGAGCAGGTGATGATCTCGACGCACATGGAAGATCCCGCCCTT
GCGCTTTTGGCGCTTGCTGAATCCGGAGGCAATGCGTCCTCAGCGGCGAA
AAAAATCGCGCATGAGAGGTGATGATCTCGACGCACATGGAAGATCCCGC
CCTTGCGCTTTTGGCGCTTGCTGAATCCGGAGGCAATGCGTCCTCAGCGG
CGAAAAAAATCGCGCATGAGAGGCACTACCTGGACGAGCTGCACCTCGCC
GTTGATACCGTCAATACCAGGGTTTTCCTAGAGTCACTCCAGAAGCCGAA
GAAGAGAGGCGCGGGGTCTCTCTGGCGAGCGGGGATGTAGGCACTACCTG
GACGAGCTGCACCTCGCCGTTGATACCGTCAATACCAGGGTTTTCCTAGA
GTCACTCCAGAAGCCGAAGAAGAGAGGCGCGGGGTCTCTCTGGCGAGCGG
GGATGTAG
back to top