mRNA_H-elongata_contig114533.1157.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114533.1157.1
Unique NamemRNA_H-elongata_contig114533.1157.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114533.1157.1 vs. uniprot
Match: A0A6H5JMK4_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMK4_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.700e-7
Identity = 26/63 (41.27%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    4 YIRGDFAEDIEDHAISEYARYFKQAVINSKIQVFEKAATIVKGAVGQAVMKIAPNAVKAKENL 192
            ++R ++   I+DH+ SEY R FKQ V+NS++ + +KA ++V  A+G  V+K+AP+A + K+ L
Sbjct:  360 WLRFEYIRGIDDHSTSEYIRLFKQIVLNSRVPLMDKAISVVMDALGDLVLKLAPDAAENKKML 422
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114533.1157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMK4_9PHAE1.700e-741.27Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114533contigH-elongata_contig114533:571..1458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size241
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.6452346-CDS-H-elongata_contig114533:570..7261622929661.6452346-CDS-H-elongata_contig114533:570..726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114533 571..726 +
1691679109.9879668-CDS-H-elongata_contig114533:570..7261691679109.9879668-CDS-H-elongata_contig114533:570..726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114533 571..726 +
1622929661.6726756-CDS-H-elongata_contig114533:1374..14581622929661.6726756-CDS-H-elongata_contig114533:1374..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114533 1375..1458 +
1691679109.996192-CDS-H-elongata_contig114533:1374..14581691679109.996192-CDS-H-elongata_contig114533:1374..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114533 1375..1458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114533.1157.1prot_H-elongata_contig114533.1157.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114533 571..1458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114533.1157.1

>prot_H-elongata_contig114533.1157.1 ID=prot_H-elongata_contig114533.1157.1|Name=mRNA_H-elongata_contig114533.1157.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
SYIRGDFAEDIEDHAISEYARYFKQAVINSKIQVFEKAATIVKGAVGQAV
MKIAPNAVKAKENLKKINTRATFIKEARN*
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mRNA from alignment at H-elongata_contig114533:571..1458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114533.1157.1 ID=mRNA_H-elongata_contig114533.1157.1|Name=mRNA_H-elongata_contig114533.1157.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=888bp|location=Sequence derived from alignment at H-elongata_contig114533:571..1458+ (Himanthalia elongata Himel1 dioecious)
TCGTACATTCGAGGAGATTTCGCCGAGGATATCGAGGACCATGCCATATC
CGAGTACGCGAGGTATTTCAAGCAAGCGGTCATCAACTCGAAGATCCAGG
TTTTCGAAAAGGCGGCGACCATCGTTAAAGGCGCTGTGGGCCAGGCCGTC
ATGAAGGTGACCTTCCAGTGATTACCTATATAAGATCAAAATCCGCTTTT
TTGGTCATTATTAGTTTTTAACAGTTACCTCGGCGAAAGCTAACTTAATT
CATTGATTGGTTGATTTATCAGATAATAAGTAAGGTGATATCAAAATCCA
GTCCGCAGTCACAAGATAGAATTTTAAAGTATGGAAACAAAGAAAAACAA
ACAAACTTTACGATCATGTCATGAAGGATTAGTAACTGGAAATCCTTCAA
AACGACGCTCCCGCTACTACGCGAAAGGCGCTTTCCAGAGCGTACACGAT
GATATCATGATGATATTTATTTGCTTCCCCAAACTAATACTAGAACGGAG
CTAGCAAAGCTGTCGCTGAAACATTGTTCACTATATTTCATTTCTTCCAC
CAATCGATGTCGTAAGAGTCATAAGACGGGATCCCCGACATTAACCGTCG
ACTCGACCCGATGACTTTACCACTGGGGAACACGAATAATCATATATATA
TATATTGTCGTTAAATATTATAGTAATATCCACATTCGAATATTCGGAGG
GTTTTAATGAGTTCATACCTGGTATGTTTTAATAAAAAGCGTTCCGATAC
GCCCCTCCTGCTGCTGCATGCACACTTCGCGCTTCCCTCTTCTTCCGGGC
TTAGATTGCGCCGAACGCCGTAAAGGCGAAGGAAAACCTAAAGAAAATCA
ATACGAGAGCAACATTTATCAAGGAGGCCAGGAACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig114533:571..1458+

>mRNA_H-elongata_contig114533.1157.1 ID=mRNA_H-elongata_contig114533.1157.1|Name=mRNA_H-elongata_contig114533.1157.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig114533:571..1458+ (Himanthalia elongata Himel1 dioecious)
TCGTACATTCGAGGAGATTTCGCCGAGGATATCGAGGACCATGCCATATC
CGAGTACGCGAGGTATTTCAAGCAAGCGGTCATCAACTCGAAGATCCAGG
TTTTCGAAAAGGCGGCGACCATCGTTAAAGGCGCTGTGGGCCAGGCCGTC
ATGAAGTCGTACATTCGAGGAGATTTCGCCGAGGATATCGAGGACCATGC
CATATCCGAGTACGCGAGGTATTTCAAGCAAGCGGTCATCAACTCGAAGA
TCCAGGTTTTCGAAAAGGCGGCGACCATCGTTAAAGGCGCTGTGGGCCAG
GCCGTCATGAAGATTGCGCCGAACGCCGTAAAGGCGAAGGAAAACCTAAA
GAAAATCAATACGAGAGCAACATTTATCAAGGAGGCCAGGAACTAGATTG
CGCCGAACGCCGTAAAGGCGAAGGAAAACCTAAAGAAAATCAATACGAGA
GCAACATTTATCAAGGAGGCCAGGAACTAG
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