mRNA_H-elongata_contig112690.1037.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112690.1037.1
Unique NamemRNA_H-elongata_contig112690.1037.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112690.1037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112690contigH-elongata_contig112690:268..1300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112690.1037.1prot_H-elongata_contig112690.1037.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112690 286..1300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.5331516-UTR-H-elongata_contig112690:267..2851622929648.5331516-UTR-H-elongata_contig112690:267..285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112690 268..285 +
1691679104.6857536-UTR-H-elongata_contig112690:267..2851691679104.6857536-UTR-H-elongata_contig112690:267..285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112690 268..285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.5499644-CDS-H-elongata_contig112690:285..3391622929648.5499644-CDS-H-elongata_contig112690:285..339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112690 286..339 +
1691679104.6970792-CDS-H-elongata_contig112690:285..3391691679104.6970792-CDS-H-elongata_contig112690:285..339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112690 286..339 +
1622929648.5677013-CDS-H-elongata_contig112690:1159..13001622929648.5677013-CDS-H-elongata_contig112690:1159..1300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112690 1160..1300 +
1691679104.708889-CDS-H-elongata_contig112690:1159..13001691679104.708889-CDS-H-elongata_contig112690:1159..1300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112690 1160..1300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112690.1037.1

>prot_H-elongata_contig112690.1037.1 ID=prot_H-elongata_contig112690.1037.1|Name=mRNA_H-elongata_contig112690.1037.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MGKEEVLELLLDHRSEVEAVDYDGNTPLIWAAREGHRGCVNRLLGRGALV
TIPDENGNTALHFAC
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mRNA from alignment at H-elongata_contig112690:268..1300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112690.1037.1 ID=mRNA_H-elongata_contig112690.1037.1|Name=mRNA_H-elongata_contig112690.1037.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1033bp|location=Sequence derived from alignment at H-elongata_contig112690:268..1300+ (Himanthalia elongata Himel1 dioecious)
CTGCACTGGGCCGCACGCATGGGAAAAGAAGAGGTCCTGGAGTTGCTGCT
TGACCATCGCTCCGAGGTTGAGGTGCGATGATGACATCCCCCCGTTGCAG
TCCAGTGGTGTAATGGCTAACGCATACAAAATTGAGTACGCCCCCCACCG
CCTCCCTTTTCTCTAAATACTATATATTATTTTTCGAAGGCCATGGTACG
ATGCTGATGTAGTAAACATTTATACAGCTAGGGGTTGGTCAAGCGCTTGG
ATTAGGGGGAAGCGGGTGACATCCCTCACGCGGCGTGCGTGTAACGGATG
AAACGGAATCGATCCTGTCTATTTTTGTCTGTTTTTTACCAGTATATTTC
AGCTACACTTATGAAATAAACCATACTGGTATTGTGCATCATGTATCATC
GTTTCCTTTTGAATGGGGAGTAGGTTGGAACGTTTTTCTTCCGGATCGTG
GTTTTTCTTTTGATCTACCTTGTGACCACGGGCTGTATTTTTGTTTTTTT
TTACATTAGCTTATTTGAAAATTCAATCAATCAATCATCGATTTAAATAA
CCGCTCGTCTTGTGGCATCAATTTTAAAAATTGTATCGCCACTACTCCCT
GACTATACAGCCATCTGGGTCCACGGCATTTTGCGCTTTTCATGCATCCT
CTATCCCCCCCCCCACCCGGGCTCAGCAGAGAGGAAGGAGTTGACATCCC
TTGTAGATTGAGGGGGTGTATTTGCCCTCGCGAAGCCAACTCGAACCGCT
TCCGCGTATCCTCGGCGTAGCACAATGAAGGCAAATATTTCAAACCTAGT
ATGGTGCGGGTCTGTTTTGTGTTTGGATTTTGCGGCCTCCGTGTGTTATG
TATCTGTACGTTTGCGCATATGTTTCTATCACACAACGGCAGGCGGTGGA
CTATGACGGCAACACGCCGCTCATCTGGGCGGCGCGCGAGGGCCACCGCG
GGTGCGTCAACAGGCTCCTCGGCAGGGGCGCCTTGGTCACCATCCCGGAT
GAGAATGGCAACACCGCGCTGCACTTCGCCTGT
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Coding sequence (CDS) from alignment at H-elongata_contig112690:268..1300+

>mRNA_H-elongata_contig112690.1037.1 ID=mRNA_H-elongata_contig112690.1037.1|Name=mRNA_H-elongata_contig112690.1037.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig112690:268..1300+ (Himanthalia elongata Himel1 dioecious)
ATGGGAAAAGAAGAGGTCCTGGAGTTGCTGCTTGACCATCGCTCCGAGGT
TGAGATGGGAAAAGAAGAGGTCCTGGAGTTGCTGCTTGACCATCGCTCCG
AGGTTGAGGCGGTGGACTATGACGGCAACACGCCGCTCATCTGGGCGGCG
CGCGAGGGCCACCGCGGGTGCGTCAACAGGCTCCTCGGCAGGGGCGCCTT
GGTCACCATCCCGGATGAGAATGGCAACACCGCGCTGCACTTCGCCTGTG
CGGTGGACTATGACGGCAACACGCCGCTCATCTGGGCGGCGCGCGAGGGC
CACCGCGGGTGCGTCAACAGGCTCCTCGGCAGGGGCGCCTTGGTCACCAT
CCCGGATGAGAATGGCAACACCGCGCTGCACTTCGCCTGT
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