prot_H-elongata_contig4562.11638.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4562.11638.1
Unique Nameprot_H-elongata_contig4562.11638.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length119
Homology
BLAST of mRNA_H-elongata_contig4562.11638.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 7.990e-35
Identity = 67/119 (56.30%), Postives = 85/119 (71.43%), Query Frame = 0
Query:    1 PTGHKVIGSKCVYKAKVDNSRKARVVVLRWWKMPGIDCGSTFAPVCRLQSIRIVLSIAAEYDLECWQLDYNIMFLNADVMEEVYVKIAPGYEEFDDNGVPMVMKILKSFYGLCQSPNEW 119
            P GH VIGSK V+K K +N+ KAR+V   W ++PG DCG TFAPVCRLQSIR+V +IAAE DL+  QLD    FL AD+ E V+V++APGYE  +   + +VMK+ KS  GL QSP +W
Sbjct:  343 PLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDW 461          
BLAST of mRNA_H-elongata_contig4562.11638.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.380e-32
Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 0
Query:    1 PTGHKVIGSKCVYKAKVDNSRKARVVVLRWWKMPGIDCGSTFAPVCRLQSIRIVLSIAAEYDLECWQLDYNIMFLNADVMEEVYVKIAPGYEEFDDNGVPMVMKILKSFYGLCQSPNEW 119
            P G K I S+ V+K KVD S K R+V   W ++PG+DCGST+APVCRLQSIR++  IA +++LE  Q+D +  FL AD++E V+V+  PG+E  D +G  +VM++ KS YGL QSP+ W
Sbjct:  877 PPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNW 995          
BLAST of mRNA_H-elongata_contig4562.11638.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 8.840e-32
Identity = 62/119 (52.10%), Postives = 81/119 (68.07%), Query Frame = 0
Query:    1 PTGHKVIGSKCVYKAKVDNSRKARVVVLRWWKMPGIDCGSTFAPVCRLQSIRIVLSIAAEYDLECWQLDYNIMFLNADVMEEVYVKIAPGYEEFDDNGVPMVMKILKSFYGLCQSPNEW 119
            P G K I SK V+K K D + K RVV   W ++PG+DCGST+APVCR+QS+R+V  I  E++L   Q+D +  FL AD+ EEV+V+  PG+E  D +G  MVMK+ KS YGL QSP  W
Sbjct:  171 PPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNW 289          
BLAST of mRNA_H-elongata_contig4562.11638.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.350e-30
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 0
Query:    1 PTGHKVIGSKCVYKAKVDNSRKARVVVLRWWKMPGIDCGSTFAPVCRLQSIRIVLSIAAEYDLECWQLDYNIMFLNADVMEEVYVKIAPGYEEFDDNGVPMVMKILKSFYGLCQSPNEW 119
            P   K I SK V+K K D + K RVV   W ++PG+DCGST+APVCR+QS+R+V  I  E++L   Q+D +  FL AD+ EEV+V+  PG+E  D +G  MVMK+ KS YGL QSP  W
Sbjct: 1192 PPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNW 1310          
BLAST of mRNA_H-elongata_contig4562.11638.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.350e-30
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 0
Query:    1 PTGHKVIGSKCVYKAKVDNSRKARVVVLRWWKMPGIDCGSTFAPVCRLQSIRIVLSIAAEYDLECWQLDYNIMFLNADVMEEVYVKIAPGYEEFDDNGVPMVMKILKSFYGLCQSPNEW 119
            P   K I SK V+K K D + K RVV   W ++PG+DCGST+APVCR+QS+R+V  I  E++L   Q+D +  FL AD+ EEV+V+  PG+E  D +G  MVMK+ KS YGL QSP  W
Sbjct: 1357 PPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNW 1475          
BLAST of mRNA_H-elongata_contig4562.11638.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.820e-30
Identity = 60/119 (50.42%), Postives = 83/119 (69.75%), Query Frame = 0
Query:    1 PTGHKVIGSKCVYKAKVDNSRKARVVVLRWWKMPGIDCGSTFAPVCRLQSIRIVLSIAAEYDLECWQLDYNIMFLNADVMEEVYVKIAPGYEEFDDNGVPMVMKILKSFYGLCQSPNEW 119
            P G K I SK V+K K D S K R+VV  W ++PG+D GSTFAPVCRLQSIR++   A +++LE  Q+D +  FL AD++E V+V+  PG+E  + +G  +VM++ KS YGL QSP+ W
Sbjct:   91 PPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLYGLAQSPSNW 209          
BLAST of mRNA_H-elongata_contig4562.11638.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.490e-30
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 0
Query:    1 PTGHKVIGSKCVYKAKVDNSRKARVVVLRWWKMPGIDCGSTFAPVCRLQSIRIVLSIAAEYDLECWQLDYNIMFLNADVMEEVYVKIAPGYEEFDDNGVPMVMKILKSFYGLCQSPNEW 119
