mRNA_H-elongata_contig113281.1073.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113281.1073.1
Unique NamemRNA_H-elongata_contig113281.1073.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113281.1073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113281contigH-elongata_contig113281:484..1010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size527
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.2182617-CDS-H-elongata_contig113281:483..8071622929653.2182617-CDS-H-elongata_contig113281:483..807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113281 484..807 +
1691679106.7358906-CDS-H-elongata_contig113281:483..8071691679106.7358906-CDS-H-elongata_contig113281:483..807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113281 484..807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.231488-UTR-H-elongata_contig113281:807..10101622929653.231488-UTR-H-elongata_contig113281:807..1010Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113281 808..1010 +
1691679106.7452629-UTR-H-elongata_contig113281:807..10101691679106.7452629-UTR-H-elongata_contig113281:807..1010Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113281 808..1010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113281.1073.1prot_H-elongata_contig113281.1073.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113281 484..807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113281.1073.1

>prot_H-elongata_contig113281.1073.1 ID=prot_H-elongata_contig113281.1073.1|Name=mRNA_H-elongata_contig113281.1073.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MACCIIQVGIDARVDYGDVEQQCLVLASAVVAKESSYLCCHIHSQRVRFT
FLSTCPLSKGSHVSWTINWIFLSRRDLARAWCSTRLCVRELHLVSAHEIP
WRLVCSL*
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mRNA from alignment at H-elongata_contig113281:484..1010+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113281.1073.1 ID=mRNA_H-elongata_contig113281.1073.1|Name=mRNA_H-elongata_contig113281.1073.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=527bp|location=Sequence derived from alignment at H-elongata_contig113281:484..1010+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTGCTGTATTATCCAGGTTGGAATTGACGCAAGGGTTGACTATGG
AGATGTGGAGCAGCAGTGCCTTGTCCTTGCGTCGGCGGTGGTTGCCAAAG
AGAGCTCCTACCTCTGCTGTCACATCCATTCGCAACGGGTTAGGTTCACA
TTTTTGTCCACCTGCCCTCTGTCGAAAGGATCACATGTGTCGTGGACGAT
AAACTGGATTTTTCTCTCGCGCAGGGATCTAGCGAGAGCCTGGTGTAGCA
CTCGGTTGTGCGTGAGAGAGCTCCATCTCGTCTCTGCGCACGAGATACCA
TGGAGGCTGGTGTGTTCTTTGTGACACATATTACTATGGCACATCCCACC
GACTGGTTGTGCAGAGCGCAAGATGACGATTTTCGATTCCTGAGCAAGTA
ACGCACATCCACTCCCACCTTACCTCCCCTACTTCAACCTGGACAAAAAC
GTGTACACGAATGCAGCAATGTCTGACTCGGGAAAGGAGCACTCCATCTT
GTGTGCGCTTCGTGTCATCGGAACACC
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Coding sequence (CDS) from alignment at H-elongata_contig113281:484..1010+

>mRNA_H-elongata_contig113281.1073.1 ID=mRNA_H-elongata_contig113281.1073.1|Name=mRNA_H-elongata_contig113281.1073.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig113281:484..1010+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTGCTGTATTATCCAGGTTGGAATTGACGCAAGGGTTGACTATGG
AGATGTGGAGCAGCAGTGCCTTGTCCTTGCGTCGGCGGTGGTTGCCAAAG
AGAGCTCCTACCTCTGCTGTCACATCCATTCGCAACGGGTTAGGTTCACA
TTTTTGTCCACCTGCCCTCTGTCGAAAGGATCACATGTGTCGTGGACGAT
AAACTGGATTTTTCTCTCGCGCAGGGATCTAGCGAGAGCCTGGTGTAGCA
CTCGGTTGTGCGTGAGAGAGCTCCATCTCGTCTCTGCGCACGAGATACCA
TGGAGGCTGGTGTGTTCTTTGTGAATGGCGTGCTGTATTATCCAGGTTGG
AATTGACGCAAGGGTTGACTATGGAGATGTGGAGCAGCAGTGCCTTGTCC
TTGCGTCGGCGGTGGTTGCCAAAGAGAGCTCCTACCTCTGCTGTCACATC
CATTCGCAACGGGTTAGGTTCACATTTTTGTCCACCTGCCCTCTGTCGAA
AGGATCACATGTGTCGTGGACGATAAACTGGATTTTTCTCTCGCGCAGGG
ATCTAGCGAGAGCCTGGTGTAGCACTCGGTTGTGCGTGAGAGAGCTCCAT
CTCGTCTCTGCGCACGAGATACCATGGAGGCTGGTGTGTTCTTTGTGA
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