mRNA_H-elongata_contig100086.12.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100086.12.1
Unique NamemRNA_H-elongata_contig100086.12.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: D8LSW9_ECTSI (Peptidyl-tRNA hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW9_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.610e-54
Identity = 89/115 (77.39%), Postives = 104/115 (90.43%), Query Frame = 1
Query:    1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345
            V+DFFKLP+NAA++LVDEVALDFGQLRLKGKGG GGHNGLKS+QAHLKTP+YTRLRIG+G  K +     LSD+VLGEFTR+EK+ELD+VIA+ACDAVE W+EEED+ KVMTRFN
Sbjct:   61 VMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEA---LSDHVLGEFTRTEKKELDNVIADACDAVEHWVEEEDMAKVMTRFN 172          
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A6H5JIA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA6_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 4.230e-52
Identity = 90/115 (78.26%), Postives = 104/115 (90.43%), Query Frame = 1
Query:    1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345
            V+DFFKLP+NAA++LVDEVALDFGQLRLKGKGG GGHNGLKS+QAHLKTP+YTRLRIG+G  K +     LSD+VLGEFTR+EK+ELD+VIA+ACDAVE WIEEED+ KVMTRFN
Sbjct:  250 VMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEA---LSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFN 361          
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A4D9CWV7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV7_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.550e-32
Identity = 62/115 (53.91%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345
            V+D+FKLP+++ +++VDEVALD GQ+RL+  G  GGHNGLKSI++ LK  DY RLRIG+GG      PG + D+VLG+F+RSE++ LD ++ +A +A+E WIE+++ DKVM R N
Sbjct:  821 VLDYFKLPVSSVLVVVDEVALDIGQIRLRQTGSAGGHNGLKSIESCLKCKDYNRLRIGVGG----AAPGSMVDHVLGQFSRSERKVLDDMLIDAVEAIEDWIEDDNTDKVMNRVN 931          
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A836CKJ3_9STRA (Peptidyl-tRNA hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKJ3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.930e-32
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNGR 351
            V DFFKL  +  ++L D+VALDFG LRL+ KG  GGHNGLKS+Q HL T DY RLRIG+G  ++      L  +VLGEF++ E++ELD V+++A   VE WI E+D   VMT  NG+
Sbjct:   61 VTDFFKLNADHVLVLTDDVALDFGALRLRMKGSAGGHNGLKSLQQHLGTQDYARLRIGVGAPRK-----DLVSHVLGEFSKVERKELDMVVSDAASVVEHWIAEDDAALVMTAINGK 172          
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A7V4KMS0_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7V4KMS0_9BACT)

HSP 1 Score: 115 bits (287), Expect = 6.480e-28
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   22 PINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345
            P +  ++LVD+VAL  G  RL+G G PGGHNGLKSI+A L+  DY RLRIG+G      G   L+D+VLGEF+R+E+R L+  +    DA ECW+EE  I+K M+RFN
Sbjct:   83 PASELLVLVDDVALPLGTFRLRGAGSPGGHNGLKSIEATLRRRDYARLRIGVGPVP--AGVDDLADFVLGEFSRAERRTLEDQLDRMADACECWVEE-GIEKAMSRFN 187          
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A6M1YZS9_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1YZS9_9BACT)

HSP 1 Score: 114 bits (284), Expect = 2.110e-27
Identity = 51/102 (50.00%), Postives = 76/102 (74.51%), Query Frame = 1
Query:    7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEE 312
            D++K+P++  +++ D+VAL FGQLR++ KG PGGHNGLKS+QA+L T +YTRLR+G+G + +    G LSDYVLG+FT  E++ L  V+  +  A+E W+ E
Sbjct:   83 DYYKVPMSQLIVVTDDVALPFGQLRIRQKGSPGGHNGLKSVQAYLGTEEYTRLRVGVGDQSK----GELSDYVLGKFTAEEQQLLPDVVDRSTRAIELWLTE 180          
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A2V5MGH1_9BACT (Aminoacyl-tRNA hydrolase (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5MGH1_9BACT)

HSP 1 Score: 112 bits (281), Expect = 3.000e-27
Identity = 52/118 (44.07%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACG---PGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNGR 351
            +F+++     ++++D+  L FG++R++ +G  GGH+GL+SI+AHL T  Y RLRIGIG E  ACG   P  +S YVL  F  ++   L+ V+  ACD VECW++E  + K M+R+NGR
Sbjct:   48 NFYRVARERLLVVMDDADLPFGEIRMRAEGSSGGHHGLESIEAHLGTRQYARLRIGIGREALACGQHAPREISGYVLAPFRAADAELLEKVLTRACDQVECWLDE-GVGKAMSRYNGR 164          
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A7X0LLG6_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LLG6_9BACT)

