prot_H-elongata_contig45944.11668.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig45944.11668.1
Unique Nameprot_H-elongata_contig45944.11668.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length145
Homology
BLAST of mRNA_H-elongata_contig45944.11668.1 vs. uniprot
Match: D7G8V6_ECTSI (Rad51 homolog C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V6_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 1.450e-84
Identity = 128/145 (88.28%), Postives = 136/145 (93.79%), Query Frame = 0
Query:    1 TQTGLSARDLIVRGRHKKPIITFCREIDQMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVEGEALYIDTEGSLTVERLCQLCAAVVEHLQKIAKSKRKQGVMNLDSVVPTQEALLGGIHVWRLHDHAEQLAAVR 145
            +Q G SAR+LIVRGRHKKPIITFCREID M+GGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGV G ALYIDTEGSLTVERL QLC+AVVEHLQKIA++KRKQGV +L+S VPTQEA LGGIHVWRLHDHAEQLAAVR
Sbjct:   20 SQAGASARELIVRGRHKKPIITFCREIDGMMGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIARNKRKQGVPDLESAVPTQEAFLGGIHVWRLHDHAEQLAAVR 164          
BLAST of mRNA_H-elongata_contig45944.11668.1 vs. uniprot
Match: A0A835ZD48_9STRA (Rad51-like protein c n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD48_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.090e-45
Identity = 85/146 (58.22%), Postives = 106/146 (72.60%), Query Frame = 0
Query:    6 SARDLIVRGRHKKPIITFCREIDQMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVEGEALYIDTEGSLTVERLCQLCAAVVEHLQKIAKSKRKQGV------MNLDSVVPTQEALLGGIHVWRLHDHAEQLAAVR 145
            SA DL+ + R  + I+ F R+ID M GGGVPRGELTE+ GTPG+GKTQFGMQLAVDVQIP  FGGV GEA+YIDTEGS T ER+ Q+  A+V HL +++ + RK+            + + T+E LL  IHV+R+HDHAEQLAAVR
Sbjct:   91 SASDLLAQERATRGIVCFSRKIDDMFGGGVPRGELTEIMGTPGIGKTQFGMQLAVDVQIPVLFGGVGGEAVYIDTEGSFTPERVAQMADALVSHLARVSAAHRKKQTPAQAEQWAAAAALVTREYLLRRIHVFRVHDHAEQLAAVR 236          
BLAST of mRNA_H-elongata_contig45944.11668.1 vs. uniprot
Match: A0A2P6U2Y1_CHLSO (DNA repair RAD51-like protein 3 isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U2Y1_CHLSO)

HSP 1 Score: 147 bits (371), Expect = 3.060e-38
Identity = 78/140 (55.71%), Postives = 94/140 (67.14%), Query Frame = 0
Query:    5 LSARDLIVRGRHKKPIITFCREIDQMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVEGEALYIDTEGSLTVERLCQLCAAVVEHLQKIAKSKRKQGVMNLDSVVPTQEALLGGIHVWRLHDHAEQLAAV 144
            LSAR +  R    K IITF  E+D +LGGGV  G +TE CG PGVGKTQ GMQLA+DVQ+P  FGG+ G A+YIDTEGS  +ER CQ+  A V HLQ+ A  K+    +   + + TQEALL GIH +R  DH EQLA V
Sbjct: 1100 LSARQIFEREAAAKRIITFAAELDGILGGGVETGAITEFCGVPGVGKTQLGMQLALDVQLPAAFGGIGGTAVYIDTEGSFMLERCCQMADAFVAHLQRAAAKKQDPARIAAAAAL-TQEALLAGIHYFRARDHIEQLAVV 1238          
BLAST of mRNA_H-elongata_contig45944.11668.1 vs. uniprot
Match: A0A2P6VM80_9CHLO (Sodium hydrogen exchanger 7 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VM80_9CHLO)

HSP 1 Score: 146 bits (368), Expect = 7.870e-38
Identity = 77/140 (55.00%), Postives = 94/140 (67.14%), Query Frame = 0
Query:    5 LSARDLIVRGRHKKPIITFCREIDQMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVEGEALYIDTEGSLTVERLCQLCAAVVEHLQKIAKSKRKQGVMNLDSVVPTQEALLGGIHVWRLHDHAEQLAAV 144
            LSAR +  R     PIITF  E+D M+GGGV  G +TE CG PGVGKTQ GMQLA+DVQIP  FGG+ GEA+YIDTEGS  +ER CQ+  A+  HL + A +K         + V  ++ALL GIH +R+ DH EQLAAV
Sbjct: 1702 LSARQIFEREATASPIITFVPELDTMMGGGVETGAITEFCGVPGVGKTQLGMQLALDVQIPAAFGGLAGEAVYIDTEGSFMLERCCQMADALSRHLARAAAAKGDAAKAAAAAAVG-RDALLAGIHYFRIRDHVEQLAAV 1840          
BLAST of mRNA_H-elongata_contig45944.11668.1 vs. uniprot
Match: A0A7S3UDT2_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UDT2_9CHLO)

