mRNA_H-elongata_contig11419.1133.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11419.1133.1 vs. uniprot
Match: A0A6H5JSY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSY9_9PHAE) HSP 1 Score: 115 bits (287), Expect = 3.300e-27 Identity = 71/151 (47.02%), Postives = 86/151 (56.95%), Query Frame = 1
Query: 1 DRAIVLPLDVRDDFILPDAVRNAEAMLGRPIDMVFHCQAG---ITSWSGS-----DFDVNHVRRHLQVMDSILWGAVGLTKAVLPSMLDRQEGHIIVLAGGSSPLLTSEGRSAE--TASRSAVQGYFDSLRAEVARDRIKIT-VVHRPGLT 420
DR +++PLD RD FIL A AE ML RP+ MVFHCQ G W D DV +L+ GA+ LTKAVLPSMLD QEGH++VL G S E S +S+ A +GYFD LR EV+RD +KIT V+H G T
Sbjct: 307 DRVMIMPLDARDTFILDRAASKAEEMLDRPVGMVFHCQGGGVVAGEWDEEEEEEGDLDVEDASGNLR-------GAIALTKAVLPSMLDEQEGHLVVLGGDDSFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTVLHHSGCT 450
BLAST of mRNA_H-elongata_contig11419.1133.1 vs. uniprot
Match: D8LHS3_ECTSI (Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS3_ECTSI) HSP 1 Score: 114 bits (284), Expect = 1.110e-26 Identity = 69/150 (46.00%), Postives = 89/150 (59.33%), Query Frame = 1
Query: 1 DRAIVLPLDVRDDFILPDAVRNAEAMLGRPIDMVFHCQAG-ITSWSGSDFDVNHVRRHLQVMD----SILWGAVGLTKAVLPSMLDRQEGHIIVLAGGSSPLLTSEGRSAETA----SRSAVQGYFDSLRAEVARDRIKIT-VVHRPGLT 420
DR +++PLDVRD FIL A R AE ML RP+ MVFHCQ G + + + D +D L GA+ LTKAVLPSMLD QEGH++VL G TS ++ A S+ A +GYFD LR EV+RD +K+T ++H G T
Sbjct: 371 DRVMIMPLDVRDTFILDHATRKAEDMLDRPVGMVFHCQGGGVVAGEWDEEDEXXXXXXXXDLDLEASGNLRGAISLTKAVLPSMLDEQEGHLVVLGGDD--FFTSREETSSPAGVVSSKHAARGYFDRLRREVSRDGVKVTTLLHHSGCT 518
BLAST of mRNA_H-elongata_contig11419.1133.1 vs. uniprot
Match: UPI001A9422B9 (SDR family oxidoreductase n=1 Tax=Fibrella sp. HMF5335 TaxID=2817060 RepID=UPI001A9422B9) HSP 1 Score: 81.6 bits (200), Expect = 5.510e-16 Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = 1
Query: 1 DRAIVLPLDVRDDFILPDAVRNAEAMLGRPIDMVFHCQAGITSWS-GSDFDVNHVRRHLQVMDSILWGAVGLTKAVLPSMLDRQEGHIIVLAGGSSPLLTSEGRSAETASRSAVQGYFDSLRAEVARDRIKITVV 402
D +VLPLDV D L + V+ A GR +D VF AGIT S D D RR +MD +GAV LT+AVLP +L ++ GH +V + + + + RS AS+ A+ G+FDSLRAEVA + +++T+V
Sbjct: 53 DAVLVLPLDVTDAADLAEKVQTVLARFGR-VDYVFQ-NAGITQRSLVQDTDPVVYRR---LMDVNFFGAVALTQAVLPQLLTQKSGHFVVTSSVAGKIGVKQ-RSGYCASKHALHGFFDSLRAEVANEGLRVTIV 181
BLAST of mRNA_H-elongata_contig11419.1133.1 vs. uniprot
Match: A0A6L9LA52_9BACT (SDR family oxidoreductase n=1 Tax=Spirosoma terrae TaxID=1968276 RepID=A0A6L9LA52_9BACT) HSP 1 Score: 80.9 bits (198), Expect = 1.090e-15 Identity = 58/141 (41.13%), Postives = 81/141 (57.45%), Query Frame = 1
Query: 10 IVLPLDVRDDFILPDAVRNAEAMLGRPIDMVFHCQAGITSWS---GSDFDVNHVRRHLQVMDSILWGAVGLTKAVLPSMLDRQEGHIIVLAGGSSPLLTSEGRSAETASRSAVQGYFDSLRAEVARDRIKITVVHRPGLTK 423
+VLPLD+ D LP V + GR ID +F AGIT S +DF V + ++MD +G V LTKAVLP ML ++ GH +V + + L T + RS AS+ A+ G+FDSLRAE+ + + +T+V PG K
