mRNA_H-elongata_contig46377.11730.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig46377.11730.1 vs. uniprot
Match: D8LQ69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ69_ECTSI) HSP 1 Score: 266 bits (680), Expect = 3.120e-80 Identity = 181/438 (41.32%), Postives = 210/438 (47.95%), Query Frame = 1
Query: 1 MRQLDNVPQMAALPIKDSKRALIAWDAGDFQPLVARRASNAIPPPRYLHRVALAGDGWFYLFGGHLEQGMSGSVWRFRVEDS-----PTCRRHLSA---HWELVDCEVGGDDDGGXENDDGIDTD--------------------QSASNEPDEGGLSLESEPPGDHESMSVLP---------QAIAQGAQQGLVE------------------VHWAQNTIPAGVQVGLGENGRAAGAGAEHESAAGVDGGXPXXXPCPRCAASWTCSPGSRDIYLFGGQGSGENFLDDLWCFHSGGRGECWWESLTATQADETPVD---------------RDVGDQDDAPEALEGRWGHTMVEHRGFMYMFGGSFPGQACAGLWRLDTSVRPCLWSFLRPE----------------GTKPPARGGHSATVVRGTLYIFGGNTTE 1056
+RQ+DNVP+MA+LP ++ KRAL+AW+ GDF P++A A PPPRYLHR A A DGW Y+ GGHL+ G+SG VWRFR+ DS P R +A WE V G D+D E A PD + P D+ + LP Q IA GA + H A GV LG AG G + X P PRCAASWT PGS I+LFGGQGS NFL DLWCFH+G RGEC WE L + D DVG GRWGHTMVEHRG +YMFGGS PG A AGLWRLD SV PC+WS + P G +PPARGGHSATVVR TLYIFGGN T+
Sbjct: 51 LRQVDNVPRMASLPSEEGKRALMAWEEGDFLPILALVPRRA-PPPRYLHRAAEAADGWTYVHGGHLQSGLSGDVWRFRMSDSKRRRGPDPREDETAVKLQWEQV--WGGNDEDWARETGSXXXXXXXXXXXXXXXXXXXXSWGHPSHAVPPPDAAXXVAPAAPAPDNVNHGPLPAAQMFAAPGQEIALGAAPAAADQAXXXXXXXXXXXXXXXXXHAAMFAANHGV---LGAGFEDAGGGVDAAGXXXXXXXXXMACPRPRCAASWTALPGSNKIFLFGGQGSDNNFLGDLWCFHAGARGECRWEQLDQVREPRPSGDGXXXXXXXXXXEHGDNDVGGPGAPWRVPAGRWGHTMVEHRGALYMFGGSSPGTAFAGLWRLDVSVSPCVWSLMTPGRTAVSLEEGGLAEAAGGERPPARGGHSATVVRDTLYIFGGNITQ 482
BLAST of mRNA_H-elongata_contig46377.11730.1 vs. uniprot
Match: A0A7R8X6E6_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X6E6_9CRUS) HSP 1 Score: 72.0 bits (175), Expect = 2.330e-10 Identity = 50/137 (36.50%), Postives = 67/137 (48.91%), Query Frame = 1
Query: 658 IYLFGGQGSGENFLD----DLWCFHSGGRGECWWESLTATQADETPVDRDVGDQDDAPEALEGRWGHTMVEHRGFMYMFGGSFPGQACAGLWRLDTSVRPCLWSFLRPEGTKPPARGGHSATVVRGTLYIFGGNTTE 1056
IY FGG +GENF D D+ F++ W S + ++ D E R+GHT+VEH G +Y++GG QAC L+ DT R WS R G P AR GHSA ++ ++IFGG E
Sbjct: 25 IYSFGGYCTGENFKDFTPIDVHVFNTL---TMKWRSFPVIRREDPRAD----------EVPFRRYGHTVVEHFGKVYLWGGRNDEQACNILYCFDT--RTHCWSCPRVHGQIPGARDGHSAAILGNRMFIFGGFEEE 146
BLAST of mRNA_H-elongata_contig46377.11730.1 vs. uniprot
Match: A0A835Z6C5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C5_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 5.550e-10 Identity = 37/103 (35.92%), Postives = 48/103 (46.60%), Query Frame = 1
Query: 835 RWGHTMVEHRGFMYMFGGSFPGQACAGLWRL------DTSVRPCLWSFLRPE-----------------------GTKPPARGGHSATVVRGTLYIFGGNTTE 1056
RWGHT V G +Y++GGS PG+ A LW + DT W+ L G PP RGGHSAT++ G +Y+FGGNT +
Sbjct: 368 RWGHTAVALDGTLYVYGGSMPGECFAELWAMTPGTDADTGAAAVRWTLLAXXXXXXXXXXXXXXXXXXXXXXXVPGDAPPRRGGHSATLLGGHMYVFGGNTVQ 470
BLAST of mRNA_H-elongata_contig46377.11730.1 vs. uniprot
