mRNA_H-elongata_contig113837.1104.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113837.1104.1
Unique NamemRNA_H-elongata_contig113837.1104.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig113837.1104.1 vs. uniprot
Match: A0A6H5KA25_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA25_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.510e-23
Identity = 52/81 (64.20%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 PESLALPRSRFKYVSGLKVHYLRETPKRVSGEKEEDTPPLSVLHMNHGFGASSSSWQSITPSLSEALGALVIAHDSPGFGL 243
            PES+A P SRF+ V GLKVHYLRE P  V G      P   VLHMNHGFGASSSSW  +   LS  LGAL IAHD+PGFGL
Sbjct:  170 PESVAFPNSRFEDVGGLKVHYLRENPTSVDGTP---VPARRVLHMNHGFGASSSSWSPVIRRLSRDLGALAIAHDTPGFGL 247
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BLAST of mRNA_H-elongata_contig113837.1104.1 vs. uniprot
Match: A0A5B8MZD7_9CHLO (Alpha/beta-hydrolase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MZD7_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 5.770e-12
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:    1 PESLALPRSRFKYVSGLKVHYLRETPKRV-SGEKEEDTPPLSVLHMNHGFGASSSSWQSITPSLSEALGALVIAHDSPGFGL 243
            PE LA   S F  V G+ VHY     K+V SG KE+      V+H +HGFGAS  SW ++   LSE L  LV+AHD+PGFGL
Sbjct:  121 PEELAEKNSSFSEVKGVLVHY-----KKVGSGAKEKP-----VIHCSHGFGASLYSWSAVQDKLSEGLQTLVVAHDTPGFGL 192
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BLAST of mRNA_H-elongata_contig113837.1104.1 vs. uniprot
Match: A0A2P6U1X7_CHLSO (Bet v1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U1X7_CHLSO)

HSP 1 Score: 63.2 bits (152), Expect = 9.140e-10
Identity = 42/94 (44.68%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:   10 LALPRSRFKYVSGLKVHYLRETP---KRVSGEK-------------EEDTPPLSVLHMNHGFGASSSSWQSITPSLSEALGALVIAHDSPGFGL 243
            LA   SRF  V G+++HY R TP   K  SG                +  PPL+V H  HGFGAS  SW  +   L++ALGA+V AHD PGFGL
Sbjct: 1039 LAGAESRFFPVDGIELHYKRCTPVTAKLGSGAAAGXXXXXXXXXXXRQAQPPLAV-HCLHGFGASCYSWSFVQQELADALGAVVTAHDMPGFGL 1131
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BLAST of mRNA_H-elongata_contig113837.1104.1 vs. uniprot
Match: A0A7J7PNQ3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PNQ3_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 6.170e-7
Identity = 34/88 (38.64%), Postives = 42/88 (47.73%), Query Frame = 1 
Query:   25 SRFKYVSGLKVHYL----RETPKRVSGEKEEDTPPLSV-----------LHMNHGFGASSSSWQSITPSLSEALGALVIAHDSPGFGL 243
            SRF+++  L VH      R  P  V         P S            LH  HGFG+++ SW  +   L+E LGALV AHD PGFGL
Sbjct:  105 SRFRHIDNLSVHVKVKASRSLPPPVPTAGAASLAPPSAAAARLQGAVPALHCYHGFGSNTWSWSLVQQQLAERLGALVTAHDMPGFGL 192
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BLAST of mRNA_H-elongata_contig113837.1104.1 vs. uniprot
Match: A0A7J7PDD3_9CHLO (Alpha/Beta hydrolase protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PDD3_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 6.310e-7
Identity = 34/88 (38.64%), Postives = 42/88 (47.73%), Query Frame = 1 
Query:   25 SRFKYVSGLKVHYL----RETPKRVSGEKEEDTPPLSV-----------LHMNHGFGASSSSWQSITPSLSEALGALVIAHDSPGFGL 243
            SRF+++  L VH      R  P  V         P S            LH  HGFG+++ SW  +   L+E LGALV AHD PGFGL
Sbjct:  105 SRFRHIDNLSVHVKVKASRSLPPPVPTAGAASLAPPSAAAARLQGAVPALHCYHGFGSNTWSWSLVQQQLAERLGALVTAHDMPGFGL 192
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BLAST of mRNA_H-elongata_contig113837.1104.1 vs. uniprot
Match: A0A383VU39_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VU39_TETOB)

