mRNA_H-elongata_contig100085.11.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100085.11.1
Unique NamemRNA_H-elongata_contig100085.11.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A067CDT4_SAPPC (Protein DPCD n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CDT4_SAPPC)

HSP 1 Score: 105 bits (261), Expect = 2.580e-26
Identity = 45/92 (48.91%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   16 QPTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291
            QPTF  R+  T W+W +RNLPYP+ETY + +D++ + +V+RT+NKKYFK F++P+MVR    L A++V+F+HD  T L ++Y KP++V+  E
Sbjct:   85 QPTFLCREAATHWEWRVRNLPYPKETYAIGIDDDAQTIVIRTSNKKYFKRFQIPAMVRQSQRLSAAAVSFTHDNNT-LVVHYKKPDAVMAVE 175          
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A6P4ZQP5_BRABE (Protein DPCD n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZQP5_BRABE)

HSP 1 Score: 104 bits (259), Expect = 6.270e-26
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291
            P F  RDT+ A+ W IRNLPYP ETYN+ VD + R +++RTTNKKY+K F +P M RAGLPL+  +VN++H    TL I Y KP  V+  E
Sbjct:   92 PIFTRRDTKKAFMWRIRNLPYPIETYNVTVDTDNRCVIVRTTNKKYYKKFTIPDMDRAGLPLEQRAVNYAH-ANNTLVITYEKPAGVLEME 181          
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A024TDT6_9STRA (Protein DPCD n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TDT6_9STRA)

HSP 1 Score: 103 bits (258), Expect = 8.240e-26
Identity = 45/91 (49.45%), Postives = 65/91 (71.43%), Query Frame = 1
Query:   19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291
            P F  R++   W+W +RNLPYP++TY + +D+  + +++RTTNKKYFK FRVP+MVRA LPLQ SS++ +H   T L + Y KP+ V+  E
Sbjct:   90 PIFLCRESTATWEWRVRNLPYPKDTYVITIDQATQEIIIRTTNKKYFKRFRVPAMVRASLPLQQSSLSHTHSNNT-LVVQYEKPDEVVEAE 179          
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A2Y9RNM8_TRIMA (Protein DPCD n=3 Tax=Eutheria TaxID=9347 RepID=A0A2Y9RNM8_TRIMA)

HSP 1 Score: 103 bits (257), Expect = 1.520e-25
Identity = 48/97 (49.48%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    1 WLLLLQPTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291
            W+ LLQP F  +DT+ +++W IRNLPYP++ Y++ VD+++R LV+RTTNKKY+K F +P + R  LPL  SS++F+H    TL I Y KP+ V+  E
Sbjct:   94 WICLLQPIFIRKDTKMSFQWRIRNLPYPKDVYSVCVDQKERCLVIRTTNKKYYKKFSIPDLDRYQLPLDDSSLSFAH-ANCTLIISYQKPKEVLVAE 189          
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A6A4ZHR6_9STRA (Protein DPCD (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZHR6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.930e-25
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291
            P F  R++   W+W +RNLPYP++TY + +DE  + + +RTTNKKYFK FR+P+M RA LPL  S+++ SH   T L I Y KP++V+  E
Sbjct:   18 PIFLCRESTEVWEWRVRNLPYPKDTYLITIDESSQEITIRTTNKKYFKRFRIPAMARANLPLDRSALSHSHSNNT-LVIQYDKPDAVLEAE 107          
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: W4FTS3_9STRA (Protein DPCD n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FTS3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.370e-25
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291
            P F  R++   W+W +RNLPYP++TY + +DE  + L++RTTNKKYFK FR+P+M RA LPL  S+++ SH   T L I Y KP++V+  E
Sbjct:   90 PIFLCRESTEVWEWRVRNLPYPKDTYLITIDESSQELIIRTTNKKYFKRFRIPAMARANLPLDRSALSHSHSNNT-LVIQYDKPDAVLEAE 179          
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A6G0XJM7_9STRA (Protein DPCD n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJM7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.030e-25
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   13 LQPTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291
            + P F  R+    W+W +RNLPYP+ETY + +D+  + +V+RTTNKKYFK FR+P+M RA L L  +S++ SH   T L I Y KP+ VI +E
Sbjct:   71 VNPIFLCREAEEVWEWRVRNLPYPKETYLISIDDTTQEIVIRTTNKKYFKRFRIPAMARANLRLDGTSLSHSHSNNT-LVIQYEKPDQVIEDE 162          
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A836CLT6_9STRA (Protein DPCD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.090e-24
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291
            P + +RD   AW+WH+ N+PY E TY++ V +E + LVLRTTN+K+FK +RVP M R GL L AS V+F H G TTL + Y KP   I++E
Sbjct:   85 PVWCARDATDAWEWHVLNIPYEESTYSVTVSDETQELVLRTTNRKFFKRWRVPGMARLGLRLAASPVSFRHSG-TTLVVRYLKPPQAIDQE 174          
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A7M7PDT1_STRPU (Protein DPCD n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PDT1_STRPU)

