mRNA_H-elongata_contig46431.11735.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46431.11735.1
Unique NamemRNA_H-elongata_contig46431.11735.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46431.11735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46431contigH-elongata_contig46431:2218..3303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1086
Cds size1086
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.0389476-CDS-H-elongata_contig46431:2217..33031622930769.0389476-CDS-H-elongata_contig46431:2217..3303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46431 2218..3303 -
1691679561.8037298-CDS-H-elongata_contig46431:2217..33031691679561.8037298-CDS-H-elongata_contig46431:2217..3303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46431 2218..3303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46431.11735.1prot_H-elongata_contig46431.11735.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46431 2218..3303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46431.11735.1

>prot_H-elongata_contig46431.11735.1 ID=prot_H-elongata_contig46431.11735.1|Name=mRNA_H-elongata_contig46431.11735.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=362bp
MPRNADLCGKAARVGNVGALRCARRHGCPLSARIGSRTINACDEAASEGH
LGALQWARVNGCPWDAQTSSKAAAGGHLRVLMWAQICGCPWDAWTCAKAA
ENGHMIVLKWSRSNGCPWDGTTCSGAAAGGHLRLLQWAHANGCPWDGRTC
AEAALAGHLDILQWARANGCPWSLTTSYRAAERGQLDTLKWARANGCPYD
SSMCYNAAFKGHLKVIRWARAINCPWDTYTCCKAAEGGHLNILRWARMNG
CPWDSKTCAGAAKGGHLHILQWAFANGCPWDAKTSVGAASEGHLEVLQWA
RANGCPWTKFVCAQAAAGGHIDVLKWARANGCPWDETTIAWAKREERMAI
VAWARKNGCPE*
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mRNA from alignment at H-elongata_contig46431:2218..3303-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46431.11735.1 ID=mRNA_H-elongata_contig46431.11735.1|Name=mRNA_H-elongata_contig46431.11735.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1086bp|location=Sequence derived from alignment at H-elongata_contig46431:2218..3303- (Himanthalia elongata Himel1 dioecious)
ATGCCTCGGAATGCAGATCTCTGCGGGAAAGCCGCCCGCGTGGGAAACGT
GGGGGCGCTACGGTGTGCGCGGAGGCATGGCTGTCCGCTGAGCGCAAGAA
TCGGCTCGCGTACCATTAATGCATGTGACGAGGCAGCATCTGAAGGGCAT
CTGGGCGCTCTTCAGTGGGCACGGGTGAACGGTTGCCCCTGGGATGCGCA
GACCTCCAGCAAGGCCGCGGCAGGGGGACACCTCCGCGTCCTAATGTGGG
CGCAAATATGTGGCTGCCCGTGGGACGCGTGGACATGCGCAAAGGCTGCG
GAGAACGGCCACATGATCGTCCTCAAGTGGTCGCGATCGAATGGTTGTCC
TTGGGACGGTACCACTTGCAGCGGTGCTGCTGCCGGAGGACACCTGCGTC
TGCTGCAGTGGGCCCACGCGAATGGTTGCCCCTGGGATGGAAGAACATGC
GCCGAGGCTGCCTTGGCTGGTCACCTTGACATTCTCCAATGGGCTCGGGC
TAATGGCTGCCCTTGGAGCTTGACGACTTCGTACAGGGCTGCTGAACGTG
GTCAGTTGGACACTTTGAAGTGGGCGCGTGCTAATGGCTGCCCCTATGAC
TCAAGCATGTGCTACAATGCTGCTTTCAAAGGGCACTTGAAAGTTATCCG
ATGGGCGCGAGCTATCAACTGCCCTTGGGACACGTATACGTGCTGCAAGG
CTGCCGAAGGAGGGCATCTGAATATTCTTAGATGGGCTCGAATGAATGGC
TGTCCTTGGGACTCCAAGACATGCGCTGGAGCTGCCAAAGGAGGTCACCT
CCATATCCTCCAATGGGCATTTGCCAACGGCTGTCCCTGGGACGCCAAGA
