mRNA_H-elongata_contig101141.103.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101141.103.1
Unique NamemRNA_H-elongata_contig101141.103.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.950e-41
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 1
Query:   19 TIEESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAELPADDVNGAQSKI 366
            T E   RAEL TLRG+ AGTLT +LSCEGVL WWK+W   YPLLARAARVVFGAPAS+AVLERDF++A  MM SSRS+ DAKY++M+LFLHGNLDLIPE I EL  +DV   Q+KI
Sbjct:  518 TFEPMARAELETLRGVEAGTLTDDLSCEGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKI 630          
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 4.070e-38
Identity = 72/102 (70.59%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   25 EESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAEL 330
            E++ RAEL  LR +  G+L   LSCE VL WWK W  +YPLLAR ARVVFGAPAS+AVLERDFSNAG MMTSSRS+ D+KY++MI+FLHGNLDLIPEDI +L
Sbjct:  580 EQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKL 681          
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 4.690e-38
Identity = 76/113 (67.26%), Postives = 86/113 (76.11%), Query Frame = 1
Query:   28 ESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAELPADDVNGAQSKI 366
            E  RAEL TLR  +   L  + SCEGVL WWKR E SYPLLAR ARVVF APAS  V ERD  +AG MMTSSRS+ DAKY++M+LFLHGN+DL+PE I ELPAD VNG Q+KI
Sbjct:  623 ERARAELETLRSASDDALFGDTSCEGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKI 735          
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.490e-37
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1
Query:   88 ELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDI 321
            ELSC+ VL WWKRW SSYPLLARAARVVFGAPAS+AVLE DF +AG +MTSSRS+TDAKY++MILFLHGNLDLIPEDI
Sbjct:   31 ELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI 108          
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.630e-36
Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = 1
Query:   25 EESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAEL 330
            E++ RAEL  LR +  G+L A L CE VL WWK W  +YPLLAR ARVV GA AS+AVLE DFSNAG MMTSSRS+ D+KY++MILFLHGNLDLIPEDI +L
Sbjct:  353 EQTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL 454          
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.580e-35
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 1
Query:   16 KTIEESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAEL 330
            ++ +++ RAEL  LR +  G L A L CE VL WWK W  +YPLLAR ARVVFGAPAS+AVLE  FSNAG M TSSRS+ D+ Y++MI+FLHGNL+LIPEDI +L
Sbjct:  113 QSFKQTARAELTKLRAVQGGRLAARLRCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKL 217          
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.980e-25
Identity = 59/110 (53.64%), Postives = 70/110 (63.64%), Query Frame = 1
Query:   19 TIEESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAELPADDVN 348
            T E    AE  TLRG+ AG+LT +L CEGVL WW++WE SYPLLARAARV FGAPA           AG          DAKY++M+LFLHG LDL PE I EL  +D++
Sbjct:  317 TFEPMACAEFETLRGVEAGSLTDDLGCEGVLKWWEKWEGSYPLLARAARVDFGAPA-----------AG----------DAKYVEMVLFLHGKLDLFPEQIPELRDEDIH 405          
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.140e-25
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 1
Query:  127 WESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAK-YMDMILFLHGNLDLIPEDIAEL 330
            W   YPLLAR ARVVFGAPAS+AVLERDFSNAG MMTSSR + D+  Y++MILFLHGNLDLIPEDI +L
Sbjct:    2 WAHVYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL 70          
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 7.130e-23
Identity = 52/92 (56.52%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   88 ELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAELPADDVNGAQSK 363
            ELSCE VL WWKRW SSYPLLARA RVVFGAPAS+A                       Y++MILFLHGNLDLIP+DI  LP D  + A +K
Sbjct:   31 ELSCESVLKWWKRWMSSYPLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNK 99          
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.930e-22
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1
Query:  136 SYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKY-MDMILFLHGNLDLIPEDIAEL 330
