mRNA_H-elongata_contig112333.1004.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112333.1004.1
Unique NamemRNA_H-elongata_contig112333.1004.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: D8LLE7_ECTSI (Coatomer protein complex, gamma sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE7_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 7.790e-26
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:   19 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 186
            SPYQDLEKAT+LQECRVFSDSNVVT++P+RCG LITKLLYIL+ GETLSSSETTEV
Sbjct:   51 SPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEV 106
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BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A6U1MSQ3_9STRA (Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MSQ3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.470e-19
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   19 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 186
            SP+ DLEKA +LQECR FSDSNVVT HP+RC  LITKLL+ILS G+T SSSETTEV
Sbjct:   38 SPFADLEKAAVLQECRAFSDSNVVTHHPQRCSHLITKLLHILSTGDTFSSSETTEV 93
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BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A836CC02_9STRA (Coatomer subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC02_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.300e-18
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:   19 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 186
            SPY  LEKAT+LQECR F+DSNVVT++PKRC QLITKLL++L+QGET +SSE T+V
Sbjct:   48 SPYHALEKATVLQECRAFNDSNVVTNNPKRCCQLITKLLHLLTQGETFTSSEVTDV 103
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BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A6S8VPR0_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8VPR0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.420e-18
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   19 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 186
            SP+ DLEKAT+LQECRVFSDS VVT  P++C QLITKLL+I++QG+ +SSSE TEV
Sbjct:   65 SPFSDLEKATVLQECRVFSDSKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEV 120
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BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A7S3ZYC8_9STRA (Hypothetical protein (Fragment) n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYC8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.420e-18
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   19 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 186
            SP+ DLEKAT+LQECRVFSDS VVT  P++C QLITKLL+I++QG+ +SSSE TEV
Sbjct:   65 SPFSDLEKATVLQECRVFSDSKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEV 120
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BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: F0Y6T5_AURAN (Coatomer subunit gamma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6T5_AURAN)

HSP 1 Score: 86.3 bits (212), Expect = 3.320e-18
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   19 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 186
            SP+ DLEKAT+LQECRVFSDS VVT  P++C QLITKLL+I++QG+ +SSSE TEV
Sbjct:   39 SPFADLEKATVLQECRVFSDSKVVTDSPRKCSQLITKLLHIVTQGDAMSSSEVTEV 94
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BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: F0YM71_AURAN (Coatomer subunit gamma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM71_AURAN)

HSP 1 Score: 85.1 bits (209), Expect = 8.440e-18
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   19 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 186
            SP+ DLEKAT+LQECRVFSD+ VVT  P++C QLITKLL+I++QG+ +SSSE TEV
Sbjct:   36 SPFADLEKATVLQECRVFSDAKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEV 91
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BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A4D9D1Q3_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Q3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.140e-17
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   19 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 186
            SPYQDLEKA++LQECRVF D+N+VT  P+ C QLITKLL+ILSQGE L+S ETT V
Sbjct:   54 SPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTV 109
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BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: I2CP15_NANGC (Adaptin_N domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CP15_NANGC)

HSP 1 Score: 84.7 bits (208), Expect = 1.150e-17
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   19 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 186
            SPYQDLEKA++LQECRVF D+N+VT  P+ C QLITKLL+ILSQGE L+S ETT V
Sbjct:   54 SPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTV 109
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BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A8K1CUF4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUF4_PYTOL)