HSP 1 Score: 113 bits (282), Expect = 3.280e-27
Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   10 FFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNG 348
            F+KL     +ILVDE+ALD GQ+RL+  G PGGHNGLK ++  L T DY RLR+GIG   RA    P  D+VLG FT  +  E++  + +ACD +E W+E+  I+  MT+FNG
Sbjct:   78 FYKLEPEDILILVDEIALDVGQIRLRASGSPGGHNGLKDLERALGTRDYPRLRLGIGPRTRA----PQVDFVLGRFTGEQLDEMNFTLGKACDCIESWLED-GIELAMTKFNG 185          
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A7X5Q305_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7X5Q305_9BACT)

HSP 1 Score: 110 bits (274), Expect = 5.250e-26
Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEE 312
            D++K+PI   +++ D+VAL FGQLRL+ +G  GGHNGL+SI+AHL T +Y+RLRIG+   +     G L+DYVL +F++ E+R L  V+A A +A+E W+ E
Sbjct:   80 DYYKIPIERVIVVTDDVALPFGQLRLRAQGSCGGHNGLRSIEAHLGTQEYSRLRIGVSNREE----GDLADYVLSKFSQEEQRALPDVVASAIEALELWLTE 177          
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A7W1VQY8_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VQY8_9BACT)

HSP 1 Score: 107 bits (267), Expect = 7.660e-25
Identity = 52/114 (45.61%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNG 348
            +F+K+P    ++LVD+  L  GQ+RL+GKG  GGH+G+ SI+ HL T D+ RLRIGIG  ++      +++YVLG+F   E   L  V+  A D VE W++E  I+K MT+FNG
Sbjct:   81 EFYKVPPKRVLVLVDDADLPLGQIRLRGKGSSGGHHGIDSIEQHLGTQDFPRLRIGIG--RKQSNVREITNYVLGQFGADENELLGKVLTRASDQVESWLDE-GIEKAMTKFNG 191          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW9_ECTSI2.610e-5477.39Peptidyl-tRNA hydrolase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIA6_9PHAE4.230e-5278.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CWV7_9STRA2.550e-3253.91Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836CKJ3_9STRA5.930e-3252.99Peptidyl-tRNA hydrolase n=1 Tax=Tribonema minus Ta... [more]
A0A7V4KMS0_9BACT6.480e-2852.78Peptidyl-tRNA hydrolase n=1 Tax=Gemmatimonadetes b... [more]
A0A6M1YZS9_9BACT2.110e-2750.00Peptidyl-tRNA hydrolase n=1 Tax=Chlamydiae bacteri... [more]
A0A2V5MGH1_9BACT3.000e-2744.07Aminoacyl-tRNA hydrolase (Fragment) n=1 Tax=Verruc... [more]
A0A7X0LLG6_9BACT3.280e-2749.56Peptidyl-tRNA hydrolase n=1 Tax=Algisphaera agaril... [more]
A0A7X5Q305_9BACT5.250e-2649.02Peptidyl-tRNA hydrolase n=1 Tax=Chlamydiae bacteri... [more]
A0A7W1VQY8_9BACT7.660e-2545.61Peptidyl-tRNA hydrolase n=1 Tax=Verrucomicrobia ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100086contigH-elongata_contig100086:2..1208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.6e-38
Seed eggNOG ortholog2880.D8LSW9
KEGG koko:K01056
EggNOG free text desc.aminoacyl-tRNA hydrolase activity
EggNOG OGsCOG0193@1,KOG2255@2759
EC3.1.1.29
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Hectar predicted targeting categoryother localisation
Exons2
Model size803
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100086.12.1prot_H-elongata_contig100086.12.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100086 451..1172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.5551047-UTR-H-elongata_contig100086:1..4501622929543.5551047-UTR-H-elongata_contig100086:1..450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100086 2..450 -
1691679062.07123-UTR-H-elongata_contig100086:1..4501691679062.07123-UTR-H-elongata_contig100086:1..450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100086 2..450 -
1622929543.607057-UTR-H-elongata_contig100086:1172..12081622929543.607057-UTR-H-elongata_contig100086:1172..1208Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100086 1173..1208 -
1691679062.143997-UTR-H-elongata_contig100086:1172..12081691679062.143997-UTR-H-elongata_contig100086:1172..1208Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100086 1173..1208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.57383-CDS-H-elongata_contig100086:450..6111622929543.57383-CDS-H-elongata_contig100086:450..611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100086 451..611 -
1691679062.1041415-CDS-H-elongata_contig100086:450..6111691679062.1041415-CDS-H-elongata_contig100086:450..611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100086 451..611 -
1622929543.5892248-CDS-H-elongata_contig100086:1015..11721622929543.5892248-CDS-H-elongata_contig100086:1015..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100086 1016..1172 -
1691679062.1322706-CDS-H-elongata_contig100086:1015..11721691679062.1322706-CDS-H-elongata_contig100086:1015..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100086 1016..1172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100086.12.1

