prot_H-elongata_contig112554.1022.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig112554.1022.1
Unique Nameprot_H-elongata_contig112554.1022.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length113
Homology
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: D7FMK4_ECTSI (Mediator of RNA polymerase II transcription subunit 14 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMK4_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 7.190e-52
Identity = 85/105 (80.95%), Postives = 96/105 (91.43%), Query Frame = 0
Query:    5 CQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 109
            CQDQ FFMHG LF ARQR+YDVPVAVDVL+GG+YP LPKGIEYCGGD+DPRPIFELPANR EI+ RVDRAIRLALLRRGGVP+QFT+H V NG+LTL V+GEF++
Sbjct:  106 CQDQFFFMHGGLFGARQRLYDVPVAVDVLIGGRYPHLPKGIEYCGGDIDPRPIFELPANREEIVLRVDRAIRLALLRRGGVPNQFTSHTVKNGVLTLTVNGEFEL 210          
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: A0A836CA29_9STRA (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA29_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.070e-18
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 0
Query:   14 GALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIF--ELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 109
            G LF ARQR +DVP A+DVL  G YPRLP GI +CG D D   +   + P  R  +L RVDRA+RLALL R   P+ FT+  V  G L L V  EF++
Sbjct:  116 GGLFGARQRPFDVPAALDVLGSGTYPRLPLGIPWCGMDQDESSLVPTDTPEQRASVLARVDRALRLALLVREPFPAGFTSRAVRRGCLYLEVAHEFEL 213          
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: UPI0020095A09 (mediator of RNA polymerase II transcription subunit 14-like n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020095A09)

HSP 1 Score: 72.8 bits (177), Expect = 1.260e-12
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 0
Query:    1 CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 109
            C  Q  D +FFMH  L +AR  +YDVP A++VL+ G Y RLPK +E  G         + PA     L ++D  +R  LL    +P +FT   VS+G++TL VDGEF++
Sbjct:   91 CFTQAADSMFFMHEGLQQARAPIYDVPSAIEVLLTGNYQRLPKCVEDVGMLGTLNEDQQGPA-----LKKLDTLVRSKLLEVS-LPKEFTEIRVSDGVVTLRVDGEFKI 193          
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: A0A4D9BXU0_SALSN (Mediator of RNA polymerase II transcription subunit 14 n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BXU0_SALSN)

HSP 1 Score: 70.9 bits (172), Expect = 6.110e-12
Identity = 44/109 (40.37%), Postives = 63/109 (57.80%), Query Frame = 0
Query:    1 CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 109
            C  Q  D +FFMH  L +AR  +YDVP A++VL+ G Y RLPK +E  G         + PA     L ++D  +R  LL    +P +FT   VS+G++TL V+GEF++
Sbjct:   91 CFTQAADSMFFMHEGLQQARAPIYDVPSAIEVLLTGNYQRLPKCVEDVGMLGTLNEDQQGPA-----LKKLDTLVRSKLLEVS-LPKEFTEIRVSDGVVTLRVNGEFKI 193          
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: A0A830D088_9LAMI (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D088_9LAMI)

HSP 1 Score: 70.9 bits (172), Expect = 6.120e-12
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 0
Query:    1 CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 109
            C  Q  D +FFMH  L +AR  +YDVP A+++L+GG Y RLPK IE  G         + PA     L +++  +R  LL    +P + T   V +G+++L VDGEF+V
Sbjct:   91 CFTQAADSMFFMHEGLQQARAPIYDVPSAIEILLGGTYQRLPKCIEDVGTQSTLNEDQQGPA-----LKKLETLVRSKLLEIS-LPKEITEIKVYDGVVSLRVDGEFKV 193          
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: A0A2U1QFK7_ARTAN (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QFK7_ARTAN)

HSP 1 Score: 69.3 bits (168), Expect = 2.120e-11
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 0
Query:    1 CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 109
            C  Q  D +FFMH  L +AR  +YDVP A+++L+ G Y RLPK    C  DV  +        +  +L ++D  +R  LL    +P +F+   +S+G +TL V GEF+V
Sbjct:   90 CFTQAADSMFFMHEGLQQARAPIYDVPSAIEILLTGTYERLPK----CTEDVGIQSTLTEKQQK-PVLKKLDTLVRSKLLETA-LPKEFSEVKISDGTVTLIVQGEFKV 192          
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: S8E9Y8_9LAMI (Mediator of RNA polymerase II transcription subunit 14 (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8E9Y8_9LAMI)