HSP 1 Score: 84.0 bits (206), Expect = 2.150e-17
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 DEIRTDSPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 186
            DE    SP+Q L+KAT+LQE ++FSD+N+VT HPK+C QLITKLL+IL+QGE  +S+ETT+V
Sbjct:   39 DEDDHSSPFQGLDKATVLQETKIFSDANIVTKHPKKCCQLITKLLHILTQGEPFTSTETTDV 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLE7_ECTSI7.790e-2687.50Coatomer protein complex, gamma sub-unit n=1 Tax=E... [more]
A0A6U1MSQ3_9STRA1.470e-1976.79Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica... [more]
A0A836CC02_9STRA1.300e-1873.21Coatomer subunit gamma n=1 Tax=Tribonema minus Tax... [more]
A0A6S8VPR0_9STRA2.420e-1871.43Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S3ZYC8_9STRA2.420e-1871.43Hypothetical protein (Fragment) n=4 Tax=Pelagomona... [more]
F0Y6T5_AURAN3.320e-1871.43Coatomer subunit gamma n=1 Tax=Aureococcus anophag... [more]
F0YM71_AURAN8.440e-1869.64Coatomer subunit gamma n=1 Tax=Aureococcus anophag... [more]
A0A4D9D1Q3_9STRA1.140e-1773.21Adaptin_N domain-containing protein n=1 Tax=Nannoc... [more]
I2CP15_NANGC1.150e-1773.21Adaptin_N domain-containing protein n=2 Tax=Nannoc... [more]
A0A8K1CUF4_PYTOL2.150e-1762.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112333contigH-elongata_contig112333:1523..1714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog2880.D8LLE7
Preferred nameCOPG
KEGG koko:K17267
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0005911,GO:0009506,GO:0009507,GO:0009536,GO:0012505,GO:0012506,GO:0016020,GO:0030054,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0055044,GO:0071944,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5240@1,KOG1078@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCoatomer protein complex, gamma sub-unit
Ec32 orthologEc-27_002360.1
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929645.1154203-CDS-H-elongata_contig112333:1522..17141622929645.1154203-CDS-H-elongata_contig112333:1522..1714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112333 1523..1714 +
1691679103.5399673-CDS-H-elongata_contig112333:1522..17141691679103.5399673-CDS-H-elongata_contig112333:1522..1714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112333 1523..1714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112333.1004.1prot_H-elongata_contig112333.1004.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112333 1523..1714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112333.1004.1

>prot_H-elongata_contig112333.1004.1 ID=prot_H-elongata_contig112333.1004.1|Name=mRNA_H-elongata_contig112333.1004.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
DEIRTDSPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQ
GETLSSSETTEVS*
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mRNA from alignment at H-elongata_contig112333:1523..1714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112333.1004.1 ID=mRNA_H-elongata_contig112333.1004.1|Name=mRNA_H-elongata_contig112333.1004.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig112333:1523..1714+ (Himanthalia elongata Himel1 dioecious)
GACGAAATACGGACAGACTCCCCCTACCAGGATCTGGAGAAGGCGACTCT
GCTTCAGGAATGCCGAGTCTTCAGCGACAGCAACGTTGTCACCTCCCACC
CGAAGCGATGCGGACAGCTCATCACCAAGCTGCTGTACATCCTCTCCCAG
GGAGAGACGCTCTCTTCCTCCGAGACCACCGAGGTAAGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig112333:1523..1714+

>mRNA_H-elongata_contig112333.1004.1 ID=mRNA_H-elongata_contig112333.1004.1|Name=mRNA_H-elongata_contig112333.1004.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig112333:1523..1714+ (Himanthalia elongata Himel1 dioecious)
GACGAAATACGGACAGACTCCCCCTACCAGGATCTGGAGAAGGCGACTCT
GCTTCAGGAATGCCGAGTCTTCAGCGACAGCAACGTTGTCACCTCCCACC
CGAAGCGATGCGGACAGCTCATCACCAAGCTGCTGTACATCCTCTCCCAG
GGAGAGACGCTCTCTTCCTCCGAGACCACCGAGGTAAGTTAGGACGAAAT
ACGGACAGACTCCCCCTACCAGGATCTGGAGAAGGCGACTCTGCTTCAGG
AATGCCGAGTCTTCAGCGACAGCAACGTTGTCACCTCCCACCCGAAGCGA
TGCGGACAGCTCATCACCAAGCTGCTGTACATCCTCTCCCAGGGAGAGAC
GCTCTCTTCCTCCGAGACCACCGAGGTAAGTTAG
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