CATCTGTGGGGGCTGCCAGCGAAGGTCACCTTGAGGTTCTTCAATGGGCG
AGAGCAAACGGCTGTCCATGGACTAAATTTGTCTGCGCACAAGCTGCCGC
AGGAGGACACATCGACGTCCTTAAGTGGGCAAGGGCAAACGGCTGTCCGT
GGGACGAGACGACGATTGCTTGGGCAAAGCGCGAGGAACGCATGGCGATA
GTCGCTTGGGCACGGAAGAATGGATGTCCGGAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig46431:2218..3303-

>mRNA_H-elongata_contig46431.11735.1 ID=mRNA_H-elongata_contig46431.11735.1|Name=mRNA_H-elongata_contig46431.11735.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2172bp|location=Sequence derived from alignment at H-elongata_contig46431:2218..3303- (Himanthalia elongata Himel1 dioecious)
ATGCCTCGGAATGCAGATCTCTGCGGGAAAGCCGCCCGCGTGGGAAACGT
GGGGGCGCTACGGTGTGCGCGGAGGCATGGCTGTCCGCTGAGCGCAAGAA
TCGGCTCGCGTACCATTAATGCATGTGACGAGGCAGCATCTGAAGGGCAT
CTGGGCGCTCTTCAGTGGGCACGGGTGAACGGTTGCCCCTGGGATGCGCA
GACCTCCAGCAAGGCCGCGGCAGGGGGACACCTCCGCGTCCTAATGTGGG
CGCAAATATGTGGCTGCCCGTGGGACGCGTGGACATGCGCAAAGGCTGCG
GAGAACGGCCACATGATCGTCCTCAAGTGGTCGCGATCGAATGGTTGTCC
TTGGGACGGTACCACTTGCAGCGGTGCTGCTGCCGGAGGACACCTGCGTC
TGCTGCAGTGGGCCCACGCGAATGGTTGCCCCTGGGATGGAAGAACATGC
GCCGAGGCTGCCTTGGCTGGTCACCTTGACATTCTCCAATGGGCTCGGGC
TAATGGCTGCCCTTGGAGCTTGACGACTTCGTACAGGGCTGCTGAACGTG
GTCAGTTGGACACTTTGAAGTGGGCGCGTGCTAATGGCTGCCCCTATGAC
TCAAGCATGTGCTACAATGCTGCTTTCAAAGGGCACTTGAAAGTTATCCG
ATGGGCGCGAGCTATCAACTGCCCTTGGGACACGTATACGTGCTGCAAGG
CTGCCGAAGGAGGGCATCTGAATATTCTTAGATGGGCTCGAATGAATGGC
TGTCCTTGGGACTCCAAGACATGCGCTGGAGCTGCCAAAGGAGGTCACCT
CCATATCCTCCAATGGGCATTTGCCAACGGCTGTCCCTGGGACGCCAAGA
CATCTGTGGGGGCTGCCAGCGAAGGTCACCTTGAGGTTCTTCAATGGGCG
AGAGCAAACGGCTGTCCATGGACTAAATTTGTCTGCGCACAAGCTGCCGC
AGGAGGACACATCGACGTCCTTAAGTGGGCAAGGGCAAACGGCTGTCCGT
GGGACGAGACGACGATTGCTTGGGCAAAGCGCGAGGAACGCATGGCGATA
GTCGCTTGGGCACGGAAGAATGGATGTCCGGAATAGATGCCTCGGAATGC
AGATCTCTGCGGGAAAGCCGCCCGCGTGGGAAACGTGGGGGCGCTACGGT
GTGCGCGGAGGCATGGCTGTCCGCTGAGCGCAAGAATCGGCTCGCGTACC
ATTAATGCATGTGACGAGGCAGCATCTGAAGGGCATCTGGGCGCTCTTCA
GTGGGCACGGGTGAACGGTTGCCCCTGGGATGCGCAGACCTCCAGCAAGG
CCGCGGCAGGGGGACACCTCCGCGTCCTAATGTGGGCGCAAATATGTGGC
TGCCCGTGGGACGCGTGGACATGCGCAAAGGCTGCGGAGAACGGCCACAT
GATCGTCCTCAAGTGGTCGCGATCGAATGGTTGTCCTTGGGACGGTACCA
CTTGCAGCGGTGCTGCTGCCGGAGGACACCTGCGTCTGCTGCAGTGGGCC
CACGCGAATGGTTGCCCCTGGGATGGAAGAACATGCGCCGAGGCTGCCTT
GGCTGGTCACCTTGACATTCTCCAATGGGCTCGGGCTAATGGCTGCCCTT
GGAGCTTGACGACTTCGTACAGGGCTGCTGAACGTGGTCAGTTGGACACT
TTGAAGTGGGCGCGTGCTAATGGCTGCCCCTATGACTCAAGCATGTGCTA
CAATGCTGCTTTCAAAGGGCACTTGAAAGTTATCCGATGGGCGCGAGCTA
TCAACTGCCCTTGGGACACGTATACGTGCTGCAAGGCTGCCGAAGGAGGG
CATCTGAATATTCTTAGATGGGCTCGAATGAATGGCTGTCCTTGGGACTC
CAAGACATGCGCTGGAGCTGCCAAAGGAGGTCACCTCCATATCCTCCAAT
GGGCATTTGCCAACGGCTGTCCCTGGGACGCCAAGACATCTGTGGGGGCT
GCCAGCGAAGGTCACCTTGAGGTTCTTCAATGGGCGAGAGCAAACGGCTG
TCCATGGACTAAATTTGTCTGCGCACAAGCTGCCGCAGGAGGACACATCG
ACGTCCTTAAGTGGGCAAGGGCAAACGGCTGTCCGTGGGACGAGACGACG
ATTGCTTGGGCAAAGCGCGAGGAACGCATGGCGATAGTCGCTTGGGCACG
GAAGAATGGATGTCCGGAATAG
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