HSP 1 Score: 99.4 bits (246), Expect = 2.200e-24
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVI 282
            P F  +DTR A++W IRNLPYP ETY+L VD++ R  ++RT+NKKY+K F +P M RAGLPLQ S  + +H   T L I Y KP  ++
Sbjct:   54 PIFTRKDTRQAFQWRIRNLPYPIETYSLSVDQDTRCCIIRTSNKKYYKKFSIPDMDRAGLPLQQSDFSMAHSNNT-LIINYKKPAEIL 140          
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A7S3XNY6_HETAK (Protein DPCD (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNY6_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 7.040e-24
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   13 LQPTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291
            + P+FH RD    W+W +RNLPYP +TY++ V++E   LVLRT+NKKYFK ++VP +VR GL L+   + F H   T L I YAKP +V+  E
Sbjct:   94 VNPSFHPRDNTECWEWRVRNLPYPLDTYSITVEKEGTELVLRTSNKKYFKRWKVPFLVRLGLLLEDEHIEFDHQNNT-LIIQYAKPTAVLELE 185          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067CDT4_SAPPC2.580e-2648.91Protein DPCD n=1 Tax=Saprolegnia parasitica (strai... [more]
A0A6P4ZQP5_BRABE6.270e-2653.85Protein DPCD n=5 Tax=Branchiostoma TaxID=7737 RepI... [more]
A0A024TDT6_9STRA8.240e-2649.45Protein DPCD n=1 Tax=Aphanomyces invadans TaxID=15... [more]
A0A2Y9RNM8_TRIMA1.520e-2549.48Protein DPCD n=3 Tax=Eutheria TaxID=9347 RepID=A0A... [more]
A0A6A4ZHR6_9STRA2.930e-2548.35Protein DPCD (Fragment) n=1 Tax=Aphanomyces astaci... [more]
W4FTS3_9STRA3.370e-2549.45Protein DPCD n=1 Tax=Aphanomyces astaci TaxID=1120... [more]
A0A6G0XJM7_9STRA8.030e-2548.39Protein DPCD n=1 Tax=Aphanomyces euteiches TaxID=1... [more]
A0A836CLT6_9STRA2.090e-2451.65Protein DPCD n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7M7PDT1_STRPU2.200e-2452.27Protein DPCD n=1 Tax=Strongylocentrotus purpuratus... [more]
A0A7S3XNY6_HETAK7.040e-2449.46Protein DPCD (Fragment) n=1 Tax=Heterosigma akashi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100085contigH-elongata_contig100085:787..1255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score105.1
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog7739.XP_002608902.1
Preferred nameDPCD
KEGG koko:K20800
GOsGO:0000003,GO:0003002,GO:0003341,GO:0003351,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007276,GO:0007283,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0009799,GO:0009855,GO:0009987,GO:0019953,GO:0021537,GO:0021591,GO:0021670,GO:0021678,GO:0022414,GO:0030317,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0040011,GO:0044703,GO:0048232,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0060322,GO:0060972,GO:0097722
EggNOG free text desc.third ventricle development
EggNOG OGs28N36@1,2QUNA@2759,38EY3@33154,3BN38@33208,3CV6Y@33213,484YQ@7711
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein DPCD
Ec32 orthologEc-12_005430.1
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.4906282-CDS-H-elongata_contig100085:786..9901622929543.4906282-CDS-H-elongata_contig100085:786..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100085 787..990 -
1691679062.0401247-CDS-H-elongata_contig100085:786..9901691679062.0401247-CDS-H-elongata_contig100085:786..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100085 787..990 -
1622929543.51102-CDS-H-elongata_contig100085:1168..12551622929543.51102-CDS-H-elongata_contig100085:1168..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100085 1169..1255 -
1691679062.0596724-CDS-H-elongata_contig100085:1168..12551691679062.0596724-CDS-H-elongata_contig100085:1168..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100085 1169..1255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100085.11.1prot_H-elongata_contig100085.11.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100085 787..1255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100085.11.1