HSP 1 Score: 55.1 bits (131), Expect = 6.340e-7
Identity = 32/90 (35.56%), Postives = 44/90 (48.89%), Query Frame = 1 
Query:   19 PRSRFKYVSGLKVHYLRET-----PKRVSGEKEEDTP----------PLSVLHMNHGFGASSSSWQSITPSLSEALGALVIAHDSPGFGL 243
            P SRF+++  L VH   +      P   +       P          P+  +H  HGFG+++ SW  +   L+E LGALV AHD PGFGL
Sbjct:  167 PDSRFRHIDNLSVHVKVKASRSLPPPAPTAAAARLAPXXXXXARLQGPVPAVHCYHGFGSNTWSWSLVQQQLAERLGALVTAHDMPGFGL 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113837.1104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KA25_9PHAE4.510e-2364.20Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A5B8MZD7_9CHLO5.770e-1250.00Alpha/beta-hydrolase n=1 Tax=Chloropicon primus Ta... [more]
A0A2P6U1X7_CHLSO9.140e-1044.68Bet v1 n=1 Tax=Chlorella sorokiniana TaxID=3076 Re... [more]
A0A7J7PNQ3_9CHLO6.170e-738.64Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A7J7PDD3_9CHLO6.310e-738.64Alpha/Beta hydrolase protein n=1 Tax=Scenedesmus s... [more]
A0A383VU39_TETOB6.340e-735.56Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113837contigH-elongata_contig113837:2..579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.2259398-CDS-H-elongata_contig113837:1..551622929656.2259398-CDS-H-elongata_contig113837:1..55Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113837 2..55 +
1691679108.0128386-CDS-H-elongata_contig113837:1..551691679108.0128386-CDS-H-elongata_contig113837:1..55Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113837 2..55 +
1622929656.2482603-CDS-H-elongata_contig113837:390..5791622929656.2482603-CDS-H-elongata_contig113837:390..579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113837 391..579 +
1691679108.020917-CDS-H-elongata_contig113837:390..5791691679108.020917-CDS-H-elongata_contig113837:390..579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113837 391..579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113837.1104.1prot_H-elongata_contig113837.1104.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113837 2..579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113837.1104.1

>prot_H-elongata_contig113837.1104.1 ID=prot_H-elongata_contig113837.1104.1|Name=mRNA_H-elongata_contig113837.1104.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
PESLALPRSRFKYVSGLKVHYLRETPKRVSGEKEEDTPPLSVLHMNHGFG
ASSSSWQSITPSLSEALGALVIAHDSPGFGL
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mRNA from alignment at H-elongata_contig113837:2..579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113837.1104.1 ID=mRNA_H-elongata_contig113837.1104.1|Name=mRNA_H-elongata_contig113837.1104.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=578bp|location=Sequence derived from alignment at H-elongata_contig113837:2..579+ (Himanthalia elongata Himel1 dioecious)
CCGGAGAGTCTGGCGCTCCCCAGAAGCCGCTTCAAATATGTCAGCGGTCT
GAAGGTGCTTAAGGTCGTGGATGCACGTCCGGTCTGTCGATCGGCCGCTC
TTTCTTTTTACTTCACTACCTGCTTTTCGTATCGTGATGTCACGTTTACA
AGCAGTTATATGGGCACGAACTCAGCTATTGTTTCTTCGTGCGCAGACAA
GATCGACAGTTTGGATAAACAACGTAGCACTTTTGTCAAATATTTAGACC
CGACCGACCGTCCACAGTTCATGTATACCCCGATCTCTTATATATCATGT
CTCGATTTCGCTGCTGCAAACAAATATCGGTGCTCGTCACGGGAACCACG
TGACAACTCATCACGGGGGGCAACTCATCGCGCGGAAAGGTGCACTACTT
GCGCGAGACCCCAAAGAGAGTGTCGGGGGAGAAAGAAGAGGACACCCCGC
CACTCTCTGTGCTCCACATGAACCACGGATTTGGCGCATCGTCTTCGTCT
TGGCAGAGCATCACCCCGTCGTTGTCGGAGGCTCTCGGTGCGCTGGTTAT
CGCGCACGACTCGCCCGGGTTCGGGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig113837:2..579+

>mRNA_H-elongata_contig113837.1104.1 ID=mRNA_H-elongata_contig113837.1104.1|Name=mRNA_H-elongata_contig113837.1104.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig113837:2..579+ (Himanthalia elongata Himel1 dioecious)
CCGGAGAGTCTGGCGCTCCCCAGAAGCCGCTTCAAATATGTCAGCGGTCT
GAAGCCGGAGAGTCTGGCGCTCCCCAGAAGCCGCTTCAAATATGTCAGCG
GTCTGAAGGTGCACTACTTGCGCGAGACCCCAAAGAGAGTGTCGGGGGAG
AAAGAAGAGGACACCCCGCCACTCTCTGTGCTCCACATGAACCACGGATT
TGGCGCATCGTCTTCGTCTTGGCAGAGCATCACCCCGTCGTTGTCGGAGG
CTCTCGGTGCGCTGGTTATCGCGCACGACTCGCCCGGGTTCGGGCTGGTG
CACTACTTGCGCGAGACCCCAAAGAGAGTGTCGGGGGAGAAAGAAGAGGA
CACCCCGCCACTCTCTGTGCTCCACATGAACCACGGATTTGGCGCATCGT
CTTCGTCTTGGCAGAGCATCACCCCGTCGTTGTCGGAGGCTCTCGGTGCG
CTGGTTATCGCGCACGACTCGCCCGGGTTCGGGCTG
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