mRNA_H-elongata_contig4655.11750.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4655.11750.1
Unique NamemRNA_H-elongata_contig4655.11750.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4655.11750.1 vs. uniprot
Match: A0A6H5KNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU8_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.510e-19
Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 2 
Query:  329 VSQESSQMIKGVDDISEAELRELASWFRARSGERRRLLKRYRAGRVKTEALAARKQAGGDMFASARGNKLPLKSASCRSTNSD 577
            VS +SS M +GV+DI E +LRELA WF++RS ERRRLLKRY+ GR KTEALAARKQAGGD+FAS RG K+P K    R+  SD
Sbjct: 2434 VSLDSSLMPRGVEDIPEKDLRELAKWFKSRSSERRRLLKRYKTGRQKTEALAARKQAGGDVFASVRG-KIPTKGGLARTPTSD 2515
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4655.11750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNU8_9PHAE2.510e-1966.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4655contigH-elongata_contig4655:4853..7972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_004170.1
Hectar predicted targeting categoryother localisation
Exons6
Model size900
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4655.11750.1prot_H-elongata_contig4655.11750.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4655 6655..7865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930770.5821383-UTR-H-elongata_contig4655:4852..49741622930770.5821383-UTR-H-elongata_contig4655:4852..4974Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4655 4853..4974 +
1691679562.4582877-UTR-H-elongata_contig4655:4852..49741691679562.4582877-UTR-H-elongata_contig4655:4852..4974Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4655 4853..4974 +
1622930770.5933077-UTR-H-elongata_contig4655:5829..59011622930770.5933077-UTR-H-elongata_contig4655:5829..5901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4655 5830..5901 +
1691679562.471164-UTR-H-elongata_contig4655:5829..59011691679562.471164-UTR-H-elongata_contig4655:5829..5901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4655 5830..5901 +
1622930770.6081266-UTR-H-elongata_contig4655:6107..62411622930770.6081266-UTR-H-elongata_contig4655:6107..6241Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4655 6108..6241 +
1691679562.479667-UTR-H-elongata_contig4655:6107..62411691679562.479667-UTR-H-elongata_contig4655:6107..6241Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4655 6108..6241 +
1622930770.6218815-UTR-H-elongata_contig4655:6633..66541622930770.6218815-UTR-H-elongata_contig4655:6633..6654Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4655 6634..6654 +
1691679562.4882457-UTR-H-elongata_contig4655:6633..66541691679562.4882457-UTR-H-elongata_contig4655:6633..6654Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4655 6634..6654 +
1622930770.6820762-UTR-H-elongata_contig4655:7865..79721622930770.6820762-UTR-H-elongata_contig4655:7865..7972Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4655 7866..7972 +
1691679562.5229058-UTR-H-elongata_contig4655:7865..79721691679562.5229058-UTR-H-elongata_contig4655:7865..7972Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4655 7866..7972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930770.6334832-CDS-H-elongata_contig4655:6654..68011622930770.6334832-CDS-H-elongata_contig4655:6654..6801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4655 6655..6801 +
