mRNA_H-elongata_contig114042.1122.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114042.1122.1
Unique NamemRNA_H-elongata_contig114042.1122.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114042.1122.1 vs. uniprot
Match: A0A6P8H386_ACTTE (uncharacterized protein LOC116287377 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H386_ACTTE)

HSP 1 Score: 57.8 bits (138), Expect = 4.970e-8
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  169 KSTYIKNAFGVLLRDKPSILLRWKERFQELLNAKSPT--LHASILDGIEQLPEHAPLAA-EPTLEEVKEAVGKLGNGKAVGVDNVCGELL 429
            +ST ++N  G  L  K  +   W E F+E+ N + P   + +   +G E       +A  EPT+ EVKEAV KL NGKA+G+DN+  ELL
Sbjct:   18 QSTAVENKNGNFLSMKSEVQATWMEHFKEVPNREQPANPITSEEENGFEFSAVMEEIAVNEPTIGEVKEAVKKLKNGKALGIDNITAELL 107          
BLAST of mRNA_H-elongata_contig114042.1122.1 vs. uniprot
Match: A0A8B6E1J6_MYTGA (Blast:Craniofacial development protein 2 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6E1J6_MYTGA)

HSP 1 Score: 59.7 bits (143), Expect = 1.150e-7
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   70 ENTARTAELTRERNQAG-LYQHIKSLELEGKRGCKSTYIKNAFGVLLRDKPSILLRWKERFQELLNAKSPTLHASI--LDGIEQLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGVDNVCGELL 429
            +N A++AE    R +   LY   K +     RG +   +K+  G ++  +   L RWKE F+E+LNAK P + A I   D ++   E       PT+EE+ +++  L NGKA G+DN+  ELL
Sbjct:    8 DNIAKSAEEAANRGEQNKLYMLSKKISNSSMRGNRP--VKSKEGHVITSEKEQLERWKEHFEEILNAKDPPVLADIHPSDVVDMNIE------PPTIEEIIKSIKALSNGKAPGIDNIQAELL 122          
BLAST of mRNA_H-elongata_contig114042.1122.1 vs. uniprot
Match: UPI001F135E6E (uncharacterized protein LOC124542503 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F135E6E)

HSP 1 Score: 59.7 bits (143), Expect = 1.210e-7
Identity = 37/86 (43.02%), Postives = 46/86 (53.49%), Query Frame = 1
Query:  172 STYIKNAFGVLLRDKPSILLRWKERFQELLNAKSPTLHASILDGIEQLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGVDNVCGELL 429
            S  IK+  G LL  K  +L RW E F  LLN          L  + +LP+   L   P+L+EV EA+    N KAVGVDN+ GELL
Sbjct:  452 SVPIKSTNGTLLVSKEDVLNRWSEHFNNLLNVDR-LADFEYLRTLPELPKREDLVQPPSLQEVIEAIKAQKNKKAVGVDNIPGELL 536          
BLAST of mRNA_H-elongata_contig114042.1122.1 vs. uniprot
Match: A0A8M1KV33_CLUHA (zinc finger protein 883-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KV33_CLUHA)

HSP 1 Score: 58.5 bits (140), Expect = 2.910e-7
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  124 YQHIKSLELEGKRGCKSTYIKNAFGV-LLRDKPSILLRWKERFQELLNAKSPTLHASILDGIEQLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGVDNVCGELL 429
            Y  +KS++  G      T +K A G+ +L+D+ S+L RW E F  LLN  S   H +ILD + +LP    L   PT  EV  AV  L N K+ G+DN+  ELL
Sbjct:   26 YNAVKSID--GPTNHCITPLKTADGLRVLKDQSSVLERWAEHFNTLLNRDSEADH-TILDQLPELPPIDILNQPPTFLEVLSAVRSLKNNKSPGMDNIPAELL 125          
BLAST of mRNA_H-elongata_contig114042.1122.1 vs. uniprot
Match: A0A8K0NUE5_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0NUE5_LADFU)

HSP 1 Score: 53.1 bits (126), Expect = 1.570e-5
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  181 IKNAFGVLLRDKPSILLRWKERFQELLNAKSPTLHASILDGIEQLPEHAPLAAEPTLE-EVKEAVGKLGNGKAVGVDNVCGEL 426
            IK+A GV++R+   +  RWKE F +LLN ++P L     DG E       LA +     EVK A+ K+ NGKAVG D +  E+
Sbjct:  118 IKDASGVIIREDGDVRKRWKEYFHKLLNEENPRLRNEEGDGNE-------LAVQDMSRVEVKAALKKVKNGKAVGADQIPVEI 193          
BLAST of mRNA_H-elongata_contig114042.1122.1 vs. uniprot
Match: A0A8D8R2N7_9HEMI (Craniofacial development protein 2 n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8R2N7_9HEMI)

HSP 1 Score: 52.4 bits (124), Expect = 4.150e-5
Identity = 43/144 (29.86%), Postives = 73/144 (50.69%), Query Frame = 1
Query:   10 KATDKAFKRAKHAELQSFLRENTARTAELTRERNQAGLYQHIKSLELEGKRGCKSTY--IKNAFGVLLRDKPSILLRWKERFQELLNA--KSPTLHASILDGIEQLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGVDNVCGELL 429
            K + K  +R K   L+  ++E  A    L++E  Q   Y  +  +    K+G + T    ++A G +L +  ++L RW + F+ELLN   + PT+        EQ+ E   +   PT  E+++A+ K+ N +A G DN+  ELL
Sbjct:  366 KESKKIMRRKKREALKEKIKEIDA----LSKENEQRKFYAAVNRM----KKGFQPTVNACRDANGEMLTNDETVLKRWAQHFEELLNEDERIPTVRIEE----EQITEEDDMENMPTRSEIQKAIQKMKNNRAPGNDNITAELL 497          
BLAST of mRNA_H-elongata_contig114042.1122.1 vs. uniprot
Match: A0A8D8WVA9_9HEMI (Craniofacial development protein 2 n=4 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8WVA9_9HEMI)

HSP 1 Score: 52.4 bits (124), Expect = 4.470e-5
Identity = 42/142 (29.58%), Postives = 71/142 (50.00%), Query Frame = 1
Query:   10 KATDKAFKRAKHAELQSFLRENTARTAELTRERNQAGLYQHIKSLELEGKRGCKSTY--IKNAFGVLLRDKPSILLRWKERFQELLNAKSPTLHASILDGIEQLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGVDNVCGELL 429
            K + K  +R K   L+  ++E  A    L++E  Q   Y  +  +    K+G + T    ++A G +L +  ++L RW + F+ELLN         I +  EQ+ E   +   PT  E+++A+ K+ N +A G DN+  ELL
Sbjct:  368 KESKKIMRRKKREALKEKIKEIDA----LSKENEQRKFYAAVNRM----KKGFQPTVNACRDANGEMLTNDETVLERWAQHFEELLNEDERITTVRIEE--EQITEEDDMENMPTRSEIQKAIQKMKNNRAPGNDNITAELL 499          
BLAST of mRNA_H-elongata_contig114042.1122.1 vs. uniprot
Match: UPI001F5F87EB (uncharacterized protein LOC124805420 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F87EB)

HSP 1 Score: 51.6 bits (122), Expect = 5.550e-5
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1
Query:  178 YIKNAFGVLLRDKPSILLRWKERFQELLNAKSPTLHASILDGIEQLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGVDNV 414
            +I +  G LL ++  I  RWKE F ELLNA  PT+  S  D  E L    P   EP+L E+KE++ KL   KA G D +
Sbjct:  147 FITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 222          
BLAST of mRNA_H-elongata_contig114042.1122.1 vs. uniprot
Match: A0A6P7FRV3_DIAVI (activity-regulated cytoskeleton associated protein 2-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FRV3_DIAVI)

HSP 1 Score: 51.2 bits (121), Expect = 5.580e-5
Identity = 29/83 (34.94%), Postives = 43/83 (51.81%), Query Frame = 1
Query:  178 YIKNAFGVLLRDKPSILLRWKERFQELLNAKSPTLHASILDGIEQLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGVDNVCGEL 426
            Y ++  G +L DK  +L RW + F E LN     +      G +Q   H   + +PT EEV  A+ KL   KA G+D++C E+
Sbjct:  115 YSRDTNGEILHDKNLVLNRWVQHFSEHLNIND--IEGGYHIGNQQNLHHQLHSEDPTREEVSNAILKLRENKAPGIDDICSEM 195          
BLAST of mRNA_H-elongata_contig114042.1122.1 vs. uniprot
Match: UPI001F5E8EE8 (uncharacterized protein LOC124719790 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5E8EE8)

HSP 1 Score: 51.6 bits (122), Expect = 5.790e-5
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1
Query:  178 YIKNAFGVLLRDKPSILLRWKERFQELLNAKSPTLHASILDGIEQLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGVDNV 414
            +I +  G LL ++  I  RWKE F ELLNA  PT+  S  D  E L    P   EP+L E+KE++ KL   KA G D +
Sbjct:  147 FITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114042.1122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6P8H386_ACTTE4.970e-840.00uncharacterized protein LOC116287377 n=1 Tax=Actin... [more]
A0A8B6E1J6_MYTGA1.150e-734.96Blast:Craniofacial development protein 2 n=1 Tax=M... [more]
UPI001F135E6E1.210e-743.02uncharacterized protein LOC124542503 n=1 Tax=Vanes... [more]
A0A8M1KV33_CLUHA2.910e-740.78zinc finger protein 883-like n=1 Tax=Clupea hareng... [more]
A0A8K0NUE5_LADFU1.570e-540.96Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A8D8R2N7_9HEMI4.150e-529.86Craniofacial development protein 2 n=2 Tax=Cacopsy... [more]
A0A8D8WVA9_9HEMI4.470e-529.58Craniofacial development protein 2 n=4 Tax=Cacopsy... [more]
UPI001F5F87EB5.550e-543.04uncharacterized protein LOC124805420 n=1 Tax=Schis... [more]
A0A6P7FRV3_DIAVI5.580e-534.94activity-regulated cytoskeleton associated protein... [more]
UPI001F5E8EE85.790e-543.04uncharacterized protein LOC124719790 n=1 Tax=Schis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114042contigH-elongata_contig114042:63..491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.1
Seed ortholog evalue3.1e-08
Seed eggNOG ortholog13735.ENSPSIP00000000041
KEGG koko:K04257
KEGG Pathwayko04740,map04740
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3CYKV@33213,487I3@7711,4962T@7742,4CKCN@8459,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04030
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size429
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929658.226953-CDS-H-elongata_contig114042:62..4911622929658.226953-CDS-H-elongata_contig114042:62..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114042 63..491 -
1691679108.7117674-CDS-H-elongata_contig114042:62..4911691679108.7117674-CDS-H-elongata_contig114042:62..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114042 63..491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114042.1122.1prot_H-elongata_contig114042.1122.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114042 63..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114042.1122.1