HSP 1 Score: 139 bits (350), Expect = 2.780e-37
Identity = 70/143 (48.95%), Postives = 98/143 (68.53%), Query Frame = 0
Query:    2 QTGLSARDLIVRGRHKKPIITFCREIDQMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVEGEALYIDTEGSLTVERLCQLCAAVVEHLQKIAKSKRKQGVMNLDSVVPTQEALLGGIHVWRLHDHAEQLAAV 144
            ++G +A  +  + R ++ ++TFC  +D++LGGGV   E+TE CG PG+GKTQ GMQLAVDVQIP +FGG+ G+A+YIDTEGS   ER  ++  A +EHLQKIA S +   ++ L S     E +L  IH +R+HD  EQ+A V
Sbjct:   79 RSGKTADVIFEQERRRRRVVTFCPALDELLGGGVAPCEITEFCGVPGIGKTQLGMQLAVDVQIPQEFGGLAGQAVYIDTEGSFMAERAEEIADACLEHLQKIATSAQDADLLRLVSKWDV-EKMLANIHFFRVHDSTEQIALV 220          
BLAST of mRNA_H-elongata_contig45944.11668.1 vs. uniprot
Match: A0A0L0DVQ9_THETB (Rad51 DNA recombinase 3 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DVQ9_THETB)

HSP 1 Score: 138 bits (348), Expect = 1.530e-36
Identity = 72/143 (50.35%), Postives = 94/143 (65.73%), Query Frame = 0
Query:    2 QTGLSARDLIVRGRHKKPIITFCREIDQMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVEGEALYIDTEGSLTVERLCQLCAAVVEHLQKIAKSKRKQGVMNLDSVVPTQEALLGGIHVWRLHDHAEQLAAV 144
            + G SA  L++  R + PIITFC E+D+MLGGGVP G++TE  G PG+GKTQ GMQLAVDVQIP  FGG  G A+YIDTEGS  VER  ++ +AVV HL   A +      ++L+SV       L  I  +R+H + EQ+A +
Sbjct:   87 EVGRSAYALLLEERQQVPIITFCAEVDEMLGGGVPLGKVTEFTGAPGIGKTQLGMQLAVDVQIPEAFGGAGGSAIYIDTEGSFVVERAVEIASAVVSHLDAQAAADGVAHGLSLESV-------LSSIAYYRVHSYVEQIALI 222          
BLAST of mRNA_H-elongata_contig45944.11668.1 vs. uniprot
Match: A0A835T5F4_CHLIN (RECA_2 domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T5F4_CHLIN)

HSP 1 Score: 136 bits (342), Expect = 4.510e-36
Identity = 68/146 (46.58%), Postives = 92/146 (63.01%), Query Frame = 0
Query:    5 LSARDLIVRGRHKKPIITFCREIDQMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVEGEALYIDTEGSLTVERLCQLCAAVVEHLQKIAKSKRKQGVMNLDSVVP------TQEALLGGIHVWRLHDHAEQLAAV 144
            +SA DL+       PI+T CRE+D++LGGGV  G++TE CG PGVGKTQ GMQLA++ Q+P   GG EG+A+YIDTEGS   ER        V ++Q +A  +   G   L  + P      T E+L+ GI+++R+HDH EQL  V
Sbjct:   77 VSAADLLASAAATPPIVTMCRELDELLGGGVSSGQVTEFCGMPGVGKTQLGMQLAINAQLPRDLGGPEGQAVYIDTEGSFMAERCADFADGAVRYVQSMADQQAALGRPELLQLQPGGERPVTLESLMRGIYLFRVHDHTEQLGLV 222          
BLAST of mRNA_H-elongata_contig45944.11668.1 vs. uniprot
Match: UPI001425896F (DNA repair protein RAD51 homolog 3-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425896F)

HSP 1 Score: 136 bits (343), Expect = 4.560e-36
Identity = 71/136 (52.21%), Postives = 94/136 (69.12%), Query Frame = 0
Query:   11 IVRGRHKKP-IITFCREIDQMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVEGEALYIDTEGSLTVERLCQLCAAVVEHLQKIAKSKRKQGVMNLDSVVP-TQEALLGGIHVWRLHDHAEQLAAV 144
            I++   K P +ITFC E+D MLGGG+P G+ TE+CG PGVGKTQ  +QLAVDVQIP +FGG+EGEA+YIDTEGS  VER  ++  AVVEH   +A S+     + L S+   T++ +L GIH  R  D+ E +A +
Sbjct:   76 ILQEESKLPSVITFCEEMDNMLGGGIPLGKTTEICGAPGVGKTQICIQLAVDVQIPEEFGGLEGEAMYIDTEGSFMVERASEIAKAVVEHCGNVAASQNNN--VQLKSMEKFTEDGILAGIHYTRCQDYIELIAFI 209          
BLAST of mRNA_H-elongata_contig45944.11668.1 vs. uniprot
Match: A0A1D2A395_AUXPR (RECA_2 domain-containing protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A395_AUXPR)