Sbjct: 58 LVLPLDITDTDSLPAHVATVQQHFGR-IDYIFQ-NAGITQRSTVLDTDFSV-----YKRLMDINFFGVVALTKAVLPIMLRQRSGHFVVTSSVAGKLGTKQ-RSGYCASKHALHGFFDSLRAEIYEEGLGVTIVC-PGYIK 189
BLAST of mRNA_H-elongata_contig11419.1133.1 vs. uniprot
Match: A0A2T3HPX3_9SPHI (Short chain dehydrogenase n=2 Tax=Pedobacter yulinensis TaxID=2126353 RepID=A0A2T3HPX3_9SPHI) HSP 1 Score: 80.1 bits (196), Expect = 1.970e-15 Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 1
Query: 13 VLPLDVRDDFILPDAVRNAEAMLGRPIDMVFHCQAGITSWSGSDFDVNHVRRHLQVMDSILWGAVGLTKAVLPSMLDRQEGHIIVLAGGSSPLLTSEGRSAETASRSAVQGYFDSLRAEVARDRIKITVVHRPGLTK 423
VLP+D+ L D NA + GR ID++ + AGI S G + + H ++M++ WG V L+KAVLP+M+ + GH++ ++ + L T + RSA AS+ A+ GYFDSLRAE+ D I +T+V PG K
Sbjct: 55 VLPVDLEQADTLVDKAANALRIYGR-IDLLIN-SAGI-SQRGRALETSSETEH-RIMNTNFWGTVALSKAVLPAMVAARSGHLVCISSIAGKLGT-KNRSAYAASKHALHGYFDSLRAELHADNINVTLVC-PGYIK 185
BLAST of mRNA_H-elongata_contig11419.1133.1 vs. uniprot
Match: A0A1W6E9E5_9BACT (Short-chain dehydrogenase n=2 Tax=Fibrella TaxID=861914 RepID=A0A1W6E9E5_9BACT) HSP 1 Score: 80.1 bits (196), Expect = 2.120e-15 Identity = 57/134 (42.54%), Postives = 77/134 (57.46%), Query Frame = 1
Query: 1 DRAIVLPLDVRDDFILPDAVRNAEAMLGRPIDMVFHCQAGITSWSGSDFDVNHVRRHLQVMDSILWGAVGLTKAVLPSMLDRQEGHIIVLAGGSSPLLTSEGRSAETASRSAVQGYFDSLRAEVARDRIKITVV 402
DR ++LPLDV D+ +P V GR ID VF AGIT S + V R L M+ +G V LT+AVLP ML ++ GH +V + S + + RS AS+ A+ G+FDSLRAEVA D + +T+V
Sbjct: 54 DRIMILPLDVTDETSIPALVAAVLVRFGR-IDYVFQ-NAGITQRSFVNDTNFAVYRRL--MEVNFFGVVALTQAVLPVMLGQKSGHFVVTSSVSGKIGVKQ-RSGYCASKHALHGFFDSLRAEVASDGLHVTLV 182
BLAST of mRNA_H-elongata_contig11419.1133.1 vs. uniprot
Match: A0A6M1TGK5_9BACT (SDR family oxidoreductase n=1 Tax=Aliifodinibius halophilus TaxID=1736908 RepID=A0A6M1TGK5_9BACT) HSP 1 Score: 79.7 bits (195), Expect = 2.910e-15 Identity = 57/138 (41.30%), Postives = 83/138 (60.14%), Query Frame = 1
Query: 13 VLPLDVRDDFILPDAVRNAEAMLGRPIDMVFHCQAGITSWSG-SDFDVNHVRRHLQVMDSILWGAVGLTKAVLPSMLDRQEGHIIVLAGGSSPLLTSEGRSAETASRSAVQGYFDSLRAEVARDRIKITVVHRPGLTK 423
+LP+D+ + LP+ R A G+ ID +F+ GI+ S ++ D+ R+ VM+ +G+V LTK VLPSM+DRQ GHIIV + T RS+ AS+ A+ GYFDSLR EV +D I++++V PG K
Sbjct: 58 ILPIDLAEAEALPEKARQALDTFGQ-IDYLFN-NGGISQRSKVTETDMEVTRK---VMEINFFGSVALTKTVLPSMIDRQTGHIIVTSSVMGKFGTRL-RSSYAASKHALHGYFDSLRQEVHKDNIRVSLVC-PGYIK 188
BLAST of mRNA_H-elongata_contig11419.1133.1 vs. uniprot
Match: UPI001A94446E (SDR family oxidoreductase n=1 Tax=Fibrella sp. HMF5405 TaxID=2817061 RepID=UPI001A94446E) HSP 1 Score: 79.3 bits (194), Expect = 4.120e-15 Identity = 54/134 (40.30%), Postives = 79/134 (58.96%), Query Frame = 1
Query: 1 DRAIVLPLDVRDDFILPDAVRNAEAMLGRPIDMVFHCQAGITSWSGSDFDVNHVRRHLQVMDSILWGAVGLTKAVLPSMLDRQEGHIIVLAGGSSPLLTSEGRSAETASRSAVQGYFDSLRAEVARDRIKITVV 402