>prot_H-elongata_contig114042.1122.1 ID=prot_H-elongata_contig114042.1122.1|Name=mRNA_H-elongata_contig114042.1122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MCLKATDKAFKRAKHAELQSFLRENTARTAELTRERNQAGLYQHIKSLEL
EGKRGCKSTYIKNAFGVLLRDKPSILLRWKERFQELLNAKSPTLHASILD
GIEQLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGVDNVCGELL
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mRNA from alignment at H-elongata_contig114042:63..491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114042.1122.1 ID=mRNA_H-elongata_contig114042.1122.1|Name=mRNA_H-elongata_contig114042.1122.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at H-elongata_contig114042:63..491- (Himanthalia elongata Himel1 dioecious)
ATGTGCTTAAAAGCAACAGACAAGGCGTTCAAACGGGCTAAGCACGCGGA GCTACAGAGCTTTCTGCGTGAGAACACCGCCAGGACCGCGGAGCTCACCC GCGAGAGGAACCAGGCAGGACTGTACCAGCACATCAAGTCGCTGGAGCTG GAAGGGAAGAGGGGATGTAAATCAACCTACATCAAGAATGCTTTTGGCGT GTTGTTGCGGGACAAGCCATCTATCCTACTTCGGTGGAAAGAGAGGTTCC AGGAGCTCCTGAACGCGAAATCGCCGACTCTCCACGCCTCTATCCTCGAC GGCATTGAGCAGTTGCCCGAACACGCCCCGCTTGCGGCCGAGCCCACGTT GGAGGAAGTGAAAGAGGCAGTGGGCAAGCTGGGGAACGGCAAGGCTGTCG GCGTCGACAATGTCTGCGGTGAACTGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig114042:63..491-

>mRNA_H-elongata_contig114042.1122.1 ID=mRNA_H-elongata_contig114042.1122.1|Name=mRNA_H-elongata_contig114042.1122.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig114042:63..491- (Himanthalia elongata Himel1 dioecious)
ATGTGCTTAAAAGCAACAGACAAGGCGTTCAAACGGGCTAAGCACGCGGA
GCTACAGAGCTTTCTGCGTGAGAACACCGCCAGGACCGCGGAGCTCACCC
GCGAGAGGAACCAGGCAGGACTGTACCAGCACATCAAGTCGCTGGAGCTG
GAAGGGAAGAGGGGATGTAAATCAACCTACATCAAGAATGCTTTTGGCGT
GTTGTTGCGGGACAAGCCATCTATCCTACTTCGGTGGAAAGAGAGGTTCC
AGGAGCTCCTGAACGCGAAATCGCCGACTCTCCACGCCTCTATCCTCGAC
GGCATTGAGCAGTTGCCCGAACACGCCCCGCTTGCGGCCGAGCCCACGTT
GGAGGAAGTGAAAGAGGCAGTGGGCAAGCTGGGGAACGGCAAGGCTGTCG
GCGTCGACAATGTCTGCGGTGAACTGCTGATGTGCTTAAAAGCAACAGAC
AAGGCGTTCAAACGGGCTAAGCACGCGGAGCTACAGAGCTTTCTGCGTGA
GAACACCGCCAGGACCGCGGAGCTCACCCGCGAGAGGAACCAGGCAGGAC
TGTACCAGCACATCAAGTCGCTGGAGCTGGAAGGGAAGAGGGGATGTAAA
TCAACCTACATCAAGAATGCTTTTGGCGTGTTGTTGCGGGACAAGCCATC
TATCCTACTTCGGTGGAAAGAGAGGTTCCAGGAGCTCCTGAACGCGAAAT
CGCCGACTCTCCACGCCTCTATCCTCGACGGCATTGAGCAGTTGCCCGAA
CACGCCCCGCTTGCGGCCGAGCCCACGTTGGAGGAAGTGAAAGAGGCAGT
GGGCAAGCTGGGGAACGGCAAGGCTGTCGGCGTCGACAATGTCTGCGGTG
AACTGCTG
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