HSP 1 Score: 135 bits (341), Expect = 6.210e-36
Identity = 73/144 (50.69%), Postives = 97/144 (67.36%), Query Frame = 0
Query:    5 LSARDLIVRGRHKKPIITFCREIDQMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVEGEALYIDTEGSLTVERLCQLCAAVVEHLQKIAKSK----RKQGVMNLDSVVPTQEALLGGIHVWRLHDHAEQLAAV 144
            LSA+ L  R R  + IITFC  +D +LGGGV   ++TEVCG PG+GKTQ GMQLA+DVQIP  FGG+ GEALY+D EG LT+ERL Q+  A+  HL+++A ++    R Q    L     T+E +   +H++R+HD AE LA V
Sbjct:   67 LSAKALYDRERRSQRIITFCAGLDSILGGGVGLQQITEVCGGPGLGKTQLGMQLALDVQIPDCFGGLGGEALYVDAEGGLTLERLTQMADALAAHLRRVAAARGDARRAQAAAAL-----TRERMFDAVHLYRVHDLAELLAVV 205          
BLAST of mRNA_H-elongata_contig45944.11668.1 vs. uniprot
Match: A0A2C9LA23_BIOGL (RECA_2 domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9LA23_BIOGL)

HSP 1 Score: 134 bits (338), Expect = 1.530e-35
Identity = 71/142 (50.00%), Postives = 91/142 (64.08%), Query Frame = 0
Query:    3 TGLSARDLIVRGRHKKPIITFCREIDQMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVEGEALYIDTEGSLTVERLCQLCAAVVEHLQKIAKSKRKQGVMNLDSVVPTQEALLGGIHVWRLHDHAEQLAAV 144
            T  +A DL++  +    I+TFC  +D MLG G+P G++TE+CG PGVGKTQ  +QLAVDVQIP   GG++GEA+YIDTEGS  VERL  +  A V+H Q I      QG   L S+  + E +L GIH +   DH E LA V
Sbjct:   70 TEKTALDLLLEEQETSGIVTFCESLDTMLGDGIPLGKITEICGAPGVGKTQLCLQLAVDVQIPVDIGGLDGEAVYIDTEGSFIVERLVDIATATVDHCQLI----HMQGGGELGSIDISVEHILAGIHYFHCLDHTEFLACV 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig45944.11668.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8V6_ECTSI1.450e-8488.28Rad51 homolog C n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A835ZD48_9STRA2.090e-4558.22Rad51-like protein c n=1 Tax=Tribonema minus TaxID... [more]
A0A2P6U2Y1_CHLSO3.060e-3855.71DNA repair RAD51-like protein 3 isoform X1 n=1 Tax... [more]
A0A2P6VM80_9CHLO7.870e-3855.00Sodium hydrogen exchanger 7 n=1 Tax=Micractinium c... [more]
A0A7S3UDT2_9CHLO2.780e-3748.95Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A0L0DVQ9_THETB1.530e-3650.35Rad51 DNA recombinase 3 n=1 Tax=Thecamonas trahens... [more]
A0A835T5F4_CHLIN4.510e-3646.58RECA_2 domain-containing protein n=1 Tax=Chlamydom... [more]
UPI001425896F4.560e-3652.21DNA repair protein RAD51 homolog 3-like n=1 Tax=An... [more]
A0A1D2A395_AUXPR6.210e-3650.69RECA_2 domain-containing protein n=3 Tax=Auxenochl... [more]
A0A2C9LA23_BIOGL1.530e-3550.00RECA_2 domain-containing protein n=1 Tax=Biomphala... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 5..145
e-value: 2.8E-32
score: 114.2
NoneNo IPR availablePANTHERPTHR46239FAMILY NOT NAMEDcoord: 6..144
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 16..95
e-value: 9.5E-24
score: 84.0
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 16..145
score: 26.605
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 19..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig45944contigH-elongata_contig45944:140..1318 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig45944.11668.1mRNA_H-elongata_contig45944.11668.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig45944 140..1318 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig45944.11668.1 ID=prot_H-elongata_contig45944.11668.1|Name=mRNA_H-elongata_contig45944.11668.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
TQTGLSARDLIVRGRHKKPIITFCREIDQMLGGGVPRGELTEVCGTPGVG
KTQFGMQLAVDVQIPHQFGGVEGEALYIDTEGSLTVERLCQLCAAVVEHL
QKIAKSKRKQGVMNLDSVVPTQEALLGGIHVWRLHDHAEQLAAVR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase