mRNA_H-elongata_contig114493.1152.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114493.1152.1
Unique NamemRNA_H-elongata_contig114493.1152.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114493.1152.1 vs. uniprot
Match: D7G0I1_ECTSI (Mitogen-activated protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0I1_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.590e-58
Identity = 101/128 (78.91%), Postives = 104/128 (81.25%), Query Frame = 1
Query:    1 DLHHIIYSGQNLKEAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGKV---SSCSPSGS---------------GVAPDVEDSDTGNEVKLTEYVVTRWWRAPEVFLE 330
            DLHHIIYSGQNLK+AHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGK     + SP GS               GVAPDVED D+G EVKLTEYVVTRWWRAPEVFLE
Sbjct:  196 DLHHIIYSGQNLKQAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGKAPASETTSPGGSXXXXXXXXXXXXXXXGVAPDVEDGDSGGEVKLTEYVVTRWWRAPEVFLE 323          
BLAST of mRNA_H-elongata_contig114493.1152.1 vs. uniprot
Match: A0A6H5JCV3_9PHAE (Mitogen-activated protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV3_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.010e-55
Identity = 98/131 (74.81%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 DLHHIIYSGQNLKEAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGKVSSC---SPSGSG------------------VAPDVEDSDTGNEVKLTEYVVTRWWRAPEVFLE 330
            DLHHIIYSGQNLK+AHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTC+LKLCDFGLARSLG+  +    SP GSG                  V+PDVED D+G EVKLTEYVVTRWWRAPEVFLE
Sbjct:  214 DLHHIIYSGQNLKQAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCELKLCDFGLARSLGRAPAAETTSPGGSGRDXXXXXXXXXXXXXXXGVSPDVEDGDSGGEVKLTEYVVTRWWRAPEVFLE 344          
BLAST of mRNA_H-elongata_contig114493.1152.1 vs. uniprot
Match: A0A835ZKF4_9STRA (Mitogen-activated protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKF4_9STRA)

HSP 1 Score: 162 bits (411), Expect = 8.440e-44
Identity = 81/112 (72.32%), Postives = 90/112 (80.36%), Query Frame = 1
Query:    1 DLHHIIYSGQNLKEAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGKVSSCSPSGSGVAPDVEDSDTGNEVKLTEYVVTRWWRAPEVFLEGE 336
            DLHHIIYSGQ+LKEAH+QFF+YQ+LCGL YMHSA+VIHRDLKPANVLVNTTCDLKLCDFGLARSL   S+        A    D + G   K+TEYVVTRWWRAPEVFLE +
Sbjct:  213 DLHHIIYSGQHLKEAHMQFFMYQMLCGLKYMHSAQVIHRDLKPANVLVNTTCDLKLCDFGLARSLLNTSA--------AATQPDDEPGG--KMTEYVVTRWWRAPEVFLEAK 314          
BLAST of mRNA_H-elongata_contig114493.1152.1 vs. uniprot
Match: A0A835ZD69_9STRA (Mitogen-activated protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD69_9STRA)

HSP 1 Score: 159 bits (403), Expect = 6.690e-43
Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    1 DLHHIIYSGQNLKEAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGKVSSCSPSGSGVAPDVEDSDTGNEVKLTEYVVTRWWRAPEVFLEGE 336
            DLHHIIYSGQ+LKEAH+QFF+YQ+LCGL YMHSA+VIHRDLKPANVL+NT CDLKLCDFGLARSL   +         A D    D     ++TEYVVTRWWRAPEVFLE +
Sbjct:  211 DLHHIIYSGQHLKEAHMQFFMYQLLCGLKYMHSAQVIHRDLKPANVLINTNCDLKLCDFGLARSLFNTN---------ADDTLSEDDEPGGRMTEYVVTRWWRAPEVFLEAK 313          
BLAST of mRNA_H-elongata_contig114493.1152.1 vs. uniprot
Match: A0A7S1U762_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U762_9STRA)

HSP 1 Score: 124 bits (312), Expect = 7.150e-34
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 DLHHIIYSGQNLKEAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGKVSSCSPSGSGVAPDVEDSDTGNEVKLTEYVVTRWWRAPEVFL 327
            DLH +IYS Q+L + H+++FLYQILCGL Y+HSA V+HRDLKP+N+L+N+ CDLKLCDFGL+R+             V    ED +      LTEYVVTRW+RAPE+ L
Sbjct:    4 DLHRVIYSRQSLTDDHIKYFLYQILCGLRYIHSAEVLHRDLKPSNILLNSNCDLKLCDFGLSRT-------------VTVAAEDDNL-----LTEYVVTRWYRAPEIML 94          
BLAST of mRNA_H-elongata_contig114493.1152.1 vs. uniprot
Match: A0A7R9W1S5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W1S5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.190e-33
Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 DLHHIIYSGQNLKEAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGKVSSCSPSGSGVAPDVEDSDTGNEVKLTEYVVTRWWRAPEVFL 327
            DLH IIYS Q L   H+++FLYQIL  L Y+HSA V+HRDLKP+N+LVN+ CDLK+CDFGLAR             GV P+ ED  +G  + LTEYVVTRW+RAPE+ L
Sbjct:   18 DLHRIIYSKQPLSIDHVRYFLYQILRALKYIHSADVLHRDLKPSNLLVNSNCDLKVCDFGLAR-------------GVLPE-EDVRSGGSMLLTEYVVTRWYRAPEIML 112          
BLAST of mRNA_H-elongata_contig114493.1152.1 vs. uniprot
Match: W7TT92_9STRA (Mitogen-activated protein kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT92_9STRA)

HSP 1 Score: 132 bits (331), Expect = 8.570e-33
Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    1 DLHHIIYSGQNLKEAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGKVSSCSPSGSGVAPDVEDSDTGNEVKLTEYVVTRWWRAPEVFLEGE 336
            DLH +IYSGQ L E H+QFF+YQ++CGL ++HSA VIHRDLKP+N+L+N  CDLK+CDFGLAR +G                 D+ T     LTEYVVTRW+RAPE+ L  +
Sbjct:  217 DLHRVIYSGQTLTEEHIQFFMYQLMCGLKHIHSANVIHRDLKPSNILLNENCDLKICDFGLARDMGA----------------DAATEAANNLTEYVVTRWYRAPEIMLSSQ 312          
BLAST of mRNA_H-elongata_contig114493.1152.1 vs. uniprot
Match: A0A7S2CTE8_9STRA (Mitogen-activated protein kinase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTE8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.750e-32
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 DLHHIIYSGQNLKEAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGKVSSCSPSGSGVAPDVEDSDTGNEVKLTEYVVTRWWRAPEVFL 327
            DLH +IYS Q L   H+QFFLYQ++CGL Y+HSA V+HRDLKP+N+L+N  CDLKLCDFGL+R L                +E   T     LTEYVVTRW+RAPE+ L
Sbjct:  101 DLHRVIYSRQQLTNEHIQFFLYQMMCGLKYIHSAAVLHRDLKPSNILLNANCDLKLCDFGLSRGL----------------LEGEGTSG-ANLTEYVVTRWYRAPEIML 192          
BLAST of mRNA_H-elongata_contig114493.1152.1 vs. uniprot
Match: A0A7S3UIQ7_OXYMA (Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3UIQ7_OXYMA)

HSP 1 Score: 122 bits (307), Expect = 5.800e-32
Identity = 64/109 (58.72%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 DLHHIIYSGQNLKEAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGKVSSCSPSGSGVAPDVEDSDTGNEVKLTEYVVTRWWRAPEVFL 327
            DLH +I+S Q L E H Q+FLYQIL GL Y+HSA VIHRDLKPAN+LVN  CDL++CDFGLAR  GK               ED D      LT+YVVTRW+RAPEV L
Sbjct:  110 DLHRVIHSKQPLTEEHFQYFLYQILRGLLYLHSANVIHRDLKPANLLVNKNCDLQICDFGLARGFGK-------------HEEDQD------LTDYVVTRWYRAPEVIL 199          
BLAST of mRNA_H-elongata_contig114493.1152.1 vs. uniprot
Match: A0A7S0BYM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BYM0_9STRA)

HSP 1 Score: 123 bits (308), Expect = 7.840e-32
Identity = 62/111 (55.86%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 DLHHIIYSGQNLKEAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNTTCDLKLCDFGLARSLGKVSSCSPSGSGVAP--DVEDSDTGNEVKLTEYVVTRWWRAPEVFL 327
            DLH IIYS Q+L   H+Q+F+YQIL  L YMHSA V+HRDLKP+N+LVN+ CDLK+CD GLAR             GV P  D +    G  + LTEYVVTRW+RAPE+ L
Sbjct:   16 DLHRIIYSKQSLSIDHVQYFVYQILRALKYMHSANVLHRDLKPSNLLVNSNCDLKICDLGLAR-------------GVLPEDDAQGKKHGGSIMLTEYVVTRWYRAPEIML 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114493.1152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0I1_ECTSI1.590e-5878.91Mitogen-activated protein kinase n=1 Tax=Ectocarpu... [more]
A0A6H5JCV3_9PHAE1.010e-5574.81Mitogen-activated protein kinase n=1 Tax=Ectocarpu... [more]
A0A835ZKF4_9STRA8.440e-4472.32Mitogen-activated protein kinase n=1 Tax=Tribonema... [more]
A0A835ZD69_9STRA6.690e-4368.75Mitogen-activated protein kinase n=1 Tax=Tribonema... [more]
A0A7S1U762_9STRA7.150e-3455.05Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9W1S5_9STRA5.190e-3357.80Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
W7TT92_9STRA8.570e-3354.46Mitogen-activated protein kinase n=2 Tax=Monodopsi... [more]
A0A7S2CTE8_9STRA1.750e-3255.05Mitogen-activated protein kinase (Fragment) n=1 Ta... [more]
A0A7S3UIQ7_OXYMA5.800e-3258.72Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis m... [more]
A0A7S0BYM0_9STRA7.840e-3255.86Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114493contigH-elongata_contig114493:91..1578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.6
Seed ortholog evalue1.5e-49
Seed eggNOG ortholog2880.D7G0I1
EggNOG free text desc.MAP kinase activity
EggNOG OGsKOG0660@1,KOG0660@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size510
Cds size510
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114493.1152.1prot_H-elongata_contig114493.1152.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114493 91..1578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.156648-CDS-H-elongata_contig114493:90..2551622929661.156648-CDS-H-elongata_contig114493:90..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114493 91..255 +
1691679109.8066862-CDS-H-elongata_contig114493:90..2551691679109.8066862-CDS-H-elongata_contig114493:90..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114493 91..255 +
1622929661.1827652-CDS-H-elongata_contig114493:718..8711622929661.1827652-CDS-H-elongata_contig114493:718..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114493 719..871 +
1691679109.8177013-CDS-H-elongata_contig114493:718..8711691679109.8177013-CDS-H-elongata_contig114493:718..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114493 719..871 +
1622929661.2019684-CDS-H-elongata_contig114493:1386..15781622929661.2019684-CDS-H-elongata_contig114493:1386..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114493 1387..1578 +
1691679109.8285942-CDS-H-elongata_contig114493:1386..15781691679109.8285942-CDS-H-elongata_contig114493:1386..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114493 1387..1578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114493.1152.1

>prot_H-elongata_contig114493.1152.1 ID=prot_H-elongata_contig114493.1152.1|Name=mRNA_H-elongata_contig114493.1152.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
DLHHIIYSGQNLKEAHLQFFLYQILCGLHYMHSARVIHRDLKPANVLVNT
TCDLKLCDFGLARSLGKVSSCSPSGSGVAPDVEDSDTGNEVKLTEYVVTR
WWRAPEVFLEGELRHGDRCLVGRMHHGGDATTKASVHGVEHGADAPPSGS
VHRQAVRGRPGVCDQQEGV*
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mRNA from alignment at H-elongata_contig114493:91..1578+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114493.1152.1 ID=mRNA_H-elongata_contig114493.1152.1|Name=mRNA_H-elongata_contig114493.1152.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1488bp|location=Sequence derived from alignment at H-elongata_contig114493:91..1578+ (Himanthalia elongata Himel1 dioecious)
GACTTGCACCACATAATCTATTCCGGGCAGAATCTCAAAGAAGCGCACCT ACAGTTCTTCCTCTATCAGATCCTTTGTGGTCTTCACTACATGCACTCGG CAAGGGTGATCCACAGGGATCTCAAGCCGGCAAACGTCCTGGTCAACACG ACGTGCGACCTTAAGGTAAGTCAACATATGAAAAGCACAGCCGGCCTGGA ATGCGTTGTGCGCCTTTTGGCTCCCGTGGGATGGGAGCTTTTCTATTATG GTGCAAATAGGCGCGAAGTTCGATATATACTCCAGTTGGCCTCTCTCTCT TAGGTGCGTGACTTGTCCGTAGCGTGTCGACGCGTGCGGTGTTGGGAGCT ATCTCCCCGTCTCGAAGAACGTGCTAAGGCTGCCGCGAGTCTTGCCGTGT GTGCGATGTCGCTCCGGTAGGAAGGGAAAAGTCGCTTTAACATGAGGTGA TTCCCTTGAGTCGTGCGGCGCGATTGGTTTTGCGGTTCGGCTTCGAGCGT TCTTTACCCACGGCATGCCTAAAACTCGGAGATGCTTCTTGTGGATGCTC ATGCAAATGTCCCGTTTGCCATTGATAGTTATCCATCGTTATTTGGTGTT GTGTTTGGTGCCCCCGATGTCCATGAAGCTGTGCGATTTCGGGCTGGCGC GTAGTCTCGGCAAGGTGTCGTCTTGTTCGCCCAGCGGGTCGGGAGTTGCA CCAGACGTTGAGGATTCTGACACGGGGAACGAGGTTAAACTTACGGAGTA CGTGGTGACGCGATGGTGGCGAGCCCCGGAGGTGAGAAGCGAAAACCCAA CGCCAAAAAAACACTAAGGCCACCCGTGCGGTAGGTGTAAGTACTCTACG AACAGTACTTTTAGCTTCTGTGCAATAATAGTTTACAAAGTTACGTGGGA TCGGGGGAAGAAGCACAAGTGTGGATAGCGGGCAACAACCCGGGCACGAT GATGCGGCATCACTTCTTCCGCTCTCAATTTAGCCTCGGGTGCATCACTG CGGTATGGAGCATACTTGAGCTGATTGAGTACGTTTTGATGCACTCTTGT TTGATTACATTTTTATTATCTTGTATTGATTGACTGCGATTCAAGTCTGA GGAGATTGATGACGGTTGGAAGCTGCAACCGCTGTGCGGTGGTGGGAAAT GATATTGCATGATATTGCGTGACATGGCAAGTGAACTTAGGCCCTCTTCC GGTTGTCTTGTACTCTCTGTCGGTCTTTTTTTTTTGTCGTTTCGTTTGTC TGTGCTGCTGTCAACACTTCGTTTTGTCGGTCTTTTTTTTTTTAAGGTTT TCCTCGAGGGCGAACTACGGCACGGCGATCGATGTCTGGTCGGCAGGATG CATCATGGCGGAGATGCTACAACGAAAGCCTCTGTTCATGGGGTCGAACA CGGCGCAGATGCTCCGCCTAGTGGTTCAGTTCACCGGCAAGCCGTCCGAG GCAGACCTGGCGTTTGTGACCAACAAGAAGGTGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig114493:91..1578+

>mRNA_H-elongata_contig114493.1152.1 ID=mRNA_H-elongata_contig114493.1152.1|Name=mRNA_H-elongata_contig114493.1152.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig114493:91..1578+ (Himanthalia elongata Himel1 dioecious)
GACTTGCACCACATAATCTATTCCGGGCAGAATCTCAAAGAAGCGCACCT
ACAGTTCTTCCTCTATCAGATCCTTTGTGGTCTTCACTACATGCACTCGG
CAAGGGTGATCCACAGGGATCTCAAGCCGGCAAACGTCCTGGTCAACACG
ACGTGCGACCTTAAGGACTTGCACCACATAATCTATTCCGGGCAGAATCT
CAAAGAAGCGCACCTACAGTTCTTCCTCTATCAGATCCTTTGTGGTCTTC
ACTACATGCACTCGGCAAGGGTGATCCACAGGGATCTCAAGCCGGCAAAC
GTCCTGGTCAACACGACGTGCGACCTTAAGCTGTGCGATTTCGGGCTGGC
GCGTAGTCTCGGCAAGGTGTCGTCTTGTTCGCCCAGCGGGTCGGGAGTTG
CACCAGACGTTGAGGATTCTGACACGGGGAACGAGGTTAAACTTACGGAG
TACGTGGTGACGCGATGGTGGCGAGCCCCGGAGCTGTGCGATTTCGGGCT
GGCGCGTAGTCTCGGCAAGGTGTCGTCTTGTTCGCCCAGCGGGTCGGGAG
TTGCACCAGACGTTGAGGATTCTGACACGGGGAACGAGGTTAAACTTACG
GAGTACGTGGTGACGCGATGGTGGCGAGCCCCGGAGGTTTTCCTCGAGGG
CGAACTACGGCACGGCGATCGATGTCTGGTCGGCAGGATGCATCATGGCG
GAGATGCTACAACGAAAGCCTCTGTTCATGGGGTCGAACACGGCGCAGAT
GCTCCGCCTAGTGGTTCAGTTCACCGGCAAGCCGTCCGAGGCAGACCTGG
CGTTTGTGACCAACAAGAAGGTGTGTAGGTTTTCCTCGAGGGCGAACTAC
GGCACGGCGATCGATGTCTGGTCGGCAGGATGCATCATGGCGGAGATGCT
ACAACGAAAGCCTCTGTTCATGGGGTCGAACACGGCGCAGATGCTCCGCC
TAGTGGTTCAGTTCACCGGCAAGCCGTCCGAGGCAGACCTGGCGTTTGTG
ACCAACAAGAAGGTGTGTAG
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