>prot_H-elongata_contig100085.11.1 ID=prot_H-elongata_contig100085.11.1|Name=mRNA_H-elongata_contig100085.11.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
WLLLLQPTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNK
KYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE
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mRNA from alignment at H-elongata_contig100085:787..1255-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100085.11.1 ID=mRNA_H-elongata_contig100085.11.1|Name=mRNA_H-elongata_contig100085.11.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=469bp|location=Sequence derived from alignment at H-elongata_contig100085:787..1255- (Himanthalia elongata Himel1 dioecious)
TGGCTACTACTACTACAGCCTACGTTCCATTCACGCGATACGCGGACGGC ATGGAAATGGCACATCCGGAACCTCCCCTATCCCGAGGTGAAGCGCCCCC AAGGTCGTACCCAGTTTGGCGGTACTTCGTCGCTGATTGCCATACCCGCT AGATCCAACCTCATCCAGCACAAGTTAGCTGCAGACCATATACCGCACGC CAGGCTCAGCAATCGTCGTCTCAGTCGGTCGTTGAGTAGTGCTGTTCGCT CGTCGCTTCGCGCAGGAAACTTATAACCTCCATGTCGACGAGGAAAAGCG AGTGCTCGTTCTCCGCACTACGAACAAGAAGTACTTCAAGGTGTTCAGGG TGCCATCGATGGTCCGAGCGGGACTTCCCCTCCAGGCGTCGAGTGTCAAC TTTTCTCACGACGGTCGCACCACGCTGACGATTTATTACGCGAAGCCAGA ATCGGTGATCAACGAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig100085:787..1255-

>mRNA_H-elongata_contig100085.11.1 ID=mRNA_H-elongata_contig100085.11.1|Name=mRNA_H-elongata_contig100085.11.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig100085:787..1255- (Himanthalia elongata Himel1 dioecious)
TGGCTACTACTACTACAGCCTACGTTCCATTCACGCGATACGCGGACGGC
ATGGAAATGGCACATCCGGAACCTCCCCTATCCCGAGTGGCTACTACTAC
TACAGCCTACGTTCCATTCACGCGATACGCGGACGGCATGGAAATGGCAC
ATCCGGAACCTCCCCTATCCCGAGGAAACTTATAACCTCCATGTCGACGA
GGAAAAGCGAGTGCTCGTTCTCCGCACTACGAACAAGAAGTACTTCAAGG
TGTTCAGGGTGCCATCGATGGTCCGAGCGGGACTTCCCCTCCAGGCGTCG
AGTGTCAACTTTTCTCACGACGGTCGCACCACGCTGACGATTTATTACGC
GAAGCCAGAATCGGTGATCAACGAAGAGGAAACTTATAACCTCCATGTCG
ACGAGGAAAAGCGAGTGCTCGTTCTCCGCACTACGAACAAGAAGTACTTC
AAGGTGTTCAGGGTGCCATCGATGGTCCGAGCGGGACTTCCCCTCCAGGC
GTCGAGTGTCAACTTTTCTCACGACGGTCGCACCACGCTGACGATTTATT
ACGCGAAGCCAGAATCGGTGATCAACGAAGAG
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