prot_H-elongata_contig46475.11742.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46475.11742.1
Unique Nameprot_H-elongata_contig46475.11742.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length187
Homology
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: D7FMT8_ECTSI (Oxa1-like homolog, mitochondrial inner membrane insertase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT8_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 4.370e-54
Identity = 92/133 (69.17%), Postives = 103/133 (77.44%), Query Frame = 0
Query:    2 ATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELAKMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRP 134
            ATPL+NLPVFI FVWSIR MLRD +VPGL+TG          +  SLMLP+I T  TYT LE+ KMKGATGW+K+FQDGMQTF+ILMLPW STFPQGVFMYWIPS+VFQ  QT  MK + VR LLGLKPL  P
Sbjct:  107 ATPLVNLPVFITFVWSIRGMLRDGTVPGLDTGEA-------DTVHSLMLPIIGTLCTYTSLEIVKMKGATGWMKFFQDGMQTFIILMLPWVSTFPQGVFMYWIPSAVFQMGQTYTMKNNKVRELLGLKPLGLP 232          
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A6H5JKU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU0_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 7.270e-44
Identity = 89/157 (56.69%), Postives = 102/157 (64.97%), Query Frame = 0
Query:    2 ATPLINLPVFIMFVWSIRSMLRDSSVPGLNTG------------GTLWFVDLTVSDSSLMLPVISTALTYTGLELAKMKGATGWLKWFQDGMQTFMILMLP--WTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPEAPNTAA 144
            ATPL+NLPVFI FVWSIR MLRD + PGL+TG            G LWFVDLTV DSSLMLP+I T  TYT LE+ KMKGATGW+K     ++   +   P  +T    QGVFMYWIPSS+FQ  QT  MK + VR LLGLKPL  P   +A  T A
Sbjct:  140 ATPLVNLPVFITFVWSIRGMLRDGTAPGLDTGEAVTVAPATKLGGILWFVDLTVPDSSLMLPIIGTLCTYTSLEIVKMKGATGWIK-----LERLAVTPSPRLFTRRHDQGVFMYWIPSSLFQMGQTYTMKNNKVRELLGLKPLGLPPREDAGATPA 291          
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: W7U431_9STRA (Mitochondrial inner membrane protein oxa1l n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U431_9STRA)

HSP 1 Score: 107 bits (266), Expect = 5.600e-24
Identity = 58/128 (45.31%), Postives = 81/128 (63.28%), Query Frame = 0
Query:    2 ATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLEL--AKMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLG 127
            A+P++ LPVF+ F  + R M+ D  VPGL  GG  WF DLT +D  L+LPV+    TY  LEL  A++  +   L++ +D +Q F+IL  P +ST P GVF+YW  SSV+   Q  A++  DVR+LLG
Sbjct:  201 ASPIVQLPVFVTFALANRRMI-DQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLG 327          
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A7S4D5S6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5S6_HETAK)

HSP 1 Score: 97.8 bits (242), Expect = 1.250e-22
Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 0
Query:   21 MLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELA--------KMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAP 137
            +L+   +PGL+ GG LWF DL  +D +L LP+ +  LTY  LEL         + K   G  +  +  MQ ++I   P+    P GVFMYWIPSS+F +CQ + ++++ +R +LGL P+ RP +P
Sbjct:    2 ILQGGQLPGLDCGGALWFSDLAAADPTLALPIAALGLTYANLELGFGRFRGHGEKKEDGGLPEKIKSMMQVYLIWSFPFIMQLPAGVFMYWIPSSLFGSCQVVLLRQNPIREMLGLPPIARPFSP 126          
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A3P3YDN5_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YDN5_PLABS)

HSP 1 Score: 96.7 bits (239), Expect = 1.000e-20
Identity = 55/146 (37.67%), Postives = 84/146 (57.53%), Query Frame = 0
Query:    4 PLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELAKMKGATG------WLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLG--LKPLRRPAAPEAPN 141
            P++ LP FI+F+ S+R+ L     P + TGG  WF +L++ DS+ +LPV++ +L+Y  +E+   + A         + WFQ GM    IL LP+ S  P G+FMYWIP+S++   QT  +    +R  LG  ++PLR P    A N
Sbjct:  170 PVVQLPAFIVFISSLRTCLTTD--PAMATGGAFWFTNLSMRDSTFVLPVVAISLSYVAVEMVLRRHANRDHPVVKVVGWFQTGM----ILSLPFVSLIPSGIFMYWIPTSLWTIAQTHLLHTPAIRQWLGYPVEPLRTPTVVAATN 309          
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A7S3H9D9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9D9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.140e-20
Identity = 55/138 (39.86%), Postives = 78/138 (56.52%), Query Frame = 0
Query:    4 PLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELA-KMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPEAP 140
            PL+N+ VF+ FV+S+R +L  +    L  GGTLWFVDL   D++  LP  +  LTY GLELA +           +D  Q+ +IL LP+ +  P GVF YWIPSS+F   Q+  +K    + L  +  +  PA  +AP
Sbjct:  163 PLMNIGVFMTFVYSVRDLLLKTQDYSLLDGGTLWFVDLASKDATFGLPFAALGLTYLGLELAFRQNSQDNLFSRLKDYGQSGIILFLPFVTQLPAGVFCYWIPSSIFAITQSQILKGPYAQKLFNIPDIAPPAHMQAP 300          
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A0E9NH30_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NH30_SAICN)