>prot_H-elongata_contig100086.12.1 ID=prot_H-elongata_contig100086.12.1|Name=mRNA_H-elongata_contig100086.12.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGE
KRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMT
RFNGR*
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mRNA from alignment at H-elongata_contig100086:2..1208-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100086.12.1 ID=mRNA_H-elongata_contig100086.12.1|Name=mRNA_H-elongata_contig100086.12.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1207bp|location=Sequence derived from alignment at H-elongata_contig100086:2..1208- (Himanthalia elongata Himel1 dioecious)
GTGGTCGATTTCTTCAAGCTTCCGATAAACGCGGCGATGATCCTCGTGGA CGAAGTAGCACTAGACTTCGGGCAGCTCCGACTCAAGGGGAAGGGCGGCC CTGGCGGCCACAACGGTCTCAAAAGCATACAGGCACACCTCAAGACGCCC GACTACACCCGTCTAAGGATAGGCATCGGAGGTGAGAAACGTGGTTCGCG GTACACAGTCCGGAGGGAAGAGAAGGGAGAATTGTCTACTACTATGGAAA CTGGTCAATGGTTTCATGTTCGCCATGGAAGAAACGTCTCGAGATGAAAA CATGCTCGTGATGAGGGCATGACACGCAGTGTCGGTACTCCGTATGCTCA GGTACTAGGCTAAATTCATGGATAAGATCAAGTTCACTTGATGCGGCTGT TGTATCTGGTTTTCTCGTGTGCATCGCGACCTCTCGGAGACGCTGAAACT CCGACGATCTTTCCTCAGCTCCTATTTCGCCCCCCCCCCCCTCTCCCCCG TCGATTCAGCCGGCTTGAAAGAGCGCTCCACGGCAAGCTCCTCGTCCCCC AATCCTGACCTGACCTGATGAACCGCGCACGCCTTCGTTTTGACCAGCTT GCGGCCCGGGTCCGTTGTCAGACTACGTGCTGGGAGAGTTCACAAGGTCG GAAAAGAGGGAACTGGACAGCGTGATCGCGGAGGCCTGCGACGCAGTAGA ATGCTGGATCGAGGAAGAGGACATAGACAAGGTCATGACACGCTTCAACG GTCGATGACAGAACCAGCAGCTGTGAAGTCCCCGCGTCGCGAGCCACGAT AGCACGGTAGCGGGGGCGTCGCGTAACCGAAGAAAAATCCCGTGCAGGCT TGTAGAGAGTGGCTGGGAAGGCGGCTGCCGTCTCACGTGAAATGTTTTTG ATAGTTAACTATTAATAGTTCAGCATATATAGCATATATCACCTCCGATA CTGTCTTTACTGTATCGCAAATGTCCACGCTACCAATAGCGGGTGTGGGA AAAGAGAGACGCACAATAATTGTTCTTTGAGGACTGCTGGTTCAGTCTCG GTGGACTCGCAATTGCGTGACCTGATGGACTCAGGATTGGCCCGATGGCG GTTGACGGTAGATATGGACGCCATCGCAGAAAACGAGAGGATCCCGGGAG TATGCACCAGATTCAACCTGGGTTAACAGCCGGTCGCCCCGGTGGTGTAA GGGTCAA
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Coding sequence (CDS) from alignment at H-elongata_contig100086:2..1208-

>mRNA_H-elongata_contig100086.12.1 ID=mRNA_H-elongata_contig100086.12.1|Name=mRNA_H-elongata_contig100086.12.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig100086:2..1208- (Himanthalia elongata Himel1 dioecious)
ATGATCCTCGTGGACGAAGTAGCACTAGACTTCGGGCAGCTCCGACTCAA
GGGGAAGGGCGGCCCTGGCGGCCACAACGGTCTCAAAAGCATACAGGCAC
ACCTCAAGACGCCCGACTACACCCGTCTAAGGATAGGCATCGGAGGTGAG
AAACGTGATGATCCTCGTGGACGAAGTAGCACTAGACTTCGGGCAGCTCC
GACTCAAGGGGAAGGGCGGCCCTGGCGGCCACAACGGTCTCAAAAGCATA
CAGGCACACCTCAAGACGCCCGACTACACCCGTCTAAGGATAGGCATCGG
AGGTGAGAAACGTGCTTGCGGCCCGGGTCCGTTGTCAGACTACGTGCTGG
GAGAGTTCACAAGGTCGGAAAAGAGGGAACTGGACAGCGTGATCGCGGAG
GCCTGCGACGCAGTAGAATGCTGGATCGAGGAAGAGGACATAGACAAGGT
CATGACACGCTTCAACGGTCGATGACTTGCGGCCCGGGTCCGTTGTCAGA
CTACGTGCTGGGAGAGTTCACAAGGTCGGAAAAGAGGGAACTGGACAGCG
TGATCGCGGAGGCCTGCGACGCAGTAGAATGCTGGATCGAGGAAGAGGAC
ATAGACAAGGTCATGACACGCTTCAACGGTCGATGA
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