            +Y LL   ARVVFGAPAS+A LERDFSNAG MMTSSRS+ D+KY ++MILFLHGNLDLIPEDI  L
Sbjct:    5 AYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL 70          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LBK4_ECTSI1.950e-4170.69Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE4.070e-3870.59Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LFP4_ECTSI4.690e-3867.26Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE2.490e-3783.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE4.630e-3668.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE2.580e-3562.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEK6_9PHAE3.980e-2553.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCJ3_9PHAE4.140e-2576.81Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE7.130e-2356.52Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KW12_9PHAE8.930e-2275.76Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101141contigH-elongata_contig101141:1926..2291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog8364.ENSXETP00000038284
EggNOG free text desc.BED zinc finger
EggNOG OGs39UGB@33154,3BN4J@33208,3E6DU@33213,4877C@7711,49996@7742,KOG1121@1,KOG1121@2759
COG Functional cat.KL
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.9591916-CDS-H-elongata_contig101141:1925..22911622929551.9591916-CDS-H-elongata_contig101141:1925..2291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101141 1926..2291 +
1691679066.3512263-CDS-H-elongata_contig101141:1925..22911691679066.3512263-CDS-H-elongata_contig101141:1925..2291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101141 1926..2291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101141.103.1prot_H-elongata_contig101141.103.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101141 1926..2291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101141.103.1

>prot_H-elongata_contig101141.103.1 ID=prot_H-elongata_contig101141.103.1|Name=mRNA_H-elongata_contig101141.103.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
TERSTKTIEESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLL
ARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNL
DLIPEDIAELPADDVNGAQSKI
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mRNA from alignment at H-elongata_contig101141:1926..2291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101141.103.1 ID=mRNA_H-elongata_contig101141.103.1|Name=mRNA_H-elongata_contig101141.103.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at H-elongata_contig101141:1926..2291+ (Himanthalia elongata Himel1 dioecious)
ACAGAGCGCTCTACAAAGACGATCGAGGAGAGCATTCGCGCCGAGCTCAA TACGCTGAGGGGTCTGGCGGCTGGCACACTGACGGCCGAACTGAGCTGCG AGGGTGTGCTCATGTGGTGGAAGAGATGGGAGAGCTCGTACCCACTCCTG GCCCGGGCAGCTCGTGTGGTGTTCGGAGCTCCAGCGTCGTCGGCGGTGCT CGAGCGCGATTTCAGCAATGCTGGGTACATGATGACGTCATCGAGAAGCT CCACCGATGCCAAGTACATGGACATGATCCTTTTTCTGCACGGCAACCTG GACCTCATTCCCGAGGACATTGCAGAGCTGCCAGCCGACGACGTCAACGG TGCGCAAAGCAAGATT
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Coding sequence (CDS) from alignment at H-elongata_contig101141:1926..2291+

>mRNA_H-elongata_contig101141.103.1 ID=mRNA_H-elongata_contig101141.103.1|Name=mRNA_H-elongata_contig101141.103.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig101141:1926..2291+ (Himanthalia elongata Himel1 dioecious)
ACAGAGCGCTCTACAAAGACGATCGAGGAGAGCATTCGCGCCGAGCTCAA
TACGCTGAGGGGTCTGGCGGCTGGCACACTGACGGCCGAACTGAGCTGCG
AGGGTGTGCTCATGTGGTGGAAGAGATGGGAGAGCTCGTACCCACTCCTG
GCCCGGGCAGCTCGTGTGGTGTTCGGAGCTCCAGCGTCGTCGGCGGTGCT
CGAGCGCGATTTCAGCAATGCTGGGTACATGATGACGTCATCGAGAAGCT
CCACCGATGCCAAGTACATGGACATGATCCTTTTTCTGCACGGCAACCTG
GACCTCATTCCCGAGGACATTGCAGAGCTGCCAGCCGACGACGTCAACGG
TGCGCAAAGCAAGATTACAGAGCGCTCTACAAAGACGATCGAGGAGAGCA
TTCGCGCCGAGCTCAATACGCTGAGGGGTCTGGCGGCTGGCACACTGACG
GCCGAACTGAGCTGCGAGGGTGTGCTCATGTGGTGGAAGAGATGGGAGAG
CTCGTACCCACTCCTGGCCCGGGCAGCTCGTGTGGTGTTCGGAGCTCCAG
CGTCGTCGGCGGTGCTCGAGCGCGATTTCAGCAATGCTGGGTACATGATG
ACGTCATCGAGAAGCTCCACCGATGCCAAGTACATGGACATGATCCTTTT
TCTGCACGGCAACCTGGACCTCATTCCCGAGGACATTGCAGAGCTGCCAG
CCGACGACGTCAACGGTGCGCAAAGCAAGATT
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