HSP 1 Score: 94.4 bits (233), Expect = 2.380e-19
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 0
Query:    4 PLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELAKMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPE 138
            P + +PV + F  ++R+M  D  VPG  TGGT WF+DLT +D  + LP IS ALT + L +    G     K   +  Q   +L++P+ +  P  VF YW+P++ F   QT+ ++  +VR  L +  L +P AP+
Sbjct:  242 PALQIPVMMSFFLALRAM-ADLPVPGFQTGGTHWFLDLTAADPYVALPCISAALTISSLRMGSEVGHNTNTKAMINVFQLLAVLVIPFVANLPAAVFAYWVPNAAFSVIQTVLLRNPNVRKKLHIPALPKPPAPK 375          
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A3L6UX27_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UX27_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.920e-19
Identity = 51/146 (34.93%), Postives = 83/146 (56.85%), Query Frame = 0
Query:    2 ATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLEL---AKMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPEAPNTAA 144
            ATPL+ +P F++  +S R ++R   V GL+TGG   F +L  +DS+ +LP ++   TY   EL   +K+K     L+  ++  Q   +L  P+    PQG+F YW+ SS     QT+A+++  +R  LGLK +  P A  +P+ +A
Sbjct:   10 ATPLVQIPTFLLMAYSTRELVRSGKVDGLDTGGVWLFQNLVEADSTFILPALAVGCTYLNFELMGTSKIK----LLQSLKNKFQYIPLLSFPFICQIPQGIFFYWLASSWCSFAQTMALRQPSIRRALGLKDV--PTATTSPSISA 149          
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A024TNQ9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNQ9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.300e-18
Identity = 53/155 (34.19%), Postives = 82/155 (52.90%), Query Frame = 0
Query:    2 ATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELAKMKGATGWLKWFQ---DGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPEAPNTAAAGQGLSSKP 153
            ATPL+ +P F++  +S R ++R   V GL+TGG   F +L  +D +L+LP ++   TY   EL      T  +K  Q   D  Q   +L  P+    PQG+F YW+ SS     QT+A+++  +R  LGL+ +   +   AP  ++A   L S P
Sbjct:  161 ATPLLQIPTFLLMAYSTRELVRSGRVEGLDTGGVWMFQNLVEADGTLILPALAVGCTYLNFELM----GTSKVKLIQALKDKFQYIPLLSFPFICQMPQGIFFYWLASSWCSFAQTMALRQPSIRRALGLRDITASSLAAAPVPSSANSLLPSAP 311          
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: W4G8S7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8S7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.370e-18
Identity = 51/146 (34.93%), Postives = 83/146 (56.85%), Query Frame = 0
Query:    2 ATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLEL---AKMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPEAPNTAA 144
            ATPL+ +P F++  +S R ++R   V GL+TGG   F +L  +DS+ +LP ++   TY   EL   +K+K     L+  ++  Q   +L  P+    PQG+F YW+ SS     QT+A+++  +R  LGLK +  P A  +P+ +A
Sbjct:  164 ATPLVQIPTFLLMAYSTRELVRSGKVDGLDTGGVWLFQNLVEADSTFILPALAVGCTYLNFELMGTSKIK----LLQSLKNKFQYIPLLSFPFICQIPQGIFFYWLASSWCSFAQTMALRQPSIRRALGLKDV--PTATASPSISA 303          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMT8_ECTSI4.370e-5469.17Oxa1-like homolog, mitochondrial inner membrane in... [more]
A0A6H5JKU0_9PHAE7.270e-4456.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7U431_9STRA5.600e-2445.31Mitochondrial inner membrane protein oxa1l n=2 Tax... [more]
A0A7S4D5S6_HETAK1.250e-2239.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3P3YDN5_PLABS1.000e-2037.67Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A7S3H9D9_9STRA1.140e-2039.86Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0E9NH30_SAICN2.380e-1936.30Uncharacterized protein n=1 Tax=Saitoella complica... [more]
A0A3L6UX27_9STRA3.920e-1934.93Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A024TNQ9_9STRA2.300e-1834.19Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
W4G8S7_9STRA6.370e-1834.93Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001708Membrane insertase YidC/ALB3/OXA1/COX18PFAMPF0209660KD_IMPcoord: 4..119
e-value: 5.5E-10
score: 39.4
IPR001708Membrane insertase YidC/ALB3/OXA1/COX18PANTHERPTHR12428OXA1coord: 3..142
NoneNo IPR availablePANTHERPTHR12428:SF34CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX18, MITOCHONDRIALcoord: 3..142
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 83..104
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 105..186
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 63..82
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 5..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46475contigH-elongata_contig46475:276..2517 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46475.11742.1mRNA_H-elongata_contig46475.11742.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46475 256..2581 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46475.11742.1 ID=prot_H-elongata_contig46475.11742.1|Name=mRNA_H-elongata_contig46475.11742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
MATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLML
PVISTALTYTGLELAKMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVF
MYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPEAPNTAAAGQGLS
SKPPQGVLTAGDSTKGGTPESGFQPSSVSGRAVGPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001708YidC/ALB3/OXA1/COX18