D+ ++LPLDV D+ +P+ V + G+ ID VF AGI+ S V R L M+ +GAV LT+A LP ML +++GH +V + S + + RS AS+ A+ G+FDSLRAEVA D + +T+V
Sbjct: 54 DQLLILPLDVTDEASIPERVNDVLIRFGK-IDYVF-LNAGISQRSFVQETNFAVYRRL--MEVNFFGAVALTQAALPVMLAQKKGHFVVTSSVSGKIGVRQ-RSGYCASKHALHGFFDSLRAEVANDGLNVTIV 182
BLAST of mRNA_H-elongata_contig11419.1133.1 vs. uniprot
Match: A0A2K8Z8U8_9BACT (Short chain dehydrogenase n=1 Tax=Spirosoma pollinicola TaxID=2057025 RepID=A0A2K8Z8U8_9BACT) HSP 1 Score: 79.0 bits (193), Expect = 5.900e-15 Identity = 55/134 (41.04%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 10 IVLPLDVRDDFILPDAVRNAEAMLGRPIDMVFHCQAGITSWSG---SDFDVNHVRRHLQVMDSILWGAVGLTKAVLPSMLDRQEGHIIVLAGGSSPLLTSEGRSAETASRSAVQGYFDSLRAEVARDRIKITVV 402
+VLP+D+ + LPD V GR ID VF AGIT S +DF V + ++MD +G V LTKA+LP ML +Q+G+ IV + + L T + RS AS+ A+ G+FDSLRAE +++T+V
Sbjct: 60 LVLPMDMSNIESLPDCVEAVRQRFGR-IDYVFQ-NAGITQRSAVVDTDFSV-----YKRIMDVNFFGVVALTKAILPIMLAQQKGYFIVTSSVAGKLATKQ-RSGYCASKHALHGFFDSLRAETHAAGLRVTLV 185
BLAST of mRNA_H-elongata_contig11419.1133.1 vs. uniprot
Match: A0A258WSC5_9SPHI (Short chain dehydrogenase n=2 Tax=Sphingobacteriia TaxID=117747 RepID=A0A258WSC5_9SPHI) HSP 1 Score: 78.6 bits (192), Expect = 7.790e-15 Identity = 52/138 (37.68%), Postives = 84/138 (60.87%), Query Frame = 1
Query: 13 VLPLDVRDDFILPDAVRNAEAMLGRPIDMVFHCQAGITSWS-GSDFDVNHVRRHLQVMDSILWGAVGLTKAVLPSMLDRQEGHIIVLAGGSSPLLTSEGRSAETASRSAVQGYFDSLRAEVARDRIKITVVHRPGLTK 423
VLPLD+ + L D A + GR +D++ H G++ S D D++ ++ +M+ WGA+ LTKA++PSM+ Q GHI++++ T + RSA +AS+ A+ GYFDSLR+E+ +IKI+++ PG K
Sbjct: 58 VLPLDLENTLELEDKAMAALKIFGR-VDIIIH-SGGVSQRSLAMDTDLDVAKK---IMNINFWGAIALTKALIPSMISNQSGHIVIISSLVGKFGT-KFRSAYSASKHALHGYFDSLRSEID-PKIKISIIC-PGFIK 187 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11419.1133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11419.1133.1 >prot_H-elongata_contig11419.1133.1 ID=prot_H-elongata_contig11419.1133.1|Name=mRNA_H-elongata_contig11419.1133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp DRAIVLPLDVRDDFILPDAVRNAEAMLGRPIDMVFHCQAGITSWSGSDFDback to top mRNA from alignment at H-elongata_contig11419:1256..2577+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11419.1133.1 ID=mRNA_H-elongata_contig11419.1133.1|Name=mRNA_H-elongata_contig11419.1133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1322bp|location=Sequence derived from alignment at H-elongata_contig11419:1256..2577+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11419:1256..2577+ >mRNA_H-elongata_contig11419.1133.1 ID=mRNA_H-elongata_contig11419.1133.1|Name=mRNA_H-elongata_contig11419.1133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig11419:1256..2577+ (Himanthalia elongata Himel1 dioecious)back to top |