1691679562.498588-CDS-H-elongata_contig4655:6654..68011691679562.498588-CDS-H-elongata_contig4655:6654..6801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4655 6655..6801 +
1622930770.6477396-CDS-H-elongata_contig4655:7274..73581622930770.6477396-CDS-H-elongata_contig4655:7274..7358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4655 7275..7358 +
1691679562.5066378-CDS-H-elongata_contig4655:7274..73581691679562.5066378-CDS-H-elongata_contig4655:7274..7358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4655 7275..7358 +
1622930770.6630952-CDS-H-elongata_contig4655:7652..78651622930770.6630952-CDS-H-elongata_contig4655:7652..7865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4655 7653..7865 +
1691679562.514596-CDS-H-elongata_contig4655:7652..78651691679562.514596-CDS-H-elongata_contig4655:7652..7865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4655 7653..7865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4655.11750.1

>prot_H-elongata_contig4655.11750.1 ID=prot_H-elongata_contig4655.11750.1|Name=mRNA_H-elongata_contig4655.11750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MIKGVDDISEAELRELASWFRARSGERRRLLKRYRAGRVKTEALAARKQA
GGDMFASARGNKLPLKSASCRSTNSDAGSVNSVRSERNGAVASNLSRPMV
RLEVGDGRGGRGNRGGGDTNRFKVPGPRDRPVSPRVPAAIGGRPGWV*
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mRNA from alignment at H-elongata_contig4655:4853..7972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4655.11750.1 ID=mRNA_H-elongata_contig4655.11750.1|Name=mRNA_H-elongata_contig4655.11750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3120bp|location=Sequence derived from alignment at H-elongata_contig4655:4853..7972+ (Himanthalia elongata Himel1 dioecious)
AGGTAAAACTCGATGACGCCGAGGAAGCGAAGGAAAATCTGTCACGCCTG
GCAGAAGAGCAGCAGGAGCAGATCGACAGGCTCAAGAGGAGGGCCAAGCG
TAAGGAGGACGAGATCACAAAGGTGGGCTTCAATAATGAGGAAAGAAAGC
CCCCTCCCCCTCCCCTCCGTCGCGTATAATATTTTCAGGCAGTCCGGGCA
CCACTGACGTATGATTCACTTCACCTACTATATGCATATTTTGCAATATA
TTTTTTGCGACGTATTATTATTGAAAAACGTATGAACTCATTCCAACACT
CCACTTCTTCCCACCGTGAGAGGTGCAGTGCAGGGGACCATGTTTTTGCG
AAAGGCGTGTGTGGGGGGGGGAATCGGGATCGTTTTTCTGCTGCCGTTCG
ATATGCGAGCAATGCTTCGCTTTTTCGGAAATGCACAACACAGAAATAAG
AGGCATATTCTCTACCGTATCATACAGACTTTCCTTACTTCCGTAAACGC
CCTTTTGGTAGGGTAGCCCCTCCCTCCCTTCCTCCCTCCCCCCACTCCCC
TTCCCTCCCGTACCTTTGATTTCTACAATTATGCTTTTTGAAGTGAGATT
TTATTAGTAAGCACAAATATTTCCTGAGATATGTCGACTACAAATAGTTG
CCAATAACCTTTTCTCTATATTTATATAACTGTTTTTTTTTTTTCCTTGA
CACTGTCTACTGCTGTATACATTTATAAGAGAAGTCTGGACGTGTATGTA
ACGCAACCTGCTCGATCAGGATACGGGGGGTTGGGCGATTTGGGGGGCAT
TTAAAGACTAAATAATGATCGATGCTCTCGGGATCAAGAGACAGAAACAC
ATCAGGAGACATAAACCTTCCCCCCTCCCCCTCCCCCTCCTTCCTCCGAC
ACCTCAAATATAGAACATAAATAATCTGAAGTAATGTGGGATGTCTCTCC
CCTATTCTCTGTTTCGCGGTGCGGCAGACGGTTCTGACAAGACTTCAAGC
TCAGGAGGGTTCCGCGATCGACTCCGACGGCCCCAGCGGCCCGCTCGAGG
TATAGGACTAGGCTGGCTGCAGCACCAGCGAGGCTGTATGTCTGGAATGT
TCCGAGGCAGGATTCATCTAGATATAGCCGTCTCTTGTCTCCACTATCTT
CCTTTTGCCGTCTCTTGTCGTCATCGCTGTTGTGATGGAGTAATATTTGT
ATAATATGTATAATATGTCTAATTCTATTGTTTCGTTTTCCCTGCGTCGG
