mRNA_H-elongata_contig113630.1089.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113630.1089.1
Unique NamemRNA_H-elongata_contig113630.1089.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113630.1089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113630contigH-elongata_contig113630:533..1698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size342
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113630.1089.1prot_H-elongata_contig113630.1089.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113630 533..1680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.2131386-CDS-H-elongata_contig113630:532..8641622929655.2131386-CDS-H-elongata_contig113630:532..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113630 533..864 +
1691679107.6256876-CDS-H-elongata_contig113630:532..8641691679107.6256876-CDS-H-elongata_contig113630:532..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113630 533..864 +
1622929655.2264414-CDS-H-elongata_contig113630:1670..16801622929655.2264414-CDS-H-elongata_contig113630:1670..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113630 1671..1680 +
1691679107.6352654-CDS-H-elongata_contig113630:1670..16801691679107.6352654-CDS-H-elongata_contig113630:1670..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113630 1671..1680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.2427661-UTR-H-elongata_contig113630:1680..16981622929655.2427661-UTR-H-elongata_contig113630:1680..1698Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113630 1681..1698 +
1691679107.6442204-UTR-H-elongata_contig113630:1680..16981691679107.6442204-UTR-H-elongata_contig113630:1680..1698Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113630 1681..1698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113630.1089.1

>prot_H-elongata_contig113630.1089.1 ID=prot_H-elongata_contig113630.1089.1|Name=mRNA_H-elongata_contig113630.1089.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
ATLVTRGRVADEAVRAAIKLDQETAARSAAHIASLQRTARLNNDTIAAST
ADHERAILSLTAPRTFLSTKSWSGHRSRATMPLPQVSPAPPFITNSDSGS
DFPALRNKPHRNG*
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mRNA from alignment at H-elongata_contig113630:533..1698+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113630.1089.1 ID=mRNA_H-elongata_contig113630.1089.1|Name=mRNA_H-elongata_contig113630.1089.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1166bp|location=Sequence derived from alignment at H-elongata_contig113630:533..1698+ (Himanthalia elongata Himel1 dioecious)
GCCACCCTGGTCACCAGGGGGCGTGTAGCGGATGAGGCCGTCCGAGCGGC
GATCAAGCTCGACCAAGAGACCGCGGCAAGGTCGGCGGCCCACATCGCGT
CCCTCCAACGCACGGCCCGCCTCAACAACGACACCATCGCGGCGTCCACC
GCTGACCACGAGCGGGCCATCCTCTCTCTGACCGCGCCGAGGACCTTCCT
CTCCACCAAGTCGTGGAGCGGCCATCGCTCACGAGCCACCATGCCCCTCC
CCCAGGTGTCGCCGGCACCGCCGTTCATAACGAACAGCGACTCCGGCTCT
GATTTTCCAGCTCTCCGGAATAAACCCCATAGGCAAGCCCCGGCGCGCTT
TTATCACGCCCCTGAATTGAACGACGGCAGCGAACCGCCGTTTTCCTCTG
CGCTCGCTCGTTTTTCGCGACCTCATACGAATCGCCCCCGTGCGATCCCC
CAATTGACGCCGATCTCTTCCGTGCCTCAAGCAGCCGTTAACGGCCCCGA
GACTTTTTCTCCCCCTTGTCGCCGCAATTATTCGCGGCAATCACTAATGC
CGTGATAGCCGCTGTAACACAACACATTACGAATACTAATATTGCGCCCT
TGACCACTCCTGGTCCCCAACCAATACCCCTCGCGGATACTGTTGCGGAT
ACTGTTGCGGCTGGTGTTACTACTGTTGCAGATACTGTCACGGCTACTGT
TGCACCGACCCCCCCCCCGATAATCTCGCCCCTCACGACCAGAATAATAT
CGGTCCACTCACGCGCGACGACTCTGTCCCGCTTAACTCCCCGCGCACAC
ACGCCCCCCGTGGTTTCGATCCCAATTTCGCCTATAAACTCCAGGCCAAA
TATCGTACGCTCAATACGCGTCGCGTCCTCCGCGTACAACAATTACAGTT
CTCGCCTCACTCGGATAGAGCTTCGGCTACCCAGTTACTAGTACATTCGC
TGCGCGACGCCCTCTTAGGGATATTTGACGTCGCGGATTCAACCGGCACC
ATCACTATGCAGTCACCTCAATGGGTCACTGGATGGCACGTCCCCCTACT
TAAACTGACCAAAGCAGCTATCACGCCTAACCGCGATGGTACCCGCGCTT
TACATCGCCTCGTCGATGACCTCTTTGCCCAACTCCAGGAACGGCTGAAC
ACAGGAATGGACGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig113630:533..1698+

>mRNA_H-elongata_contig113630.1089.1 ID=mRNA_H-elongata_contig113630.1089.1|Name=mRNA_H-elongata_contig113630.1089.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig113630:533..1698+ (Himanthalia elongata Himel1 dioecious)
GCCACCCTGGTCACCAGGGGGCGTGTAGCGGATGAGGCCGTCCGAGCGGC
GATCAAGCTCGACCAAGAGACCGCGGCAAGGTCGGCGGCCCACATCGCGT
CCCTCCAACGCACGGCCCGCCTCAACAACGACACCATCGCGGCGTCCACC
GCTGACCACGAGCGGGCCATCCTCTCTCTGACCGCGCCGAGGACCTTCCT
CTCCACCAAGTCGTGGAGCGGCCATCGCTCACGAGCCACCATGCCCCTCC
CCCAGGTGTCGCCGGCACCGCCGTTCATAACGAACAGCGACTCCGGCTCT
GATTTTCCAGCTCTCCGGAATAAACCCCATAGGCCACCCTGGTCACCAGG
GGGCGTGTAGCGGATGAGGCCGTCCGAGCGGCGATCAAGCTCGACCAAGA
GACCGCGGCAAGGTCGGCGGCCCACATCGCGTCCCTCCAACGCACGGCCC
GCCTCAACAACGACACCATCGCGGCGTCCACCGCTGACCACGAGCGGGCC
ATCCTCTCTCTGACCGCGCCGAGGACCTTCCTCTCCACCAAGTCGTGGAG
CGGCCATCGCTCACGAGCCACCATGCCCCTCCCCCAGGTGTCGCCGGCAC
CGCCGTTCATAACGAACAGCGACTCCGGCTCTGATTTTCCAGCTCTCCGG
AATAAACCCCATAGGAACGGCTGAGAACGGCTGA
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