Match: A0A7R8XGY3_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XGY3_9CRUS) HSP 1 Score: 70.1 bits (170), Expect = 1.840e-9 Identity = 53/140 (37.86%), Postives = 70/140 (50.00%), Query Frame = 1
Query: 652 RDIYLFGGQGSGENFLD----DLWCFHSGGRGECWWESLTATQADETPVDRDVGDQDDAPEALE-GRWGHTMVEHRGFMYMFGGSFPGQACAGLWRLDTSVRPCLWSFLRPEGTKPPARGGHSATVVRGTLYIFGGNTTE 1056
+ IY FGG +GENF D D+ F + W SL PV VG +D + + R+GHT+VEH G +Y++GG +AC L+ DT WS G P AR GHSA ++R +YIFGG E
Sbjct: 23 QSIYCFGGYCNGENFKDFTPIDVHIFDTL---TLRWRSL--------PV---VGKKDPSAGRVPFRRYGHTVVEHLGKVYLWGGRNDERACNVLYCFDTKRHS--WSSPAVLGQIPGARDGHSAAILRDGMYIFGGFEEE 146
BLAST of mRNA_H-elongata_contig46377.11730.1 vs. uniprot
Match: UPI002025E88F (ras guanine nucleotide exchange factor F-like isoform X1 n=2 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI002025E88F) HSP 1 Score: 68.9 bits (167), Expect = 3.320e-9 Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = 1
Query: 658 IYLFGGQGSGENFLDDLWCFHSGGRGECWWESLTATQADETPVDRDVGDQDDAPEALEGRWGHTMVEHRGFMYMFGGSFPG---QACAGLWRLDTSVRP---CLWSFLRPEGTKPPARGGHSATVVRGTLYIFGG 1044
+Y++GG+ + L+D W + G WE L +++ + PE LE HTMVEH+G +Y+FGG Q W DT C + ++ EGT P R GHSA V RG++Y++GG
Sbjct: 35 LYVYGGRHT--TILNDFWRYRIGSNK---WERLDSSE--------------NGPEELEE---HTMVEHQGILYIFGGMVDSAFTQKKNPFWLYDTDPAKWLQCQLTAVQGEGTTPTNRKGHSAVVYRGSMYMYGG 147
BLAST of mRNA_H-elongata_contig46377.11730.1 vs. uniprot
Match: UPI0002659751 (kelch domain-containing protein 3 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002659751) HSP 1 Score: 65.5 bits (158), Expect = 4.020e-8 Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 835 RWGHTMVEHRGFMYMFGGSFPGQACAGLWRLDTSVRPCLWSFLRPEGTKPPARGGHSATVVRGTLYIFGG 1044
R+GHT+VEH G++Y+FGG + C+ L++ D LW +R GT P + GH+ V+ Y+FGG
Sbjct: 97 RFGHTVVEHNGYVYLFGGRSSLEFCSDLFQYDPVAH--LWKKIRTHGTPPESLVGHTMNVIGDVAYVFGG 164
BLAST of mRNA_H-elongata_contig46377.11730.1 vs. uniprot
Match: A0A087YFU6_POEFO (Leucine-zipper-like transcriptional regulator 1 n=9 Tax=Poeciliinae TaxID=586240 RepID=A0A087YFU6_POEFO) HSP 1 Score: 64.7 bits (156), Expect = 7.330e-8 Identity = 47/157 (29.94%), Postives = 67/157 (42.68%), Query Frame = 1
Query: 595 PXXXPCPRCAASWTCSPGSRDIYLFGGQGSGENFLDDLWCFHSGGRGECWWESLTATQADETPVDRDVGDQDDAPEALEGRWGHTMVEHRGFMYMFGG----SFPGQACAGLWRLDTSVR---PCLWSFLRPEGTKPPARGGHSATVVRGTLYIFGG 1044
P PCP C D+Y+ GG+ D C G+ W S+ + + APE LE H+MV H+GF+Y+FGG ++ G+ C LW D PC P+ +P R GHSA V+ T+ ++GG
Sbjct: 12 PQSSPCPCDRYKHACCSYDGDVYVLGGR--------DNSCL-----GDFWKYSVVLDEWTRLSCSGEA-----APEELEQ---HSMVAHKGFLYVFGGMWDSAYTGRRCP-LWVFDVVNEKWVPCQGKTSSPQSQRPSNRKGHSAVVLGSTMLVYGG 146
BLAST of mRNA_H-elongata_contig46377.11730.1 vs. uniprot
Match: UPI001FAC736B (leucine-zipper-like transcriptional regulator 1 homolog n=1 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAC736B) HSP 1 Score: 63.5 bits (153), Expect = 1.740e-7 Identity = 48/152 (31.58%), Postives = 69/152 (45.39%), Query Frame = 1