TCTAGGCTGAGAGAAAGATGCTGAGGCGTACTTGCCAGAGGCAGGAACAG
CAGGTTACTGATCTGCGCAAGCTCGTCGAGGAGATCGCCAAGCTGGAGCA
AGGAGCACCCGATGTCGCAAGCGAGGCCAAGTGGGAGACGCTCTCCGTCT
GCTCCAGCGTCAGCGGGGTGCGATACAGTAGGAGGTTGTTGTTGTTGCTG
CTGCTGCTGCTGTTATATGATAGATGATAACTGTCCCAGGCAATTTACAC
CACGGTACTACGCTGCGCAGAGCAGTACGATAGCTGTCGGTAGATGTACG
ATCTTCCGCTGACGATTTTGTTTTGTTTTTCTGAAAAATAGCGGGCTTCG
ACTGAGTAAAGTATCTGTTCCCAGTGATGAGATGTTATGGGATGTTATGG
AATGGGAGCTGCGACGGGACAAGGGAGAATATTATGTATATTTGACTGGT
GACCTTTGCGCTATACCTCACCACTGCGCAGATGTATCATGTATCATGCT
ATAATATAATATAATATAATTGACGGGGCAGGTGAGCCAAGAGAGCTCCC
AAATGATCAAGGGCGTCGACGATATCTCCGAGGCGGAGCTGCGTGAGCTG
GCGAGTTGGTTCCGGGCGAGGTCGGGCGAGCGCCGTCGCCTCCTTAAGAG
ATACAGGGCCGGCCGCGTAAAGACAGAAGCTCTCGCTGCCAGGAAGCAGG
TGGGACGATTCTTGGTTCGCTCGGTGTTGTTGTTAGTGCAGTGAATACTA
GTGCGGTCGGTAGGTGACTGTGTAGTCGGTCTCCCTCCCTCTCTGGAGAG
GCAACCCAGGTGGGCGGGAGGGCGAGCGGCGTATACCACTTTGAGGTATT
CGCAGAACCAGTCCCATTTCCTTGTGGCGGTGGTAGATTTTCCACGACCC
GGTAAACGGCACGGCAACACACGAGCGAGGGAGCGGGTAACCGATGCTGG
CAAGCGCGAATGGTTAGGGACAAGAGGAGCTCGTGTCATAAATGGCCTCC
AGATAATTTTCTTCTGGGCGCAGCACGAGACGGTCTGAACGCGCTTCTTT
ATTGCTCCGATGGTGTCGGTTGGGTTTTGATGCAAGAGTTGAGGCGAAAC
TTTCTGCGTCCTGGTCTTCGATCACCCGCAAGCGACATTTTGTGTTTTTC
TGTCTCGTTCGCACTCTCCAAGGCCGGCGGCGACATGTTCGCGTCTGCGA
GGGGGAACAAGCTGCCGCTCAAAAGCGCGTCATGCCGCTCCACCAACTCT
GACGCGGTGAGTACGGCGAATTGTTTCATGCGGCGGTACAGTGTCCCGAT
CTATCTCCACCCGTGGACAACGTCTTTCTTTCTCGGGTTTGTGGAGATAT
TATGTCATTCTTCATTCTGTCGAGTATCGGGCGATTAGAGAGCCTCGCGC
GCCGTTTTCTCGCCACCGTTCGACGTCGCTCTACATCACCCACTGCTGTG
TGTTGTTTAACGTCTTCTAAACACCCCTCTTCCCGCAATGCGCAACGCGC
GGGGTTGTTGACGCATACTGGGACGATTCACGTTATACCACCGTTAACAG
GGTTCAGTTAATTCTGTGCGCTCGGAACGCAACGGAGCTGTCGCCAGTAA
TCTTAGTCGCCCTATGGTGAGATTGGAGGTTGGAGACGGTCGGGGTGGCA
GGGGTAACAGGGGCGGCGGCGACACCAACCGTTTCAAAGTTCCAGGGCCT
CGCGATCGCCCTGTTTCTCCAAGGGTACCCGCAGCGATCGGCGGTCGCCC
TGGGTGGGTATGACAGCTGGGGTCTGTGCTTGGATCGGGATCTCGCATGG
CGTTTCTGCCGCTGTTGCATAATGCTTACGCGGGGTGCAATGCTTCCTCC
GTCTCACTCGATTTTGGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig4655:4853..7972+

>mRNA_H-elongata_contig4655.11750.1 ID=mRNA_H-elongata_contig4655.11750.1|Name=mRNA_H-elongata_contig4655.11750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig4655:4853..7972+ (Himanthalia elongata Himel1 dioecious)
ATGATCAAGGGCGTCGACGATATCTCCGAGGCGGAGCTGCGTGAGCTGGC
GAGTTGGTTCCGGGCGAGGTCGGGCGAGCGCCGTCGCCTCCTTAAGAGAT
ACAGGGCCGGCCGCGTAAAGACAGAAGCTCTCGCTGCCAGGAAGCAGATG
ATCAAGGGCGTCGACGATATCTCCGAGGCGGAGCTGCGTGAGCTGGCGAG
TTGGTTCCGGGCGAGGTCGGGCGAGCGCCGTCGCCTCCTTAAGAGATACA
GGGCCGGCCGCGTAAAGACAGAAGCTCTCGCTGCCAGGAAGCAGGCCGGC
GGCGACATGTTCGCGTCTGCGAGGGGGAACAAGCTGCCGCTCAAAAGCGC
GTCATGCCGCTCCACCAACTCTGACGCGGCCGGCGGCGACATGTTCGCGT
CTGCGAGGGGGAACAAGCTGCCGCTCAAAAGCGCGTCATGCCGCTCCACC
AACTCTGACGCGGGTTCAGTTAATTCTGTGCGCTCGGAACGCAACGGAGC
TGTCGCCAGTAATCTTAGTCGCCCTATGGTGAGATTGGAGGTTGGAGACG
GTCGGGGTGGCAGGGGTAACAGGGGCGGCGGCGACACCAACCGTTTCAAA
GTTCCAGGGCCTCGCGATCGCCCTGTTTCTCCAAGGGTACCCGCAGCGAT
CGGCGGTCGCCCTGGGTGGGTATGAGGTTCAGTTAATTCTGTGCGCTCGG
AACGCAACGGAGCTGTCGCCAGTAATCTTAGTCGCCCTATGGTGAGATTG
GAGGTTGGAGACGGTCGGGGTGGCAGGGGTAACAGGGGCGGCGGCGACAC
CAACCGTTTCAAAGTTCCAGGGCCTCGCGATCGCCCTGTTTCTCCAAGGG
TACCCGCAGCGATCGGCGGTCGCCCTGGGTGGGTATGA
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