            P G K I SK V+K K   S K R+V   W ++PG+DCG+T+APVCR QSIR++  IA +++LE  Q+D +  FL AD++E V+V+  PG+E  D +G  +VM++ KS YGL QSP+ W
Sbjct:  500 PPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNW 618          
BLAST of mRNA_H-elongata_contig4562.11638.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.180e-29
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 0
Query:    1 PTGHKVIGSKCVYKAKVDNSRKARVVVLRWWKMPGIDCGSTFAPVCRLQSIRIVLSIAAEYDLECWQLDYNIMFLNADVMEEVYVKIAPGYEEFDDNGVPMVMKILKSFYGLCQSPNEW 119
            P G K I SK V+K K D S K R+V   W ++PG+DCGST+APVCRLQSIR++  I  +++LE  Q+D +  F  AD++E V+V+  PG+E  D +G  +VM++ KS YGL Q  + W
Sbjct:   91 PPGRKRIKSKWVFKRKADGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVFVERPPGFEVKDKDGGDLVMQLQKSLYGLAQIASNW 209          
BLAST of mRNA_H-elongata_contig4562.11638.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.170e-29
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 0
Query:    1 PTGHKVIGSKCVYKAKVDNSRKARVVVLRWWKMPGIDCGSTFAPVCRLQSIRIVLSIAAEYDLECWQLDYNIMFLNADVMEEVYVKIAPGYEEFDDNGVPMVMKILKSFYGLCQSPNEW 119
            P   K I SK V+K K D + K RVV   W ++PG+DCGST+APVCR+QS+R+V  I  E++L   Q+D +  FL  D+ EEV+V+  PG+E  D +G  MVMK+ +S YGL QSP  W
Sbjct:  973 PPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYTDIHEEVFVEQPPGFEVKDKDGGDMVMKLNRSLYGLAQSPGNW 1091          
BLAST of mRNA_H-elongata_contig4562.11638.1 vs. uniprot
Match: A0A6H5KER0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER0_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 9.930e-29
Identity = 57/117 (48.72%), Postives = 82/117 (70.09%), Query Frame = 0
Query:    3 GHKVIGSKCVYKAKVDNSRKARVVVLRWWKMPGIDCGSTFAPVCRLQSIRIVLSIAAEYDLECWQLDYNIMFLNADVMEEVYVKIAPGYEEFDDNGVPMVMKILKSFYGLCQSPNEW 119
            G K   SK V+K K D S K R+V   W ++PG+DCGST+APVCRLQSIR++  IA +++LE  Q+D +  FL AD++E+++V+   G+E  D++G  +VM++ KS YGL QSP  W
Sbjct:  522 GRKRTKSKWVFKRKEDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILEKLFVEQPLGFEVRDNDGGDLVMQLQKSLYGLAQSPRNW 638          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4562.11638.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE7.990e-3556.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN1_9PHAE4.380e-3251.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE8.840e-3252.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.350e-3051.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.350e-3051.26Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KWT4_9PHAE2.820e-3050.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE4.490e-3048.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPN4_9PHAE1.180e-2947.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JYB5_9PHAE2.170e-2949.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KER0_9PHAE9.930e-2948.72CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..119
e-value: 1.0E-25
score: 90.8
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..119
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4562contigH-elongata_contig4562:6783..7139 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4562.11638.1mRNA_H-elongata_contig4562.11638.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4562 6783..7139 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4562.11638.1 ID=prot_H-elongata_contig4562.11638.1|Name=mRNA_H-elongata_contig4562.11638.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
PTGHKVIGSKCVYKAKVDNSRKARVVVLRWWKMPGIDCGSTFAPVCRLQS
IRIVLSIAAEYDLECWQLDYNIMFLNADVMEEVYVKIAPGYEEFDDNGVP
MVMKILKSFYGLCQSPNEW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like