Query: 610 CPRCAASWTCSPGSRDIYLFGGQGSGENFLDDLWCFHSGGRGECWWESLTATQADETPVDRDVGDQDDAPEALEGRWGHTMVEHRGFMYMFGG----SFPGQACAGLWRLDTSVR---PCLWSFLRPEGTKPPARGGHSATVVRGTLYIFGG 1044
CP C + ++Y+ GG+ S + L D W + S E W L T D APE LE H+MV H+GF+Y+FGG ++ G C LW D + + PC P+ +P R GHSA V+ + ++GG
Sbjct: 21 CPCARYKHACCSSNGNVYVLGGRDS--SCLGDFWKY-SVVLDE--WTKLNCTG-------------DAAPEELEQ---HSMVTHKGFLYVFGGMWDSAYTGGRCP-LWVFDIANQKWVPCQGKTSSPQTQRPSNRKGHSAVVLGSAMLVYGG 150
BLAST of mRNA_H-elongata_contig46377.11730.1 vs. uniprot
Match: UPI00165B9BAC (leucine-zipper-like transcriptional regulator 1 homolog n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165B9BAC) HSP 1 Score: 63.2 bits (152), Expect = 2.300e-7 Identity = 52/153 (33.99%), Postives = 70/153 (45.75%), Query Frame = 1
Query: 607 PCPRCAASWTCSPGSRDIYLFGGQGSGENFLDDLWCFHSGGRGECWWESLTATQADETPVDRDVGDQDDAPEALEGRWGHTMVEHRGFMYMFGGS----FPGQACAGLWRLDTSVR---PCLWSFLRPEGTKPPARGGHSATVVRGTLYIFGG 1044
PC R + C +Y+ GG+ SG L D W + S E W L+ T + APE LE HTMV H+GF+Y+FGG F G+ C LW DT + PC P+ +P R GHSA V+ + ++GG
Sbjct: 22 PCDRYKHA--CCSYDGTVYVLGGRDSG--CLGDFWKY-SVVLDE--WTRLSCTG-------------EAAPEELEQ---HTMVAHKGFLYVFGGMWDSPFTGRRCP-LWVFDTVNQKWVPCQGKTSSPQTQRPSNRKGHSAVVLGSAMLVYGG 150
BLAST of mRNA_H-elongata_contig46377.11730.1 vs. uniprot
Match: UPI001893AC3C (kelch domain-containing protein 3-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001893AC3C) HSP 1 Score: 62.4 bits (150), Expect = 3.570e-7 Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 835 RWGHTMVEHRGFMYMFGGSFPGQACAGLWRLDTSVRPCLWSFLRPEGTKPPARGGHSATVVRGTLYIFGG 1044
R+GHT+V H + Y++GG AC+ ++R DTS W R G P AR GHSA VV +Y+FGG
Sbjct: 70 RFGHTVVGHGEYAYLWGGRNEDGACSIVYRFDTSS--LTWLRPRTTGETPAAREGHSACVVGSRMYVFGG 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46377.11730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig46377.11730.1 >prot_H-elongata_contig46377.11730.1 ID=prot_H-elongata_contig46377.11730.1|Name=mRNA_H-elongata_contig46377.11730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=352bp MRQLDNVPQMAALPIKDSKRALIAWDAGDFQPLVARRASNAIPPPRYLHRback to top mRNA from alignment at H-elongata_contig46377:2190..3990+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig46377.11730.1 ID=mRNA_H-elongata_contig46377.11730.1|Name=mRNA_H-elongata_contig46377.11730.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1801bp|location=Sequence derived from alignment at H-elongata_contig46377:2190..3990+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig46377:2190..3990+ >mRNA_H-elongata_contig46377.11730.1 ID=mRNA_H-elongata_contig46377.11730.1|Name=mRNA_H-elongata_contig46377.11730.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2112bp|location=Sequence derived from alignment at H-elongata_contig46377:2190..3990+ (Himanthalia elongata Himel1 dioecious)back to top |