HSP 1 Score: 67.8 bits (164), Expect = 7.350e-11
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 0
Query:    1 CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 109
            C  Q  D +FFMH  L +AR  +YDVP A+++L+ G Y RLPK IE  G         + PA R     ++D  +R  LL    +P + +   VS+G+++L  DGEF+V
Sbjct:   91 CFTQAADSMFFMHEGLQQARAPIYDVPSAIEILLSGTYQRLPKCIEDVGTQNTLTEDQQGPALR-----KLDTLVRSKLLDVS-LPKELSRVSVSDGVVSLRADGEFEV 193          
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: F0W2P3_9STRA (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2P3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.000e-9
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 0
Query:    4 QCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRL-EILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 109
            +  D+LFFMH  L RA++RMYD+  A+DVL  G Y RLP  IE     + PR   E P + L +    ++  IR  L++   +P QFT+  + +G +     G+F++
Sbjct:   95 ETNDRLFFMHANLDRAKERMYDLSTAIDVLYKGSYLRLPSVIERA---MYPR---EFPPHNLTKTADTLNNLIRYRLIQ-SNIPKQFTSISLDHGFVYFTCSGQFEI 194          
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: A0A085LYE7_9BILA (Mediator of RNA polymerase II transcription subunit 14 n=3 Tax=Trichuris TaxID=36086 RepID=A0A085LYE7_9BILA)

HSP 1 Score: 51.6 bits (122), Expect = 3.400e-5
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 0
Query:    7 DQLFFM-HGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGV-PSQFTTHVVSNGILTLFVDGEFQVS 110
            D+LF + +  L  AR   + +P+AVDVL  G YPRL + IE     V P  I   PA    I  R+++ ++  ++ + G+ P +     VS+G+ T  V GEF+V+
Sbjct:  116 DRLFQLCNTVLLSARLPAFQIPIAVDVLTLGTYPRLSRAIEQRF--VPPEKIT--PAELQSITRRLNQVVKRRIVSQLGILPKRMRCFEVSDGMATFCVAGEFEVT 217          
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: A0A5S6R235_TRIMR (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R235_TRIMR)

HSP 1 Score: 50.4 bits (119), Expect = 8.620e-5
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 0
Query:    7 DQLFFM-HGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGV-PSQFTTHVVSNGILTLFVDGEFQVS 110
            D+LF + +  L  AR   + VP+AVDVL  G YPRL K IE     V P  I   P+    +  R+++ ++  ++ +  V P +  +  VS+G++T  V GEF+ +
Sbjct:  116 DRLFQLCNSVLLNARLPAFQVPIAVDVLTLGTYPRLSKAIEQRF--VPPEKIT--PSELQSVTRRLNQIVKRRIISQLAVLPKRMRSFEVSDGMVTFRVAGEFEAT 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FMK4_ECTSI7.190e-5280.95Mediator of RNA polymerase II transcription subuni... [more]
A0A836CA29_9STRA1.070e-1851.02Mediator of RNA polymerase II transcription subuni... [more]
UPI0020095A091.260e-1241.28mediator of RNA polymerase II transcription subuni... [more]
A0A4D9BXU0_SALSN6.110e-1240.37Mediator of RNA polymerase II transcription subuni... [more]
A0A830D088_9LAMI6.120e-1239.45Mediator of RNA polymerase II transcription subuni... [more]
A0A2U1QFK7_ARTAN2.120e-1137.61Mediator of RNA polymerase II transcription subuni... [more]
S8E9Y8_9LAMI7.350e-1138.53Mediator of RNA polymerase II transcription subuni... [more]
F0W2P3_9STRA3.000e-936.45Mediator of RNA polymerase II transcription subuni... [more]
A0A085LYE7_9BILA3.400e-534.91Mediator of RNA polymerase II transcription subuni... [more]
A0A5S6R235_TRIMR8.620e-533.96Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013947Mediator complex, subunit Med14PFAMPF08638Med14coord: 4..110
e-value: 1.3E-20
score: 73.7
IPR013947Mediator complex, subunit Med14PANTHERPTHR12809MEDIATOR COMPLEX SUBUNITcoord: 4..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112554contigH-elongata_contig112554:660..1535 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112554.1022.1mRNA_H-elongata_contig112554.1022.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig112554 660..1535 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig112554.1022.1 ID=prot_H-elongata_contig112554.1022.1|Name=mRNA_H-elongata_contig112554.1022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGG
DVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILT
LFVDGEFQVSAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013947Mediator_Med14